Wall clock time and date at job start Sun Mar 29 2020 21:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47201 * 2 1 4 4 H 1.09004 * 109.50554 * 55.08576 * 3 2 1 5 5 C 1.53091 * 109.54279 * 175.19336 * 3 2 1 6 6 N 1.47018 * 109.26046 * 176.80881 * 5 3 2 7 7 C 1.46899 * 110.99949 * 177.61119 * 6 5 3 8 8 C 1.53002 * 109.46980 * 293.62811 * 7 6 5 9 9 C 1.50701 * 109.47312 * 180.02562 * 8 7 6 10 10 H 1.08002 * 119.99575 * 0.02562 * 9 8 7 11 11 C 1.37872 * 120.00348 * 180.02562 * 9 8 7 12 12 N 1.31516 * 119.99799 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 120.00076 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47131 * 90.00140 * 13 11 9 15 15 H 1.48503 * 109.47153 * 210.00397 * 13 11 9 16 16 H 1.48499 * 109.47200 * 330.00147 * 13 11 9 17 17 C 1.47015 * 110.74665 * 301.38310 * 6 5 3 18 18 H 1.09002 * 109.50921 * 298.68147 * 17 6 5 19 19 C 1.53004 * 109.54042 * 178.57168 * 17 6 5 20 20 C 1.53100 * 109.26085 * 58.61747 * 17 6 5 21 21 O 1.43015 * 109.50608 * 295.00143 * 3 2 1 22 22 H 1.08994 * 109.47123 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47287 * 299.99873 * 1 2 3 24 24 H 1.09000 * 109.46984 * 59.99689 * 1 2 3 25 25 H 1.08998 * 109.47287 * 240.00127 * 2 1 3 26 26 H 1.09002 * 109.46709 * 119.99857 * 2 1 3 27 27 H 1.09008 * 109.51079 * 296.74445 * 5 3 2 28 28 H 1.09004 * 109.51002 * 56.82486 * 5 3 2 29 29 H 1.08992 * 109.47426 * 53.62978 * 7 6 5 30 30 H 1.09001 * 109.46855 * 173.63515 * 7 6 5 31 31 H 1.09002 * 109.47258 * 300.00349 * 8 7 6 32 32 H 1.09001 * 109.46752 * 60.00641 * 8 7 6 33 33 H 0.97000 * 120.00250 * 179.97438 * 12 11 9 34 34 H 1.09001 * 109.47189 * 300.11302 * 19 17 6 35 35 H 1.08999 * 109.46601 * 60.10993 * 19 17 6 36 36 H 1.08995 * 109.47112 * 180.10854 * 19 17 6 37 37 H 1.09005 * 109.50462 * 63.08044 * 20 17 6 38 38 H 1.08997 * 109.50755 * 183.16905 * 20 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6069 1.9817 0.8425 5 6 3.5662 1.4461 0.1209 6 7 4.0555 2.8303 0.0434 7 6 5.5138 2.8833 0.2122 8 6 5.8783 2.4549 1.6351 9 6 7.3743 2.5099 1.8087 10 1 8.0022 2.8198 0.9864 11 6 7.9413 2.1646 3.0170 12 7 7.1767 1.7867 4.0181 13 14 9.7956 2.2334 3.2322 14 1 10.1881 3.5815 3.7158 15 1 10.2173 1.2102 4.2224 16 1 10.4555 1.9633 1.9297 17 6 3.6487 3.4563 -1.2231 18 1 4.0809 2.9039 -2.0575 19 6 4.1410 4.9045 -1.2594 20 6 2.1217 3.4326 -1.3306 21 8 1.6621 2.0827 -1.2218 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.8567 1.0104 1.0769 28 1 3.9971 0.8609 -0.6916 29 1 5.9871 2.2100 -0.5024 30 1 5.8629 3.9012 0.0386 31 1 5.4050 3.1283 2.3498 32 1 5.5293 1.4370 1.8087 33 1 7.5756 1.5434 4.8681 34 1 3.7085 5.4563 -0.4248 35 1 5.2281 4.9207 -1.1814 36 1 3.8371 5.3681 -2.1979 37 1 1.6910 4.0296 -0.5267 38 1 1.8181 3.8447 -2.2929 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000403905931.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:39 Heat of formation + Delta-G solvation = -80.060600 kcal Electronic energy + Delta-G solvation = -16503.451124 eV Core-core repulsion = 13958.410229 eV Total energy + Delta-G solvation = -2545.040895 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.90382 -37.52251 -35.44345 -34.89759 -32.82319 -31.42615 -28.55609 -27.55658 -25.77716 -24.18412 -22.63508 -21.85358 -20.97388 -18.60639 -17.63688 -17.09844 -16.60768 -16.38505 -15.83582 -15.45339 -15.13150 -14.71932 -14.53309 -14.25490 -13.96570 -13.53639 -13.31162 -13.03664 -12.80980 -12.63556 -12.59178 -12.46151 -12.07172 -12.02057 -11.86638 -11.81561 -11.39306 -11.28404 -11.20993 -10.55184 -10.45938 -9.29891 -8.21654 -6.33288 1.39308 1.40875 1.51787 2.38621 2.76133 2.90255 3.11743 3.73440 3.88672 3.97803 4.09050 4.14465 4.28559 4.34631 4.46201 4.49698 4.62130 4.64520 4.73877 4.78296 4.85483 4.86164 4.96947 5.03450 5.08226 5.11286 5.22128 5.33482 5.43530 5.44558 5.61065 5.75873 6.02630 6.14568 6.24802 6.28494 6.83151 7.35944 8.90518 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.031376 B = 0.006413 C = 0.005516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.192648 B = 4364.788065 C = 5074.764602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.115 4.115 3 C 0.101 3.899 4 H 0.060 0.940 5 C 0.027 3.973 6 N -0.544 5.544 7 C 0.075 3.925 8 C 0.038 3.962 9 C -0.546 4.546 10 H 0.059 0.941 11 C 0.003 3.997 12 N -0.931 5.931 13 Si 0.967 3.033 14 H -0.271 1.271 15 H -0.281 1.281 16 H -0.264 1.264 17 C 0.038 3.962 18 H 0.037 0.963 19 C -0.140 4.140 20 C 0.072 3.928 21 O -0.390 6.390 22 H 0.069 0.931 23 H 0.054 0.946 24 H 0.056 0.944 25 H 0.068 0.932 26 H 0.080 0.920 27 H 0.069 0.931 28 H 0.029 0.971 29 H 0.013 0.987 30 H 0.075 0.925 31 H -0.007 1.007 32 H -0.008 1.008 33 H 0.264 0.736 34 H 0.061 0.939 35 H 0.051 0.949 36 H 0.089 0.911 37 H 0.058 0.942 38 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.998 1.149 -10.577 15.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.153 4.153 3 C 0.043 3.957 4 H 0.078 0.922 5 C -0.102 4.102 6 N -0.269 5.269 7 C -0.052 4.052 8 C 0.001 3.999 9 C -0.584 4.584 10 H 0.077 0.923 11 C -0.195 4.195 12 N -0.571 5.571 13 Si 0.791 3.209 14 H -0.196 1.196 15 H -0.207 1.207 16 H -0.188 1.188 17 C -0.070 4.070 18 H 0.055 0.945 19 C -0.197 4.197 20 C -0.005 4.005 21 O -0.309 6.309 22 H 0.088 0.912 23 H 0.073 0.927 24 H 0.075 0.925 25 H 0.087 0.913 26 H 0.099 0.901 27 H 0.088 0.912 28 H 0.047 0.953 29 H 0.031 0.969 30 H 0.094 0.906 31 H 0.011 0.989 32 H 0.011 0.989 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.108 0.892 37 H 0.076 0.924 38 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -11.322 1.274 -10.175 15.275 hybrid contribution 1.698 -0.442 0.144 1.761 sum -9.624 0.832 -10.031 13.926 Atomic orbital electron populations 1.21646 0.93723 1.02352 1.02060 1.21546 0.97866 0.92865 1.03007 1.22191 0.91422 0.95128 0.86987 0.92234 1.22776 0.96697 0.89666 1.01026 1.62314 1.13194 1.17218 1.34180 1.22083 0.85521 1.00253 0.97323 1.18897 0.94748 0.94582 0.91665 1.21598 0.93353 1.45424 0.98022 0.92296 1.25951 1.03480 0.94558 0.95530 1.70106 1.37318 1.46166 1.03484 0.85427 0.79101 0.78153 0.78234 1.19616 1.20654 1.18832 1.22445 0.97554 0.97057 0.89954 0.94541 1.21802 1.01168 0.93592 1.03183 1.22822 0.91006 0.83155 1.03492 1.87904 1.76536 1.27156 1.39276 0.91245 0.92676 0.92484 0.91301 0.90110 0.91241 0.95291 0.96884 0.90632 0.98891 0.98935 0.92708 0.92026 0.93009 0.89241 0.92354 0.85856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 9.81 71.98 0.71 -2.18 16 2 C -0.11 -2.85 5.65 30.60 0.17 -2.68 16 3 C 0.10 3.02 2.80 30.63 0.09 3.11 16 4 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 5 C 0.03 0.97 4.72 86.31 0.41 1.38 16 6 N -0.54 -20.63 4.54 -869.98 -3.95 -24.57 16 7 C 0.08 3.31 4.68 86.30 0.40 3.72 16 8 C 0.04 2.10 4.91 29.85 0.15 2.25 16 9 C -0.55 -31.60 9.11 25.60 0.23 -31.36 16 10 H 0.06 3.27 7.74 -2.91 -0.02 3.24 16 11 C 0.00 0.17 5.46 84.65 0.46 0.63 16 12 N -0.93 -57.22 13.29 21.45 0.28 -56.94 16 13 Si 0.97 44.52 29.54 68.60 2.03 46.55 16 14 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 15 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 16 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 17 C 0.04 1.15 2.59 44.93 0.12 1.26 16 18 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 19 C -0.14 -3.60 8.92 71.98 0.64 -2.95 16 20 C 0.07 1.83 6.29 72.02 0.45 2.28 16 21 O -0.39 -11.29 10.01 -148.98 -1.49 -12.78 16 22 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 23 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 24 H 0.06 1.21 7.82 -2.39 -0.02 1.19 16 25 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.07 2.85 6.38 -2.38 -0.02 2.84 16 28 H 0.03 1.07 8.14 -2.38 -0.02 1.05 16 29 H 0.01 0.58 8.12 -2.39 -0.02 0.56 16 30 H 0.08 3.19 5.76 -2.39 -0.01 3.18 16 31 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 32 H -0.01 -0.45 6.52 -2.39 -0.02 -0.46 16 33 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 34 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.05 1.47 6.17 -2.39 -0.01 1.45 16 36 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 38 H 0.12 2.35 8.14 -2.39 -0.02 2.33 16 Total: -1.00 -65.27 298.16 1.70 -63.57 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: 1.00 Total: 8.71 kcal Atomic # 6 Polarization: -28.37 SS G_CDS: 3.83 Total: -24.54 kcal Atomic # 7 Polarization: -77.85 SS G_CDS: -3.66 Total: -81.51 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: -1.49 Total: -12.78 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -65.27 1.70 -63.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403905931.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.486 kcal (2) G-P(sol) polarization free energy of solvation -65.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds