Wall clock time and date at job start Sun Mar 29 2020 21:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47092 * 2 1 4 4 H 1.09002 * 109.50681 * 54.91660 * 3 2 1 5 5 C 1.53101 * 109.50692 * 175.00061 * 3 2 1 6 6 N 1.47013 * 109.25632 * 176.78496 * 5 3 2 7 7 C 1.46905 * 110.99606 * 177.60620 * 6 5 3 8 8 C 1.52998 * 109.46679 * 175.91383 * 7 6 5 9 9 C 1.50703 * 109.46825 * 174.54040 * 8 7 6 10 10 H 1.08001 * 119.99817 * 0.02562 * 9 8 7 11 11 C 1.37878 * 120.00239 * 179.97438 * 9 8 7 12 12 N 1.31515 * 119.99695 * 0.02562 * 11 9 8 13 13 Si 1.86794 * 120.00149 * 180.02562 * 11 9 8 14 14 H 1.48508 * 109.47004 * 180.02562 * 13 11 9 15 15 H 1.48498 * 109.47225 * 300.00185 * 13 11 9 16 16 H 1.48494 * 109.47279 * 60.00351 * 13 11 9 17 17 C 1.47011 * 110.75227 * 301.38206 * 6 5 3 18 18 H 1.08993 * 109.50645 * 178.55379 * 17 6 5 19 19 C 1.53003 * 109.50515 * 298.68316 * 17 6 5 20 20 C 1.53093 * 109.25681 * 58.61771 * 17 6 5 21 21 O 1.43012 * 109.26047 * 303.14719 * 20 17 6 22 22 H 1.09002 * 109.47051 * 300.00149 * 1 2 3 23 23 H 1.08999 * 109.46970 * 60.00061 * 1 2 3 24 24 H 1.09000 * 109.47262 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47051 * 239.99851 * 2 1 3 26 26 H 1.08999 * 109.46970 * 119.99939 * 2 1 3 27 27 H 1.09004 * 109.50549 * 56.84348 * 5 3 2 28 28 H 1.08999 * 109.54070 * 296.74184 * 5 3 2 29 29 H 1.09007 * 109.47049 * 55.91804 * 7 6 5 30 30 H 1.09000 * 109.47149 * 295.91508 * 7 6 5 31 31 H 1.09003 * 109.46946 * 54.54720 * 8 7 6 32 32 H 1.09000 * 109.47511 * 294.53847 * 8 7 6 33 33 H 0.97002 * 119.99803 * 359.97438 * 12 11 9 34 34 H 1.08995 * 109.47039 * 64.97443 * 19 17 6 35 35 H 1.09005 * 109.47146 * 184.97127 * 19 17 6 36 36 H 1.08997 * 109.47498 * 304.96763 * 19 17 6 37 37 H 1.09001 * 109.50353 * 183.21812 * 20 17 6 38 38 H 1.08999 * 109.54265 * 63.11323 * 20 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6045 1.9825 0.8408 5 6 3.5658 1.4453 0.1258 6 7 4.0562 2.8290 0.0477 7 6 5.5140 2.8814 0.2213 8 6 5.9986 4.3204 0.0330 9 6 7.4715 4.3989 0.3422 10 1 8.0083 3.5112 0.6425 11 6 8.1339 5.6038 0.2406 12 7 7.4803 6.6847 -0.1256 13 14 9.9597 5.7010 0.6231 14 1 10.4301 7.0978 0.4405 15 1 10.1943 5.2799 2.0277 16 1 10.7062 4.8030 -0.2941 17 6 3.6539 3.4535 -1.2209 18 1 4.0053 4.4849 -1.2464 19 6 4.2638 2.6760 -2.3890 20 6 2.1273 3.4305 -1.3331 21 8 1.6665 2.0811 -1.2239 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.9989 0.8593 -0.6849 28 1 3.8535 1.0106 1.0830 29 1 5.9913 2.2377 -0.5176 30 1 5.7732 2.5389 1.2231 31 1 5.4504 4.9794 0.7063 32 1 5.8268 4.6297 -0.9980 33 1 6.5323 6.6341 -0.3246 34 1 3.8428 1.6711 -2.4159 35 1 4.0389 3.1893 -3.3240 36 1 5.3443 2.6140 -2.2595 37 1 1.8270 3.8407 -2.2974 38 1 1.6937 4.0292 -0.5321 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000403905932.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:41 Heat of formation + Delta-G solvation = -62.575012 kcal Electronic energy + Delta-G solvation = -16669.307310 eV Core-core repulsion = 14125.024647 eV Total energy + Delta-G solvation = -2544.282663 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.88250 -36.27300 -34.04046 -33.31233 -30.87175 -29.86111 -27.13631 -26.01010 -23.88839 -23.29320 -21.88786 -20.53662 -18.70893 -16.91165 -16.23872 -16.16950 -15.24606 -14.82626 -14.29785 -13.77240 -13.74812 -13.58074 -13.45514 -12.72501 -12.30481 -12.18186 -11.92847 -11.77154 -11.49547 -11.14090 -11.09195 -10.97669 -10.91132 -10.74989 -10.28507 -10.13400 -9.99267 -9.68062 -9.24195 -8.58078 -8.32251 -7.81763 -6.36663 -4.05396 3.43639 3.45659 3.64358 3.87735 4.23438 4.56472 4.84324 4.99869 5.13554 5.18918 5.33374 5.35972 5.41374 5.49256 5.54518 5.73409 5.75011 5.81799 5.86185 5.91131 5.94530 6.07064 6.11634 6.18587 6.21356 6.26910 6.43212 6.58149 6.77825 7.24360 7.33373 7.37872 7.59537 7.68080 8.22567 8.45445 8.88075 9.66622 11.04294 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.054961 B = 0.005661 C = 0.005409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.331933 B = 4944.559608 C = 5175.056826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.115 4.115 3 C 0.094 3.906 4 H 0.063 0.937 5 C 0.020 3.980 6 N -0.533 5.533 7 C 0.068 3.932 8 C 0.012 3.988 9 C -0.603 4.603 10 H 0.047 0.953 11 C 0.016 3.984 12 N -0.912 5.912 13 Si 1.069 2.931 14 H -0.282 1.282 15 H -0.288 1.288 16 H -0.289 1.289 17 C 0.041 3.959 18 H 0.100 0.900 19 C -0.178 4.178 20 C 0.071 3.929 21 O -0.382 6.382 22 H 0.052 0.948 23 H 0.061 0.939 24 H 0.051 0.949 25 H 0.068 0.932 26 H 0.074 0.926 27 H 0.040 0.960 28 H 0.077 0.923 29 H 0.024 0.976 30 H 0.064 0.936 31 H 0.015 0.985 32 H 0.009 0.991 33 H 0.268 0.732 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.063 0.937 37 H 0.093 0.907 38 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.506 -10.798 -1.316 15.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.153 4.153 3 C 0.036 3.964 4 H 0.081 0.919 5 C -0.108 4.108 6 N -0.257 5.257 7 C -0.058 4.058 8 C -0.025 4.025 9 C -0.641 4.641 10 H 0.065 0.935 11 C -0.188 4.188 12 N -0.548 5.548 13 Si 0.897 3.103 14 H -0.207 1.207 15 H -0.214 1.214 16 H -0.215 1.215 17 C -0.067 4.067 18 H 0.118 0.882 19 C -0.237 4.237 20 C -0.006 4.006 21 O -0.301 6.301 22 H 0.071 0.929 23 H 0.080 0.920 24 H 0.070 0.930 25 H 0.086 0.914 26 H 0.093 0.907 27 H 0.058 0.942 28 H 0.096 0.904 29 H 0.042 0.958 30 H 0.082 0.918 31 H 0.034 0.966 32 H 0.027 0.973 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.111 0.889 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.534 -9.581 -0.992 14.274 hybrid contribution -0.632 -1.400 -0.513 1.620 sum -11.165 -10.981 -1.505 15.733 Atomic orbital electron populations 1.21693 0.95272 1.01200 1.02282 1.21517 0.96633 0.94622 1.02535 1.22166 0.93267 0.93542 0.87392 0.91902 1.22761 0.95432 0.91215 1.01436 1.62580 1.15155 1.15611 1.32365 1.22207 0.83423 1.00536 0.99656 1.19285 0.96435 0.90612 0.96184 1.21993 0.94193 0.97198 1.50761 0.93461 1.25823 1.06420 0.92201 0.94309 1.70782 1.11358 1.29956 1.42694 0.83547 0.74404 0.76010 0.76336 1.20738 1.21434 1.21517 1.22381 0.95199 1.00702 0.88466 0.88197 1.22311 1.01843 1.00840 0.98709 1.22665 0.92962 0.83298 1.01706 1.87900 1.76734 1.26686 1.38751 0.92926 0.91999 0.92999 0.91373 0.90710 0.94152 0.90439 0.95758 0.91770 0.96624 0.97257 0.92116 0.92504 0.92577 0.91833 0.88898 0.92663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.81 37.16 0.36 -1.08 16 2 C -0.12 -1.26 5.64 -26.73 -0.15 -1.41 16 3 C 0.09 1.29 2.80 -26.68 -0.07 1.22 16 4 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 5 C 0.02 0.31 4.55 -3.71 -0.02 0.30 16 6 N -0.53 -9.86 4.79 -226.34 -1.08 -10.95 16 7 C 0.07 1.47 4.52 -3.82 -0.02 1.46 16 8 C 0.01 0.31 3.59 -27.88 -0.10 0.21 16 9 C -0.60 -17.31 9.11 -34.44 -0.31 -17.63 16 10 H 0.05 1.34 7.74 -52.49 -0.41 0.93 16 11 C 0.02 0.48 5.46 -17.82 -0.10 0.38 16 12 N -0.91 -28.07 13.65 55.43 0.76 -27.31 16 13 Si 1.07 25.45 29.90 -169.99 -5.08 20.37 16 14 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 15 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 16 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 17 C 0.04 0.72 2.47 -67.60 -0.17 0.55 16 18 H 0.10 1.93 6.18 -51.93 -0.32 1.61 16 19 C -0.18 -2.97 8.39 37.16 0.31 -2.65 16 20 C 0.07 1.04 6.41 37.21 0.24 1.28 16 21 O -0.38 -5.68 9.39 -35.23 -0.33 -6.01 16 22 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 23 H 0.06 0.67 7.83 -51.93 -0.41 0.26 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.04 0.64 6.50 -51.93 -0.34 0.30 16 28 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.02 0.52 6.67 -51.93 -0.35 0.18 16 30 H 0.06 1.40 8.14 -51.93 -0.42 0.97 16 31 H 0.02 0.43 8.01 -51.93 -0.42 0.01 16 32 H 0.01 0.25 6.44 -51.93 -0.33 -0.09 16 33 H 0.27 8.23 7.22 -40.82 -0.29 7.94 16 34 H 0.06 0.91 6.20 -51.93 -0.32 0.59 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.06 1.19 6.39 -51.93 -0.33 0.85 16 37 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 292.42 15.07 4.41 4.41 Total: -1.00 -30.58 292.42 -7.90 -38.48 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -6.54 Total: -1.59 kcal Atomic # 6 Polarization: -17.37 SS G_CDS: -0.02 Total: -17.39 kcal Atomic # 7 Polarization: -37.93 SS G_CDS: -0.33 Total: -38.26 kcal Atomic # 8 Polarization: -5.68 SS G_CDS: -0.33 Total: -6.01 kcal Atomic # 14 Polarization: 25.45 SS G_CDS: -5.08 Total: 20.37 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -30.58 -7.90 -38.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403905932.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.098 kcal (2) G-P(sol) polarization free energy of solvation -30.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds