Wall clock time and date at job start Sun Mar 29 2020 21:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47092 * 2 1 4 4 H 1.09002 * 109.50681 * 54.91660 * 3 2 1 5 5 C 1.53101 * 109.50692 * 175.00061 * 3 2 1 6 6 N 1.47013 * 109.25632 * 176.78496 * 5 3 2 7 7 C 1.46905 * 110.99606 * 177.60620 * 6 5 3 8 8 C 1.52998 * 109.46679 * 175.91383 * 7 6 5 9 9 C 1.50703 * 109.46825 * 174.54040 * 8 7 6 10 10 H 1.08001 * 119.99817 * 0.02562 * 9 8 7 11 11 C 1.37878 * 120.00239 * 179.97438 * 9 8 7 12 12 N 1.31515 * 119.99695 * 0.02562 * 11 9 8 13 13 Si 1.86794 * 120.00149 * 180.02562 * 11 9 8 14 14 H 1.48508 * 109.47004 * 180.02562 * 13 11 9 15 15 H 1.48498 * 109.47225 * 300.00185 * 13 11 9 16 16 H 1.48494 * 109.47279 * 60.00351 * 13 11 9 17 17 C 1.47011 * 110.75227 * 301.38206 * 6 5 3 18 18 H 1.08993 * 109.50645 * 178.55379 * 17 6 5 19 19 C 1.53003 * 109.50515 * 298.68316 * 17 6 5 20 20 C 1.53093 * 109.25681 * 58.61771 * 17 6 5 21 21 O 1.43012 * 109.26047 * 303.14719 * 20 17 6 22 22 H 1.09002 * 109.47051 * 300.00149 * 1 2 3 23 23 H 1.08999 * 109.46970 * 60.00061 * 1 2 3 24 24 H 1.09000 * 109.47262 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47051 * 239.99851 * 2 1 3 26 26 H 1.08999 * 109.46970 * 119.99939 * 2 1 3 27 27 H 1.09004 * 109.50549 * 56.84348 * 5 3 2 28 28 H 1.08999 * 109.54070 * 296.74184 * 5 3 2 29 29 H 1.09007 * 109.47049 * 55.91804 * 7 6 5 30 30 H 1.09000 * 109.47149 * 295.91508 * 7 6 5 31 31 H 1.09003 * 109.46946 * 54.54720 * 8 7 6 32 32 H 1.09000 * 109.47511 * 294.53847 * 8 7 6 33 33 H 0.97002 * 119.99803 * 359.97438 * 12 11 9 34 34 H 1.08995 * 109.47039 * 64.97443 * 19 17 6 35 35 H 1.09005 * 109.47146 * 184.97127 * 19 17 6 36 36 H 1.08997 * 109.47498 * 304.96763 * 19 17 6 37 37 H 1.09001 * 109.50353 * 183.21812 * 20 17 6 38 38 H 1.08999 * 109.54265 * 63.11323 * 20 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6045 1.9825 0.8408 5 6 3.5658 1.4453 0.1258 6 7 4.0562 2.8290 0.0477 7 6 5.5140 2.8814 0.2213 8 6 5.9986 4.3204 0.0330 9 6 7.4715 4.3989 0.3422 10 1 8.0083 3.5112 0.6425 11 6 8.1339 5.6038 0.2406 12 7 7.4803 6.6847 -0.1256 13 14 9.9597 5.7010 0.6231 14 1 10.4301 7.0978 0.4405 15 1 10.1943 5.2799 2.0277 16 1 10.7062 4.8030 -0.2941 17 6 3.6539 3.4535 -1.2209 18 1 4.0053 4.4849 -1.2464 19 6 4.2638 2.6760 -2.3890 20 6 2.1273 3.4305 -1.3331 21 8 1.6665 2.0811 -1.2239 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.9989 0.8593 -0.6849 28 1 3.8535 1.0106 1.0830 29 1 5.9913 2.2377 -0.5176 30 1 5.7732 2.5389 1.2231 31 1 5.4504 4.9794 0.7063 32 1 5.8268 4.6297 -0.9980 33 1 6.5323 6.6341 -0.3246 34 1 3.8428 1.6711 -2.4159 35 1 4.0389 3.1893 -3.3240 36 1 5.3443 2.6140 -2.2595 37 1 1.8270 3.8407 -2.2974 38 1 1.6937 4.0292 -0.5321 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000403905932.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:41 Heat of formation + Delta-G solvation = -82.668604 kcal Electronic energy + Delta-G solvation = -16670.178634 eV Core-core repulsion = 14125.024647 eV Total energy + Delta-G solvation = -2545.153986 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.18789 -37.71540 -35.44937 -35.03711 -32.23902 -31.54103 -28.52460 -27.46075 -25.64216 -24.68475 -23.37458 -21.85524 -20.11724 -18.98103 -17.60946 -17.43038 -16.72454 -16.00505 -15.74188 -15.58890 -15.31844 -14.94744 -14.59086 -14.14766 -13.87069 -13.59557 -13.48704 -13.15120 -12.85077 -12.73430 -12.59080 -12.30781 -12.05074 -11.96084 -11.90851 -11.86173 -11.60999 -11.20098 -10.76665 -10.55758 -10.51160 -9.31354 -8.71202 -6.41480 1.51569 1.60090 1.79548 2.54064 2.73727 2.88165 3.14501 3.72198 3.83641 3.94299 4.05092 4.12508 4.27253 4.29646 4.38768 4.43883 4.53158 4.55449 4.59631 4.62424 4.77068 4.83832 4.87282 4.92601 5.01572 5.10627 5.11978 5.24693 5.28081 5.38021 5.45251 5.84238 6.07501 6.09338 6.16118 6.20695 6.55575 7.40504 8.69897 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.054961 B = 0.005661 C = 0.005409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.331933 B = 4944.559608 C = 5175.056826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.111 4.111 3 C 0.095 3.905 4 H 0.061 0.939 5 C 0.020 3.980 6 N -0.542 5.542 7 C 0.085 3.915 8 C 0.021 3.979 9 C -0.621 4.621 10 H 0.049 0.951 11 C -0.036 4.036 12 N -0.935 5.935 13 Si 1.118 2.882 14 H -0.282 1.282 15 H -0.269 1.269 16 H -0.269 1.269 17 C 0.038 3.962 18 H 0.072 0.928 19 C -0.169 4.169 20 C 0.077 3.923 21 O -0.384 6.384 22 H 0.055 0.945 23 H 0.050 0.950 24 H 0.069 0.931 25 H 0.067 0.933 26 H 0.092 0.908 27 H 0.040 0.960 28 H 0.088 0.912 29 H 0.023 0.977 30 H 0.061 0.939 31 H -0.011 1.011 32 H -0.005 1.005 33 H 0.255 0.745 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.037 0.963 37 H 0.115 0.885 38 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.814 -12.353 -1.160 17.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.148 4.148 3 C 0.037 3.963 4 H 0.079 0.921 5 C -0.108 4.108 6 N -0.267 5.267 7 C -0.043 4.043 8 C -0.016 4.016 9 C -0.660 4.660 10 H 0.068 0.932 11 C -0.233 4.233 12 N -0.572 5.572 13 Si 0.939 3.061 14 H -0.208 1.208 15 H -0.194 1.194 16 H -0.194 1.194 17 C -0.071 4.071 18 H 0.090 0.910 19 C -0.227 4.227 20 C 0.000 4.000 21 O -0.303 6.303 22 H 0.074 0.926 23 H 0.069 0.931 24 H 0.088 0.912 25 H 0.086 0.914 26 H 0.110 0.890 27 H 0.058 0.942 28 H 0.106 0.894 29 H 0.041 0.959 30 H 0.080 0.920 31 H 0.007 0.993 32 H 0.014 0.986 33 H 0.064 0.936 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.056 0.944 37 H 0.133 0.867 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.875 -11.164 -0.838 15.608 hybrid contribution -0.592 -0.928 -0.562 1.236 sum -11.466 -12.092 -1.400 16.723 Atomic orbital electron populations 1.21667 0.94319 1.02265 1.01887 1.21536 0.97391 0.92525 1.03394 1.22295 0.91760 0.95280 0.86942 0.92104 1.22884 0.96774 0.89121 1.01995 1.62514 1.12864 1.17938 1.33339 1.21851 0.85702 0.97347 0.99356 1.19115 0.95144 0.92897 0.94468 1.22432 0.95684 0.97440 1.50417 0.93221 1.27430 1.10740 0.91848 0.93322 1.70917 1.10786 1.30936 1.44580 0.82928 0.69230 0.76388 0.77565 1.20783 1.19369 1.19427 1.22400 0.97285 0.99122 0.88296 0.91036 1.22207 0.99978 1.01427 0.99106 1.22647 0.90620 0.83667 1.03034 1.87914 1.76503 1.26496 1.39361 0.92617 0.93103 0.91239 0.91399 0.88975 0.94213 0.89396 0.95930 0.92028 0.99291 0.98647 0.93593 0.91545 0.91066 0.94427 0.86679 0.92636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 9.81 71.98 0.71 -1.75 16 2 C -0.11 -2.12 5.64 30.59 0.17 -1.95 16 3 C 0.10 2.42 2.80 30.63 0.09 2.50 16 4 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 5 C 0.02 0.60 4.55 86.32 0.39 0.99 16 6 N -0.54 -20.03 4.79 -869.99 -4.16 -24.20 16 7 C 0.08 3.70 4.52 86.30 0.39 4.09 16 8 C 0.02 1.12 3.59 29.85 0.11 1.23 16 9 C -0.62 -36.20 9.11 25.60 0.23 -35.96 16 10 H 0.05 2.81 7.74 -2.91 -0.02 2.78 16 11 C -0.04 -2.10 5.46 84.65 0.46 -1.64 16 12 N -0.94 -58.77 13.65 21.45 0.29 -58.47 16 13 Si 1.12 50.68 29.90 68.60 2.05 52.73 16 14 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 15 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 16 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 17 C 0.04 1.31 2.47 44.93 0.11 1.43 16 18 H 0.07 2.88 6.18 -2.39 -0.01 2.87 16 19 C -0.17 -5.53 8.39 71.98 0.60 -4.93 16 20 C 0.08 2.19 6.41 72.01 0.46 2.65 16 21 O -0.38 -10.66 9.39 -148.98 -1.40 -12.06 16 22 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 23 H 0.05 0.98 7.83 -2.39 -0.02 0.96 16 24 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.09 1.46 8.14 -2.39 -0.02 1.45 16 27 H 0.04 1.19 6.50 -2.39 -0.02 1.18 16 28 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 29 H 0.02 0.99 6.67 -2.38 -0.02 0.97 16 30 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 31 H -0.01 -0.65 8.01 -2.39 -0.02 -0.67 16 32 H 0.00 -0.26 6.44 -2.39 -0.02 -0.27 16 33 H 0.25 16.25 7.22 -92.71 -0.67 15.58 16 34 H 0.07 2.03 6.20 -2.39 -0.01 2.02 16 35 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 36 H 0.04 1.41 6.39 -2.39 -0.02 1.39 16 37 H 0.12 2.74 8.14 -2.39 -0.02 2.72 16 38 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -65.81 292.42 1.61 -64.20 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: 1.10 Total: 11.13 kcal Atomic # 6 Polarization: -37.07 SS G_CDS: 3.73 Total: -33.34 kcal Atomic # 7 Polarization: -78.80 SS G_CDS: -3.87 Total: -82.67 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: -1.40 Total: -12.06 kcal Atomic # 14 Polarization: 50.68 SS G_CDS: 2.05 Total: 52.73 kcal Total: -65.81 1.61 -64.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403905932.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.468 kcal (2) G-P(sol) polarization free energy of solvation -65.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds