Wall clock time and date at job start Sun Mar 29 2020 21:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47057 * 2 1 4 4 H 1.09006 * 109.50838 * 304.08069 * 3 2 1 5 5 C 1.53093 * 109.54593 * 64.19435 * 3 2 1 6 6 O 1.43017 * 109.25789 * 176.80830 * 5 3 2 7 7 C 1.43017 * 113.73489 * 301.32217 * 6 5 3 8 8 C 1.53003 * 109.50317 * 178.60663 * 7 6 5 9 9 C 1.53004 * 109.51051 * 298.69396 * 7 6 5 10 10 C 1.53095 * 109.25915 * 58.67706 * 7 6 5 11 11 N 1.47013 * 109.25829 * 303.15131 * 10 7 6 12 12 C 1.46894 * 111.00151 * 182.39148 * 11 10 7 13 13 C 1.50699 * 109.47088 * 52.87136 * 12 11 10 14 14 H 1.07998 * 120.00353 * 356.08270 * 13 12 11 15 15 C 1.37879 * 119.99799 * 175.81276 * 13 12 11 16 16 N 1.31517 * 119.99740 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 120.00053 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.47251 * 90.00250 * 17 15 13 19 19 H 1.48506 * 109.46884 * 209.99549 * 17 15 13 20 20 H 1.48492 * 109.47337 * 329.99718 * 17 15 13 21 21 H 1.09000 * 109.47400 * 294.85681 * 1 2 3 22 22 H 1.09000 * 109.47097 * 54.85806 * 1 2 3 23 23 H 1.09005 * 109.47339 * 174.85488 * 1 2 3 24 24 H 1.09001 * 109.47537 * 239.99577 * 2 1 3 25 25 H 1.09003 * 109.46914 * 119.99919 * 2 1 3 26 26 H 1.09005 * 109.50415 * 296.73798 * 5 3 2 27 27 H 1.08995 * 109.50761 * 56.82370 * 5 3 2 28 28 H 1.09009 * 109.46718 * 60.00701 * 8 7 6 29 29 H 1.08998 * 109.46786 * 179.97438 * 8 7 6 30 30 H 1.08995 * 109.47637 * 300.00260 * 8 7 6 31 31 H 1.09002 * 109.46330 * 60.00154 * 9 7 6 32 32 H 1.08993 * 109.46842 * 180.02562 * 9 7 6 33 33 H 1.08996 * 109.47099 * 300.00075 * 9 7 6 34 34 H 1.08994 * 109.50862 * 183.21167 * 10 7 6 35 35 H 1.09002 * 109.50468 * 63.08099 * 10 7 6 36 36 H 1.08998 * 109.47466 * 292.86483 * 12 11 10 37 37 H 1.09006 * 109.47309 * 172.86547 * 12 11 10 38 38 H 0.97007 * 119.99630 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6184 1.9776 -0.8510 5 6 1.6185 2.1347 1.2988 6 8 2.1610 3.4577 1.3257 7 6 3.5877 3.4968 1.2342 8 6 4.0601 4.9521 1.2368 9 6 4.1968 2.7599 2.4288 10 6 4.0292 2.8184 -0.0653 11 7 3.5069 1.4445 -0.0967 12 6 3.9560 0.7381 -1.3038 13 6 5.4559 0.8345 -1.4135 14 1 6.0132 1.4201 -0.6974 15 6 6.1172 0.1707 -2.4250 16 7 7.4261 0.2553 -2.5210 17 14 5.1540 -0.8488 -3.6588 18 1 4.7657 0.0046 -4.8103 19 1 5.9979 -1.9728 -4.1382 20 1 3.9330 -1.3888 -3.0089 21 1 -0.3634 0.4320 0.9324 22 1 -0.3633 0.5915 -0.8403 23 1 -0.3634 -1.0236 -0.0922 24 1 1.8934 -0.5139 -0.8899 25 1 1.8932 -0.5138 0.8900 26 1 0.5308 2.1863 1.3474 27 1 1.9944 1.5690 2.1513 28 1 3.7422 5.4356 2.1606 29 1 5.1475 4.9812 1.1675 30 1 3.6272 5.4762 0.3847 31 1 3.8611 1.7229 2.4255 32 1 5.2840 2.7905 2.3587 33 1 3.8790 3.2418 3.3534 34 1 5.1179 2.7951 -0.1121 35 1 3.6394 3.3755 -0.9173 36 1 3.4974 1.1920 -2.1823 37 1 3.6630 -0.3100 -1.2416 38 1 7.8914 -0.2121 -3.2324 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000403918955.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:02 Heat of formation + Delta-G solvation = -48.685691 kcal Electronic energy + Delta-G solvation = -17175.914873 eV Core-core repulsion = 14632.234497 eV Total energy + Delta-G solvation = -2543.680377 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.73054 -35.96315 -34.15823 -32.54804 -31.69767 -28.50307 -27.10350 -26.65152 -25.16131 -23.17394 -21.23707 -20.11507 -18.76786 -17.04380 -15.86129 -15.63168 -14.79702 -14.59576 -14.17387 -13.83278 -13.69680 -13.18522 -12.85801 -12.52543 -12.38840 -12.22757 -11.88496 -11.71382 -11.55055 -11.37301 -11.05062 -10.86643 -10.72426 -10.65905 -10.55399 -10.31643 -9.84016 -9.73432 -9.14397 -8.89879 -8.61171 -7.41129 -6.09156 -4.07144 3.25898 3.33576 3.35231 4.10095 4.38760 4.58821 5.12533 5.24274 5.25875 5.29600 5.37155 5.44002 5.50026 5.64287 5.71817 5.86455 5.92147 5.96833 6.05216 6.07543 6.18309 6.18514 6.31089 6.33604 6.45448 6.51200 6.55232 6.66298 6.76188 6.86222 7.00197 7.52250 7.62489 7.86831 8.02096 8.60240 8.96061 9.52175 11.03333 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.023665 B = 0.010301 C = 0.007710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.912555 B = 2717.547448 C = 3630.579374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.119 4.119 3 C 0.046 3.954 4 H 0.037 0.963 5 C 0.070 3.930 6 O -0.385 6.385 7 C 0.109 3.891 8 C -0.135 4.135 9 C -0.163 4.163 10 C 0.042 3.958 11 N -0.520 5.520 12 C 0.159 3.841 13 C -0.515 4.515 14 H 0.082 0.918 15 C 0.070 3.930 16 N -0.899 5.899 17 Si 0.875 3.125 18 H -0.278 1.278 19 H -0.285 1.285 20 H -0.266 1.266 21 H 0.053 0.947 22 H 0.051 0.949 23 H 0.053 0.947 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.087 0.913 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.072 0.928 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.047 0.953 34 H 0.102 0.898 35 H 0.028 0.972 36 H -0.019 1.019 37 H 0.037 0.963 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.887 3.506 6.808 13.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.157 4.157 3 C -0.064 4.064 4 H 0.055 0.945 5 C -0.007 4.007 6 O -0.305 6.305 7 C 0.070 3.930 8 C -0.192 4.192 9 C -0.220 4.220 10 C -0.086 4.086 11 N -0.244 5.244 12 C 0.033 3.967 13 C -0.553 4.553 14 H 0.100 0.900 15 C -0.132 4.132 16 N -0.538 5.538 17 Si 0.702 3.298 18 H -0.204 1.204 19 H -0.211 1.211 20 H -0.191 1.191 21 H 0.072 0.928 22 H 0.070 0.930 23 H 0.072 0.928 24 H 0.089 0.911 25 H 0.088 0.912 26 H 0.105 0.895 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.091 0.909 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.067 0.933 34 H 0.120 0.880 35 H 0.046 0.954 36 H -0.001 1.001 37 H 0.054 0.946 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.642 3.354 7.118 13.235 hybrid contribution -0.540 -0.466 -1.614 1.764 sum -11.182 2.888 5.504 12.794 Atomic orbital electron populations 1.21809 0.96186 1.01371 1.01455 1.21559 0.94687 0.96083 1.03334 1.22307 0.90649 0.96078 0.97333 0.94463 1.22670 0.97622 0.83735 0.96650 1.87924 1.20812 1.27206 1.94529 1.21679 0.80475 0.95577 0.95307 1.21714 1.01265 0.94079 1.02172 1.22214 1.01480 1.01738 0.96610 1.22675 1.02706 0.88644 0.94595 1.62205 1.05730 1.14731 1.41768 1.20238 0.96901 0.94120 0.85429 1.21103 0.89459 1.31314 1.13397 0.89965 1.24894 0.94740 0.96148 0.97381 1.69893 1.07176 1.43533 1.33175 0.86869 0.80448 0.80520 0.81961 1.20379 1.21130 1.19083 0.92827 0.92966 0.92810 0.91142 0.91199 0.89473 0.92468 0.92246 0.90920 0.92249 0.90947 0.91643 0.93345 0.88020 0.95351 1.00129 0.94556 0.92630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.52 37.15 0.35 -1.50 16 2 C -0.12 -1.88 5.23 -26.74 -0.14 -2.02 16 3 C 0.05 0.81 2.06 -67.60 -0.14 0.67 16 4 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 5 C 0.07 1.10 5.55 37.21 0.21 1.30 16 6 O -0.39 -6.65 10.28 -35.23 -0.36 -7.01 16 7 C 0.11 1.84 1.11 -90.57 -0.10 1.74 16 8 C -0.13 -1.93 8.85 37.16 0.33 -1.60 16 9 C -0.16 -2.60 8.17 37.16 0.30 -2.29 16 10 C 0.04 0.85 4.01 -3.71 -0.01 0.83 16 11 N -0.52 -10.92 4.00 -227.78 -0.91 -11.83 16 12 C 0.16 3.86 3.41 -4.98 -0.02 3.84 16 13 C -0.51 -14.39 9.09 -34.44 -0.31 -14.70 16 14 H 0.08 2.46 6.27 -52.49 -0.33 2.13 16 15 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 16 N -0.90 -27.23 13.96 55.43 0.77 -26.46 16 17 Si 0.87 21.46 27.55 -169.99 -4.68 16.78 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.27 -6.26 6.42 56.52 0.36 -5.90 16 21 H 0.05 0.58 6.88 -51.93 -0.36 0.23 16 22 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 23 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 24 H 0.07 1.24 6.23 -51.93 -0.32 0.92 16 25 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 26 H 0.09 1.16 6.83 -51.93 -0.35 0.81 16 27 H 0.06 0.88 6.50 -51.93 -0.34 0.54 16 28 H 0.06 0.76 8.14 -51.92 -0.42 0.34 16 29 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.07 1.24 6.13 -51.93 -0.32 0.92 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.10 2.25 5.92 -51.93 -0.31 1.94 16 35 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 36 H -0.02 -0.47 7.78 -51.93 -0.40 -0.87 16 37 H 0.04 0.89 5.14 -51.93 -0.27 0.62 16 38 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 286.33 15.07 4.31 4.31 Total: -1.00 -29.84 286.33 -6.90 -36.74 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -6.40 Total: -0.72 kcal Atomic # 6 Polarization: -12.18 SS G_CDS: 0.37 Total: -11.81 kcal Atomic # 7 Polarization: -38.15 SS G_CDS: -0.14 Total: -38.29 kcal Atomic # 8 Polarization: -6.65 SS G_CDS: -0.36 Total: -7.01 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.68 Total: 16.78 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -29.84 -6.90 -36.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403918955.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.948 kcal (2) G-P(sol) polarization free energy of solvation -29.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds