Wall clock time and date at job start Sun Mar 29 2020 21:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47057 * 2 1 4 4 H 1.09006 * 109.50838 * 304.08069 * 3 2 1 5 5 C 1.53093 * 109.54593 * 64.19435 * 3 2 1 6 6 O 1.43017 * 109.25789 * 176.80830 * 5 3 2 7 7 C 1.43017 * 113.73489 * 301.32217 * 6 5 3 8 8 C 1.53003 * 109.50317 * 178.60663 * 7 6 5 9 9 C 1.53004 * 109.51051 * 298.69396 * 7 6 5 10 10 C 1.53095 * 109.25915 * 58.67706 * 7 6 5 11 11 N 1.47013 * 109.25829 * 303.15131 * 10 7 6 12 12 C 1.46894 * 111.00151 * 182.39148 * 11 10 7 13 13 C 1.50699 * 109.47088 * 52.87136 * 12 11 10 14 14 H 1.07998 * 120.00353 * 356.08270 * 13 12 11 15 15 C 1.37879 * 119.99799 * 175.81276 * 13 12 11 16 16 N 1.31517 * 119.99740 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 120.00053 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.47251 * 90.00250 * 17 15 13 19 19 H 1.48506 * 109.46884 * 209.99549 * 17 15 13 20 20 H 1.48492 * 109.47337 * 329.99718 * 17 15 13 21 21 H 1.09000 * 109.47400 * 294.85681 * 1 2 3 22 22 H 1.09000 * 109.47097 * 54.85806 * 1 2 3 23 23 H 1.09005 * 109.47339 * 174.85488 * 1 2 3 24 24 H 1.09001 * 109.47537 * 239.99577 * 2 1 3 25 25 H 1.09003 * 109.46914 * 119.99919 * 2 1 3 26 26 H 1.09005 * 109.50415 * 296.73798 * 5 3 2 27 27 H 1.08995 * 109.50761 * 56.82370 * 5 3 2 28 28 H 1.09009 * 109.46718 * 60.00701 * 8 7 6 29 29 H 1.08998 * 109.46786 * 179.97438 * 8 7 6 30 30 H 1.08995 * 109.47637 * 300.00260 * 8 7 6 31 31 H 1.09002 * 109.46330 * 60.00154 * 9 7 6 32 32 H 1.08993 * 109.46842 * 180.02562 * 9 7 6 33 33 H 1.08996 * 109.47099 * 300.00075 * 9 7 6 34 34 H 1.08994 * 109.50862 * 183.21167 * 10 7 6 35 35 H 1.09002 * 109.50468 * 63.08099 * 10 7 6 36 36 H 1.08998 * 109.47466 * 292.86483 * 12 11 10 37 37 H 1.09006 * 109.47309 * 172.86547 * 12 11 10 38 38 H 0.97007 * 119.99630 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6184 1.9776 -0.8510 5 6 1.6185 2.1347 1.2988 6 8 2.1610 3.4577 1.3257 7 6 3.5877 3.4968 1.2342 8 6 4.0601 4.9521 1.2368 9 6 4.1968 2.7599 2.4288 10 6 4.0292 2.8184 -0.0653 11 7 3.5069 1.4445 -0.0967 12 6 3.9560 0.7381 -1.3038 13 6 5.4559 0.8345 -1.4135 14 1 6.0132 1.4201 -0.6974 15 6 6.1172 0.1707 -2.4250 16 7 7.4261 0.2553 -2.5210 17 14 5.1540 -0.8488 -3.6588 18 1 4.7657 0.0046 -4.8103 19 1 5.9979 -1.9728 -4.1382 20 1 3.9330 -1.3888 -3.0089 21 1 -0.3634 0.4320 0.9324 22 1 -0.3633 0.5915 -0.8403 23 1 -0.3634 -1.0236 -0.0922 24 1 1.8934 -0.5139 -0.8899 25 1 1.8932 -0.5138 0.8900 26 1 0.5308 2.1863 1.3474 27 1 1.9944 1.5690 2.1513 28 1 3.7422 5.4356 2.1606 29 1 5.1475 4.9812 1.1675 30 1 3.6272 5.4762 0.3847 31 1 3.8611 1.7229 2.4255 32 1 5.2840 2.7905 2.3587 33 1 3.8790 3.2418 3.3534 34 1 5.1179 2.7951 -0.1121 35 1 3.6394 3.3755 -0.9173 36 1 3.4974 1.1920 -2.1823 37 1 3.6630 -0.3100 -1.2416 38 1 7.8914 -0.2121 -3.2324 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000403918955.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:02 Heat of formation + Delta-G solvation = -68.893959 kcal Electronic energy + Delta-G solvation = -17176.791170 eV Core-core repulsion = 14632.234497 eV Total energy + Delta-G solvation = -2544.556673 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.16851 -37.46042 -35.65409 -34.49071 -33.13385 -30.22467 -28.55383 -27.92397 -26.78837 -24.56814 -22.96942 -21.59290 -20.18419 -19.09157 -17.33525 -17.13032 -16.44050 -16.17914 -15.68179 -15.36935 -15.09821 -14.85449 -14.35342 -14.20540 -13.82193 -13.58635 -13.19195 -13.01759 -12.90260 -12.76910 -12.63820 -12.51658 -12.29970 -12.10504 -12.00586 -11.79249 -11.60432 -11.21977 -11.04806 -10.82403 -10.34800 -9.12500 -8.31427 -6.34993 1.30665 1.32041 1.42632 2.30660 2.79890 2.96725 3.10287 3.79867 3.93212 4.00705 4.05154 4.11423 4.24643 4.45318 4.55223 4.58658 4.66143 4.71227 4.79000 4.82090 4.86541 4.93415 4.97013 5.02622 5.05506 5.09868 5.16991 5.25365 5.30032 5.36496 5.45970 5.51921 5.93826 6.21540 6.31484 6.59463 6.70695 7.28513 8.84050 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.023665 B = 0.010301 C = 0.007710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.912555 B = 2717.547448 C = 3630.579374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.116 4.116 3 C 0.043 3.957 4 H 0.026 0.974 5 C 0.072 3.928 6 O -0.390 6.390 7 C 0.112 3.888 8 C -0.132 4.132 9 C -0.157 4.157 10 C 0.045 3.955 11 N -0.528 5.528 12 C 0.171 3.829 13 C -0.521 4.521 14 H 0.048 0.952 15 C 0.013 3.987 16 N -0.943 5.943 17 Si 0.941 3.059 18 H -0.272 1.272 19 H -0.279 1.279 20 H -0.249 1.249 21 H 0.073 0.927 22 H 0.052 0.948 23 H 0.067 0.933 24 H 0.047 0.953 25 H 0.071 0.929 26 H 0.120 0.880 27 H 0.064 0.936 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.012 0.988 36 H -0.027 1.027 37 H 0.039 0.961 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.358 3.268 7.548 15.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.154 4.154 3 C -0.066 4.066 4 H 0.044 0.956 5 C -0.005 4.005 6 O -0.309 6.309 7 C 0.072 3.928 8 C -0.190 4.190 9 C -0.215 4.215 10 C -0.083 4.083 11 N -0.252 5.252 12 C 0.044 3.956 13 C -0.559 4.559 14 H 0.066 0.934 15 C -0.185 4.185 16 N -0.584 5.584 17 Si 0.765 3.235 18 H -0.197 1.197 19 H -0.204 1.204 20 H -0.173 1.173 21 H 0.092 0.908 22 H 0.071 0.929 23 H 0.087 0.913 24 H 0.066 0.934 25 H 0.089 0.911 26 H 0.137 0.863 27 H 0.082 0.918 28 H 0.100 0.900 29 H 0.095 0.905 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.031 0.969 36 H -0.009 1.009 37 H 0.057 0.943 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.134 3.124 7.876 15.630 hybrid contribution 0.267 -0.344 -1.793 1.846 sum -12.867 2.780 6.083 14.501 Atomic orbital electron populations 1.21763 0.93083 1.02645 1.02578 1.21546 0.97354 0.94250 1.02283 1.22495 0.88047 0.97782 0.98299 0.95573 1.22828 0.99395 0.82935 0.95331 1.87928 1.20541 1.28117 1.94337 1.21691 0.80725 0.96833 0.93517 1.21722 1.01550 0.92378 1.03301 1.22152 1.01009 1.01036 0.97263 1.22624 1.00827 0.88546 0.96348 1.62163 1.08380 1.14934 1.39771 1.19979 0.94281 0.94667 0.86649 1.21340 0.91479 1.30492 1.12594 0.93402 1.25777 0.95670 0.97527 0.99544 1.70033 1.09041 1.44959 1.34360 0.85810 0.79529 0.78907 0.79304 1.19700 1.20425 1.17263 0.90827 0.92882 0.91348 0.93376 0.91054 0.86251 0.91794 0.90003 0.90528 0.92371 0.92276 0.92286 0.90784 0.91069 0.96944 1.00929 0.94275 0.92392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 9.52 71.98 0.69 -2.36 16 2 C -0.12 -3.46 5.23 30.59 0.16 -3.30 16 3 C 0.04 1.45 2.06 44.92 0.09 1.55 16 4 H 0.03 0.96 8.14 -2.38 -0.02 0.94 16 5 C 0.07 2.05 5.55 72.01 0.40 2.45 16 6 O -0.39 -12.56 10.28 -148.98 -1.53 -14.09 16 7 C 0.11 3.68 1.11 -10.76 -0.01 3.66 16 8 C -0.13 -3.60 8.85 71.98 0.64 -2.97 16 9 C -0.16 -4.82 8.17 71.98 0.59 -4.23 16 10 C 0.05 1.86 4.01 86.31 0.35 2.21 16 11 N -0.53 -22.36 4.00 -874.56 -3.50 -25.86 16 12 C 0.17 8.40 3.41 85.56 0.29 8.69 16 13 C -0.52 -30.15 9.09 25.60 0.23 -29.91 16 14 H 0.05 3.03 6.27 -2.91 -0.02 3.02 16 15 C 0.01 0.74 5.47 84.65 0.46 1.20 16 16 N -0.94 -58.79 13.96 21.45 0.30 -58.49 16 17 Si 0.94 44.43 27.55 68.60 1.89 46.32 16 18 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 19 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 20 H -0.25 -10.97 6.42 99.48 0.64 -10.33 16 21 H 0.07 1.28 6.88 -2.39 -0.02 1.27 16 22 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 23 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 24 H 0.05 1.63 6.23 -2.39 -0.01 1.62 16 25 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 26 H 0.12 2.67 6.83 -2.38 -0.02 2.66 16 27 H 0.06 1.77 6.50 -2.39 -0.02 1.76 16 28 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 29 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.06 1.96 6.13 -2.39 -0.01 1.94 16 32 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.07 3.35 5.92 -2.39 -0.01 3.33 16 35 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 36 H -0.03 -1.35 7.78 -2.39 -0.02 -1.37 16 37 H 0.04 1.90 5.14 -2.38 -0.01 1.89 16 38 H 0.27 15.53 8.31 -92.70 -0.77 14.76 16 Total: -1.00 -65.46 286.33 1.99 -63.47 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: 0.95 Total: 11.66 kcal Atomic # 6 Polarization: -26.90 SS G_CDS: 3.88 Total: -23.01 kcal Atomic # 7 Polarization: -81.15 SS G_CDS: -3.20 Total: -84.35 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: -1.53 Total: -14.09 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 1.89 Total: 46.32 kcal Total: -65.46 1.99 -63.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403918955.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.422 kcal (2) G-P(sol) polarization free energy of solvation -65.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds