Wall clock time and date at job start Sun Mar 29 2020 21:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.47197 * 2 1 4 4 H 1.09004 * 109.54289 * 55.10728 * 3 2 1 5 5 C 1.53092 * 109.51054 * 175.21442 * 3 2 1 6 6 N 1.47006 * 109.26296 * 176.78440 * 5 3 2 7 7 C 1.46902 * 111.00451 * 177.61102 * 6 5 3 8 8 C 1.50701 * 109.46797 * 284.30423 * 7 6 5 9 9 H 1.07995 * 120.00362 * 359.97438 * 8 7 6 10 10 C 1.37877 * 119.99893 * 179.97438 * 8 7 6 11 11 N 1.31507 * 120.00168 * 179.97438 * 10 8 7 12 12 Si 1.86805 * 119.99661 * 359.97438 * 10 8 7 13 13 H 1.48496 * 109.47010 * 90.00604 * 12 10 8 14 14 H 1.48508 * 109.46702 * 209.99700 * 12 10 8 15 15 H 1.48497 * 109.47504 * 329.99682 * 12 10 8 16 16 C 1.47018 * 110.75512 * 301.38762 * 6 5 3 17 17 H 1.08996 * 109.50926 * 178.54574 * 16 6 5 18 18 C 1.53000 * 109.50346 * 298.68130 * 16 6 5 19 19 C 1.53008 * 109.46947 * 185.56607 * 18 16 6 20 20 C 1.53095 * 109.25649 * 58.61309 * 16 6 5 21 21 O 1.43014 * 109.50705 * 295.00179 * 3 2 1 22 22 H 1.08994 * 109.46705 * 300.00098 * 1 2 3 23 23 H 1.09007 * 109.46874 * 59.99900 * 1 2 3 24 24 H 1.08998 * 109.46779 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46814 * 240.00601 * 2 1 3 26 26 H 1.08995 * 109.47309 * 120.00000 * 2 1 3 27 27 H 1.09002 * 109.50922 * 296.72620 * 5 3 2 28 28 H 1.09007 * 109.49993 * 56.85138 * 5 3 2 29 29 H 1.09004 * 109.46955 * 44.29827 * 7 6 5 30 30 H 1.08992 * 109.47586 * 164.29905 * 7 6 5 31 31 H 0.97003 * 120.00390 * 180.02562 * 11 10 8 32 32 H 1.08997 * 109.47198 * 305.56282 * 18 16 6 33 33 H 1.08998 * 109.47534 * 65.57131 * 18 16 6 34 34 H 1.08997 * 109.47190 * 294.10248 * 19 18 16 35 35 H 1.08999 * 109.46774 * 54.10436 * 19 18 16 36 36 H 1.08998 * 109.46793 * 174.10406 * 19 18 16 37 37 H 1.09000 * 109.51270 * 183.22021 * 20 16 6 38 38 H 1.08995 * 109.51062 * 63.08593 * 20 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6076 1.9821 0.8426 5 6 3.5663 1.4452 0.1204 6 7 4.0565 2.8289 0.0423 7 6 5.5149 2.8812 0.2107 8 6 5.8600 2.6840 1.6644 9 1 5.0746 2.5352 2.3905 10 6 7.1786 2.6936 2.0673 11 7 7.4798 2.5220 3.3358 12 14 8.5371 2.9502 0.8111 13 1 8.8248 4.4014 0.6826 14 1 9.7632 2.2402 1.2560 15 1 8.1036 2.4131 -0.5037 16 6 3.6496 3.4551 -1.2241 17 1 4.0009 4.4866 -1.2494 18 6 4.2554 2.6792 -2.3953 19 6 3.9477 3.4093 -3.7043 20 6 2.1226 3.4323 -1.3309 21 8 1.6621 2.0827 -1.2217 22 1 -0.3632 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8934 -0.5137 -0.8901 26 1 1.8934 -0.5138 0.8899 27 1 3.8568 1.0095 1.0764 28 1 3.9964 0.8603 -0.6927 29 1 5.9776 2.0926 -0.3827 30 1 5.8846 3.8509 -0.1222 31 1 8.4074 2.5291 3.6194 32 1 5.3351 2.6078 -2.2643 33 1 3.8263 1.6777 -2.4285 34 1 2.8735 3.3890 -3.8878 35 1 4.2844 4.4434 -3.6313 36 1 4.4660 2.9154 -4.5262 37 1 1.8188 3.8437 -2.2935 38 1 1.6925 4.0297 -0.5271 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000403927441.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:48 Heat of formation + Delta-G solvation = -55.330894 kcal Electronic energy + Delta-G solvation = -16955.943279 eV Core-core repulsion = 14411.974745 eV Total energy + Delta-G solvation = -2543.968534 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.68315 -35.85575 -34.07660 -32.77135 -31.96423 -28.78102 -28.42471 -25.50735 -24.15864 -22.78198 -21.61997 -20.62967 -18.57907 -16.87739 -16.19397 -15.86155 -15.10838 -14.68258 -14.15879 -13.94647 -13.69663 -13.30594 -13.12481 -12.99290 -12.50953 -12.12289 -11.92588 -11.56813 -11.39560 -11.34567 -10.91831 -10.84876 -10.77419 -10.75071 -10.46136 -10.25477 -9.95753 -9.80523 -9.34118 -9.00413 -8.57876 -7.36909 -6.06519 -4.03543 3.26374 3.34035 3.35700 4.08616 4.40186 4.60016 5.10779 5.18139 5.20726 5.25497 5.28576 5.39845 5.49730 5.62532 5.65471 5.74938 5.77357 5.85878 5.98710 6.02787 6.09101 6.13915 6.20489 6.22907 6.36716 6.39755 6.42638 6.57588 6.63935 6.80462 6.92935 7.54220 7.60287 7.84486 7.98593 8.64454 9.03078 9.55402 11.06739 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026069 B = 0.008813 C = 0.007122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.803233 B = 3176.473950 C = 3930.606142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.115 4.115 3 C 0.092 3.908 4 H 0.063 0.937 5 C 0.032 3.968 6 N -0.519 5.519 7 C 0.164 3.836 8 C -0.507 4.507 9 H 0.080 0.920 10 C 0.068 3.932 11 N -0.900 5.900 12 Si 0.873 3.127 13 H -0.276 1.276 14 H -0.286 1.286 15 H -0.268 1.268 16 C 0.044 3.956 17 H 0.084 0.916 18 C -0.155 4.155 19 C -0.145 4.145 20 C 0.072 3.928 21 O -0.384 6.384 22 H 0.051 0.949 23 H 0.059 0.941 24 H 0.049 0.951 25 H 0.066 0.934 26 H 0.077 0.923 27 H 0.091 0.909 28 H 0.033 0.967 29 H -0.007 1.007 30 H 0.022 0.978 31 H 0.263 0.737 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.054 0.946 35 H 0.051 0.949 36 H 0.048 0.952 37 H 0.090 0.910 38 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.286 -1.389 -10.666 14.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.153 4.153 3 C 0.034 3.966 4 H 0.081 0.919 5 C -0.096 4.096 6 N -0.242 5.242 7 C 0.038 3.962 8 C -0.546 4.546 9 H 0.098 0.902 10 C -0.133 4.133 11 N -0.539 5.539 12 Si 0.700 3.300 13 H -0.202 1.202 14 H -0.212 1.212 15 H -0.193 1.193 16 C -0.065 4.065 17 H 0.102 0.898 18 C -0.194 4.194 19 C -0.203 4.203 20 C -0.005 4.005 21 O -0.303 6.303 22 H 0.070 0.930 23 H 0.078 0.922 24 H 0.068 0.932 25 H 0.085 0.915 26 H 0.095 0.905 27 H 0.109 0.891 28 H 0.051 0.949 29 H 0.011 0.989 30 H 0.040 0.960 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.108 0.892 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.442 -1.223 -10.269 14.696 hybrid contribution 1.566 -0.103 -1.009 1.866 sum -8.875 -1.327 -11.279 14.413 Atomic orbital electron populations 1.21691 0.95542 1.01000 1.02091 1.21512 0.96302 0.94857 1.02633 1.22250 0.94146 0.93250 0.86927 0.91902 1.22670 0.93850 0.90759 1.02329 1.62380 1.15856 1.16355 1.29632 1.20178 0.82585 0.95458 0.98017 1.21036 0.93240 1.48770 0.91531 0.90194 1.24890 0.98427 0.94965 0.95027 1.69888 1.18624 1.50584 1.14838 0.86896 0.82078 0.78697 0.82305 1.20152 1.21154 1.19327 1.22467 0.95662 0.99295 0.89125 0.89823 1.22134 1.01294 1.00621 0.95348 1.21733 1.01213 1.00166 0.97174 1.22613 0.92926 0.83740 1.01231 1.87872 1.76622 1.26345 1.39451 0.92953 0.92213 0.93165 0.91545 0.90477 0.89056 0.94902 0.98945 0.96012 0.92669 0.91922 0.91391 0.92691 0.92996 0.93323 0.89226 0.92861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.81 37.16 0.36 -1.34 16 2 C -0.12 -1.55 5.65 -26.73 -0.15 -1.70 16 3 C 0.09 1.49 2.80 -26.68 -0.07 1.42 16 4 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 5 C 0.03 0.62 4.36 -3.72 -0.02 0.61 16 6 N -0.52 -10.91 4.60 -227.78 -1.05 -11.96 16 7 C 0.16 3.97 2.90 -4.97 -0.01 3.96 16 8 C -0.51 -14.45 9.22 -34.44 -0.32 -14.77 16 9 H 0.08 2.48 7.98 -52.49 -0.42 2.06 16 10 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 11 N -0.90 -27.61 13.96 55.43 0.77 -26.83 16 12 Si 0.87 21.56 27.47 -169.99 -4.67 16.89 16 13 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 14 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 15 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 16 C 0.04 0.76 2.38 -67.60 -0.16 0.60 16 17 H 0.08 1.43 8.02 -51.93 -0.42 1.01 16 18 C -0.15 -2.51 4.66 -26.73 -0.12 -2.63 16 19 C -0.14 -1.87 9.54 37.16 0.35 -1.51 16 20 C 0.07 1.09 6.25 37.21 0.23 1.32 16 21 O -0.38 -6.16 9.37 -35.23 -0.33 -6.49 16 22 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.06 0.73 7.82 -51.93 -0.41 0.32 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 26 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 27 H 0.09 1.92 7.53 -51.93 -0.39 1.53 16 28 H 0.03 0.63 6.50 -51.93 -0.34 0.29 16 29 H -0.01 -0.18 6.24 -51.93 -0.32 -0.50 16 30 H 0.02 0.53 7.29 -51.93 -0.38 0.15 16 31 H 0.26 7.56 8.31 -40.82 -0.34 7.23 16 32 H 0.06 1.13 6.65 -51.93 -0.35 0.78 16 33 H 0.07 1.15 6.22 -51.93 -0.32 0.82 16 34 H 0.05 0.65 6.81 -51.93 -0.35 0.30 16 35 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.09 1.13 6.59 -51.93 -0.34 0.79 16 38 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 290.30 15.07 4.37 4.37 Total: -1.00 -30.16 290.30 -7.49 -37.65 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -6.59 Total: -1.46 kcal Atomic # 6 Polarization: -12.17 SS G_CDS: -0.01 Total: -12.17 kcal Atomic # 7 Polarization: -38.51 SS G_CDS: -0.27 Total: -38.79 kcal Atomic # 8 Polarization: -6.16 SS G_CDS: -0.33 Total: -6.49 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.89 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.16 -7.49 -37.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403927441.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.679 kcal (2) G-P(sol) polarization free energy of solvation -30.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds