Wall clock time and date at job start Sun Mar 29 2020 21:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.47197 * 2 1 4 4 H 1.09004 * 109.54289 * 55.10728 * 3 2 1 5 5 C 1.53092 * 109.51054 * 175.21442 * 3 2 1 6 6 N 1.47006 * 109.26296 * 176.78440 * 5 3 2 7 7 C 1.46902 * 111.00451 * 177.61102 * 6 5 3 8 8 C 1.50701 * 109.46797 * 284.30423 * 7 6 5 9 9 H 1.07995 * 120.00362 * 359.97438 * 8 7 6 10 10 C 1.37877 * 119.99893 * 179.97438 * 8 7 6 11 11 N 1.31507 * 120.00168 * 179.97438 * 10 8 7 12 12 Si 1.86805 * 119.99661 * 359.97438 * 10 8 7 13 13 H 1.48496 * 109.47010 * 90.00604 * 12 10 8 14 14 H 1.48508 * 109.46702 * 209.99700 * 12 10 8 15 15 H 1.48497 * 109.47504 * 329.99682 * 12 10 8 16 16 C 1.47018 * 110.75512 * 301.38762 * 6 5 3 17 17 H 1.08996 * 109.50926 * 178.54574 * 16 6 5 18 18 C 1.53000 * 109.50346 * 298.68130 * 16 6 5 19 19 C 1.53008 * 109.46947 * 185.56607 * 18 16 6 20 20 C 1.53095 * 109.25649 * 58.61309 * 16 6 5 21 21 O 1.43014 * 109.50705 * 295.00179 * 3 2 1 22 22 H 1.08994 * 109.46705 * 300.00098 * 1 2 3 23 23 H 1.09007 * 109.46874 * 59.99900 * 1 2 3 24 24 H 1.08998 * 109.46779 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46814 * 240.00601 * 2 1 3 26 26 H 1.08995 * 109.47309 * 120.00000 * 2 1 3 27 27 H 1.09002 * 109.50922 * 296.72620 * 5 3 2 28 28 H 1.09007 * 109.49993 * 56.85138 * 5 3 2 29 29 H 1.09004 * 109.46955 * 44.29827 * 7 6 5 30 30 H 1.08992 * 109.47586 * 164.29905 * 7 6 5 31 31 H 0.97003 * 120.00390 * 180.02562 * 11 10 8 32 32 H 1.08997 * 109.47198 * 305.56282 * 18 16 6 33 33 H 1.08998 * 109.47534 * 65.57131 * 18 16 6 34 34 H 1.08997 * 109.47190 * 294.10248 * 19 18 16 35 35 H 1.08999 * 109.46774 * 54.10436 * 19 18 16 36 36 H 1.08998 * 109.46793 * 174.10406 * 19 18 16 37 37 H 1.09000 * 109.51270 * 183.22021 * 20 16 6 38 38 H 1.08995 * 109.51062 * 63.08593 * 20 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6076 1.9821 0.8426 5 6 3.5663 1.4452 0.1204 6 7 4.0565 2.8289 0.0423 7 6 5.5149 2.8812 0.2107 8 6 5.8600 2.6840 1.6644 9 1 5.0746 2.5352 2.3905 10 6 7.1786 2.6936 2.0673 11 7 7.4798 2.5220 3.3358 12 14 8.5371 2.9502 0.8111 13 1 8.8248 4.4014 0.6826 14 1 9.7632 2.2402 1.2560 15 1 8.1036 2.4131 -0.5037 16 6 3.6496 3.4551 -1.2241 17 1 4.0009 4.4866 -1.2494 18 6 4.2554 2.6792 -2.3953 19 6 3.9477 3.4093 -3.7043 20 6 2.1226 3.4323 -1.3309 21 8 1.6621 2.0827 -1.2217 22 1 -0.3632 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8934 -0.5137 -0.8901 26 1 1.8934 -0.5138 0.8899 27 1 3.8568 1.0095 1.0764 28 1 3.9964 0.8603 -0.6927 29 1 5.9776 2.0926 -0.3827 30 1 5.8846 3.8509 -0.1222 31 1 8.4074 2.5291 3.6194 32 1 5.3351 2.6078 -2.2643 33 1 3.8263 1.6777 -2.4285 34 1 2.8735 3.3890 -3.8878 35 1 4.2844 4.4434 -3.6313 36 1 4.4660 2.9154 -4.5262 37 1 1.8188 3.8437 -2.2935 38 1 1.6925 4.0297 -0.5271 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000403927441.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:48 Heat of formation + Delta-G solvation = -75.913893 kcal Electronic energy + Delta-G solvation = -16956.835825 eV Core-core repulsion = 14411.974745 eV Total energy + Delta-G solvation = -2544.861080 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.08823 -37.30880 -35.48005 -34.59013 -33.45324 -30.40934 -29.85290 -27.13784 -25.40952 -24.15842 -23.25913 -22.03397 -19.98892 -19.03385 -17.54735 -17.29595 -16.53849 -16.30396 -15.83297 -15.42734 -14.93394 -14.86113 -14.50081 -14.29957 -14.11826 -13.70926 -13.19853 -12.92611 -12.77201 -12.72979 -12.56007 -12.34679 -12.17489 -11.98516 -11.83115 -11.81242 -11.60395 -11.50636 -11.11321 -10.80514 -10.42216 -9.02700 -8.31540 -6.34758 1.30864 1.32182 1.42709 2.30597 2.82551 3.00277 3.09149 3.84182 3.91945 3.95365 4.09339 4.16248 4.29948 4.41178 4.44887 4.55448 4.59155 4.66324 4.70073 4.81870 4.82820 4.87560 4.95020 5.05460 5.08085 5.12365 5.13261 5.24819 5.27310 5.41890 5.46967 5.51615 5.93495 6.22262 6.32465 6.59085 6.71103 7.28747 8.85280 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026069 B = 0.008813 C = 0.007122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.803233 B = 3176.473950 C = 3930.606142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.113 4.113 3 C 0.100 3.900 4 H 0.054 0.946 5 C 0.037 3.963 6 N -0.539 5.539 7 C 0.178 3.822 8 C -0.516 4.516 9 H 0.036 0.964 10 C 0.010 3.990 11 N -0.946 5.946 12 Si 0.945 3.055 13 H -0.263 1.263 14 H -0.280 1.280 15 H -0.255 1.255 16 C 0.039 3.961 17 H 0.087 0.913 18 C -0.149 4.149 19 C -0.138 4.138 20 C 0.074 3.926 21 O -0.382 6.382 22 H 0.052 0.948 23 H 0.057 0.943 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.079 0.921 27 H 0.061 0.939 28 H 0.032 0.968 29 H -0.011 1.011 30 H 0.025 0.975 31 H 0.267 0.733 32 H 0.040 0.960 33 H 0.058 0.942 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.124 0.876 38 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.902 -1.031 -13.253 17.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.151 4.151 3 C 0.042 3.958 4 H 0.072 0.928 5 C -0.092 4.092 6 N -0.262 5.262 7 C 0.051 3.949 8 C -0.555 4.555 9 H 0.054 0.946 10 C -0.188 4.188 11 N -0.587 5.587 12 Si 0.768 3.232 13 H -0.188 1.188 14 H -0.205 1.205 15 H -0.179 1.179 16 C -0.069 4.069 17 H 0.105 0.895 18 C -0.188 4.188 19 C -0.196 4.196 20 C -0.003 4.003 21 O -0.301 6.301 22 H 0.071 0.929 23 H 0.076 0.924 24 H 0.088 0.912 25 H 0.088 0.912 26 H 0.097 0.903 27 H 0.079 0.921 28 H 0.050 0.950 29 H 0.006 0.994 30 H 0.043 0.957 31 H 0.076 0.924 32 H 0.059 0.941 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.142 0.858 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.086 -0.863 -12.873 17.010 hybrid contribution 1.693 -0.213 -0.131 1.711 sum -9.393 -1.076 -13.004 16.078 Atomic orbital electron populations 1.21642 0.93742 1.02296 1.02011 1.21527 0.97797 0.92829 1.02932 1.22180 0.91627 0.95024 0.86939 0.92809 1.22625 0.96219 0.89790 1.00546 1.62256 1.13694 1.17566 1.32721 1.19866 0.85023 0.95111 0.94860 1.21261 0.92505 1.48581 0.93128 0.94610 1.25819 1.01259 0.94523 0.97184 1.70042 1.19503 1.51956 1.17211 0.85749 0.78364 0.79286 0.79762 1.18808 1.20514 1.17871 1.22637 0.97448 0.99154 0.87701 0.89484 1.22043 0.99569 1.00458 0.96727 1.21688 1.02415 1.00219 0.95252 1.22753 0.91035 0.83414 1.03103 1.87885 1.76328 1.26835 1.39007 0.92854 0.92430 0.91221 0.91221 0.90266 0.92097 0.95022 0.99371 0.95705 0.92368 0.94139 0.92289 0.91146 0.92091 0.92301 0.85797 0.92954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 9.81 71.98 0.71 -2.27 16 2 C -0.11 -2.92 5.65 30.60 0.17 -2.75 16 3 C 0.10 3.20 2.80 30.62 0.09 3.29 16 4 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 5 C 0.04 1.44 4.36 86.31 0.38 1.81 16 6 N -0.54 -22.85 4.60 -874.55 -4.02 -26.88 16 7 C 0.18 8.74 2.90 85.56 0.25 8.99 16 8 C -0.52 -30.47 9.22 25.60 0.24 -30.24 16 9 H 0.04 2.36 7.98 -2.91 -0.02 2.34 16 10 C 0.01 0.56 5.47 84.66 0.46 1.03 16 11 N -0.95 -59.72 13.96 21.45 0.30 -59.42 16 12 Si 0.95 44.57 27.47 68.60 1.88 46.46 16 13 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 14 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 15 H -0.25 -11.36 6.54 99.48 0.65 -10.71 16 16 C 0.04 1.30 2.38 44.92 0.11 1.41 16 17 H 0.09 2.81 8.02 -2.39 -0.02 2.79 16 18 C -0.15 -4.54 4.66 30.60 0.14 -4.40 16 19 C -0.14 -3.08 9.54 71.98 0.69 -2.39 16 20 C 0.07 2.04 6.25 72.01 0.45 2.49 16 21 O -0.38 -11.48 9.37 -148.98 -1.40 -12.87 16 22 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 23 H 0.06 1.26 7.82 -2.38 -0.02 1.24 16 24 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 26 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.06 2.71 7.53 -2.39 -0.02 2.69 16 28 H 0.03 1.23 6.50 -2.38 -0.02 1.22 16 29 H -0.01 -0.56 6.24 -2.38 -0.01 -0.58 16 30 H 0.02 1.20 7.29 -2.39 -0.02 1.18 16 31 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 32 H 0.04 1.40 6.65 -2.39 -0.02 1.38 16 33 H 0.06 1.89 6.22 -2.39 -0.01 1.88 16 34 H 0.07 1.36 6.81 -2.39 -0.02 1.35 16 35 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.12 2.63 6.59 -2.39 -0.02 2.61 16 38 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -66.40 290.30 1.39 -65.01 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: 0.95 Total: 10.73 kcal Atomic # 6 Polarization: -26.70 SS G_CDS: 3.67 Total: -23.03 kcal Atomic # 7 Polarization: -82.57 SS G_CDS: -3.72 Total: -86.29 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: -1.40 Total: -12.87 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 1.88 Total: 46.46 kcal Total: -66.40 1.39 -65.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403927441.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.906 kcal (2) G-P(sol) polarization free energy of solvation -66.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds