Wall clock time and date at job start Sun Mar 29 2020 22:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47101 * 2 1 4 4 O 1.42900 * 109.47477 * 119.99696 * 2 1 3 5 5 C 1.42895 * 114.00521 * 149.99885 * 4 2 1 6 6 H 1.09009 * 109.49578 * 29.92439 * 5 4 2 7 7 C 1.53118 * 109.53684 * 269.82933 * 5 4 2 8 8 C 1.53123 * 109.15882 * 182.38116 * 7 5 4 9 9 C 1.53039 * 109.27852 * 57.65154 * 8 7 5 10 10 N 1.46849 * 109.52554 * 300.82186 * 9 8 7 11 11 C 1.46895 * 110.99950 * 185.83836 * 10 9 8 12 12 C 1.50700 * 109.46912 * 300.35932 * 11 10 9 13 13 H 1.07993 * 120.00672 * 4.88158 * 12 11 10 14 14 C 1.37876 * 119.99668 * 184.88373 * 12 11 10 15 15 N 1.31520 * 120.00109 * 179.97438 * 14 12 11 16 16 Si 1.86807 * 120.00115 * 359.97438 * 14 12 11 17 17 H 1.48497 * 109.46996 * 89.99949 * 16 14 12 18 18 H 1.48503 * 109.46812 * 209.99832 * 16 14 12 19 19 H 1.48496 * 109.46848 * 329.99927 * 16 14 12 20 20 C 1.46844 * 111.19615 * 61.73877 * 10 9 8 21 21 H 1.08996 * 109.47280 * 299.99610 * 1 2 3 22 22 H 1.09001 * 109.47012 * 60.00189 * 1 2 3 23 23 H 1.09006 * 109.46701 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47704 * 240.00062 * 2 1 3 25 25 H 1.08990 * 109.47617 * 179.97438 * 3 2 1 26 26 H 1.08996 * 109.47093 * 300.00277 * 3 2 1 27 27 H 1.09009 * 109.47068 * 59.99574 * 3 2 1 28 28 H 1.08991 * 109.52550 * 302.28320 * 7 5 4 29 29 H 1.09000 * 109.52062 * 62.41519 * 7 5 4 30 30 H 1.09001 * 109.50196 * 177.59532 * 8 7 5 31 31 H 1.09008 * 109.50314 * 297.71134 * 8 7 5 32 32 H 1.08997 * 109.46063 * 180.80035 * 9 8 7 33 33 H 1.08997 * 109.45753 * 60.83727 * 9 8 7 34 34 H 1.09007 * 109.47002 * 60.35597 * 11 10 9 35 35 H 1.08996 * 109.47093 * 180.35754 * 11 10 9 36 36 H 0.97001 * 120.00131 * 180.02562 * 15 14 12 37 37 H 1.08997 * 109.46222 * 58.27651 * 20 10 9 38 38 H 1.09001 * 109.45878 * 178.25287 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 3.2660 -1.3244 0.9887 6 1 3.8529 -0.7840 0.2459 7 6 3.0370 -2.7615 0.5125 8 6 4.3887 -3.4690 0.3817 9 6 5.1121 -3.4297 1.7298 10 7 5.3078 -2.0337 2.1412 11 6 6.1206 -1.9538 3.3622 12 6 5.4309 -2.7008 4.4745 13 1 4.5242 -3.2521 4.2738 14 6 5.9574 -2.6803 5.7487 15 7 5.3552 -3.3318 6.7196 16 14 7.5260 -1.7272 6.0959 17 1 7.1839 -0.3349 6.4827 18 1 8.2673 -2.3810 7.2043 19 1 8.3737 -1.7082 4.8769 20 6 4.0220 -1.3473 2.3191 21 1 -0.3633 0.5137 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5138 -0.8899 25 1 3.1299 1.4426 0.0005 26 1 1.6766 1.9563 -0.8899 27 1 1.6766 1.9564 0.8900 28 1 2.4175 -3.2908 1.2364 29 1 2.5362 -2.7490 -0.4555 30 1 4.2296 -4.5055 0.0841 31 1 4.9933 -2.9624 -0.3706 32 1 6.0810 -3.9202 1.6364 33 1 4.5133 -3.9484 2.4784 34 1 7.0985 -2.3988 3.1775 35 1 6.2448 -0.9094 3.6483 36 1 5.7254 -3.3171 7.6161 37 1 3.4283 -1.8758 3.0650 38 1 4.1992 -0.3251 2.6536 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404480330.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:17 Heat of formation + Delta-G solvation = -59.796119 kcal Electronic energy + Delta-G solvation = -16594.260850 eV Core-core repulsion = 14050.098689 eV Total energy + Delta-G solvation = -2544.162161 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.08288 -37.14296 -33.56998 -32.41607 -31.67390 -29.08424 -27.30773 -27.20620 -23.78628 -22.28715 -21.41578 -20.70778 -19.13605 -16.82366 -16.68379 -15.43094 -14.87787 -14.44779 -14.19818 -13.84148 -13.60228 -13.20565 -13.12489 -12.58594 -12.28544 -12.19804 -12.14248 -11.95761 -11.61821 -11.29131 -11.04597 -10.87110 -10.52398 -10.47120 -10.27848 -10.16311 -10.13788 -9.82215 -9.50392 -9.07745 -8.58235 -7.21832 -6.09201 -4.09239 3.28702 3.36129 3.39960 3.79799 4.40634 4.90372 5.02465 5.06347 5.21853 5.23244 5.25540 5.33965 5.43402 5.56108 5.64873 5.69981 5.79743 5.85692 5.97820 6.03312 6.16297 6.21395 6.23670 6.28365 6.42487 6.46544 6.64374 6.76767 6.86733 6.95119 7.08177 7.56255 7.58239 8.04030 8.11985 8.45679 8.93512 9.53373 11.03765 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.032770 B = 0.006746 C = 0.006303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.232054 B = 4149.514278 C = 4441.520364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.081 3.919 3 C -0.175 4.175 4 O -0.377 6.377 5 C 0.094 3.906 6 H 0.061 0.939 7 C -0.138 4.138 8 C -0.114 4.114 9 C 0.058 3.942 10 N -0.533 5.533 11 C 0.156 3.844 12 C -0.552 4.552 13 H 0.076 0.924 14 C 0.072 3.928 15 N -0.899 5.899 16 Si 0.879 3.121 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.264 1.264 20 C 0.068 3.932 21 H 0.063 0.937 22 H 0.064 0.936 23 H 0.059 0.941 24 H 0.056 0.944 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.046 0.954 34 H 0.030 0.970 35 H 0.025 0.975 36 H 0.263 0.737 37 H 0.052 0.948 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.367 5.187 -14.371 16.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.023 3.977 3 C -0.233 4.233 4 O -0.295 6.295 5 C 0.036 3.964 6 H 0.079 0.921 7 C -0.176 4.176 8 C -0.152 4.152 9 C -0.070 4.070 10 N -0.257 5.257 11 C 0.030 3.970 12 C -0.591 4.591 13 H 0.094 0.906 14 C -0.130 4.130 15 N -0.537 5.537 16 Si 0.706 3.294 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.189 1.189 20 C -0.060 4.060 21 H 0.082 0.918 22 H 0.083 0.917 23 H 0.079 0.921 24 H 0.074 0.926 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.065 0.935 34 H 0.048 0.952 35 H 0.043 0.957 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.204 5.386 -14.379 16.213 hybrid contribution 0.471 0.034 0.851 0.973 sum -4.732 5.421 -13.528 15.323 Atomic orbital electron populations 1.21852 0.94088 1.02502 1.02136 1.22030 0.94635 0.92348 0.88681 1.22315 1.01813 0.96997 1.02128 1.87951 1.37099 1.69582 1.34900 1.22169 0.83884 0.91774 0.98562 0.92133 1.22057 0.98018 0.96811 1.00701 1.21577 0.95524 0.99509 0.98566 1.21938 0.99790 0.90677 0.94627 1.62304 1.14950 1.13677 1.34812 1.20162 0.93481 0.96734 0.86652 1.21704 1.11931 1.32298 0.93143 0.90645 1.24975 0.97003 0.94947 0.96121 1.69933 1.39938 1.42389 1.01421 0.86795 0.83955 0.80334 0.78316 1.20185 1.21302 1.18854 1.21792 0.90565 0.99678 0.94010 0.91837 0.91718 0.92142 0.92609 0.92310 0.92154 0.91826 0.91447 0.92790 0.91982 0.91914 0.91486 0.93542 0.95189 0.95651 0.92688 0.93003 0.91333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.56 37.16 0.36 -1.22 16 2 C 0.08 1.02 3.13 -26.73 -0.08 0.93 16 3 C -0.17 -1.98 9.52 37.16 0.35 -1.63 16 4 O -0.38 -6.18 9.64 -35.23 -0.34 -6.52 16 5 C 0.09 1.57 2.56 -26.65 -0.07 1.51 16 6 H 0.06 0.96 7.63 -51.92 -0.40 0.57 16 7 C -0.14 -2.14 5.62 -26.61 -0.15 -2.29 16 8 C -0.11 -1.76 6.09 -26.65 -0.16 -1.92 16 9 C 0.06 1.13 5.04 -3.83 -0.02 1.11 16 10 N -0.53 -11.30 4.86 -236.12 -1.15 -12.44 16 11 C 0.16 3.80 4.19 -4.98 -0.02 3.78 16 12 C -0.55 -15.54 8.28 -34.44 -0.29 -15.82 16 13 H 0.08 2.31 6.10 -52.49 -0.32 1.99 16 14 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 15 N -0.90 -27.61 13.96 55.43 0.77 -26.84 16 16 Si 0.88 21.56 27.38 -169.99 -4.65 16.91 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 19 H -0.26 -6.22 6.68 56.52 0.38 -5.84 16 20 C 0.07 1.39 4.77 -3.84 -0.02 1.37 16 21 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 22 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.06 0.65 7.67 -51.93 -0.40 0.25 16 25 H 0.06 0.70 7.97 -51.93 -0.41 0.29 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.75 8.14 -51.92 -0.42 0.32 16 28 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.05 0.72 8.01 -51.93 -0.42 0.31 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.06 0.92 8.14 -51.92 -0.42 0.50 16 32 H 0.07 1.28 8.12 -51.93 -0.42 0.86 16 33 H 0.05 1.03 6.57 -51.93 -0.34 0.68 16 34 H 0.03 0.73 7.54 -51.92 -0.39 0.34 16 35 H 0.03 0.62 7.25 -51.93 -0.38 0.24 16 36 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 37 H 0.05 1.21 7.04 -51.93 -0.37 0.85 16 38 H 0.07 1.42 8.08 -51.93 -0.42 1.00 16 LS Contribution 296.39 15.07 4.47 4.47 Total: -1.00 -30.11 296.39 -7.90 -38.01 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -6.80 Total: -1.40 kcal Atomic # 6 Polarization: -11.99 SS G_CDS: -0.20 Total: -12.18 kcal Atomic # 7 Polarization: -38.91 SS G_CDS: -0.37 Total: -39.28 kcal Atomic # 8 Polarization: -6.18 SS G_CDS: -0.34 Total: -6.52 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.65 Total: 16.91 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -30.11 -7.90 -38.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404480330.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.786 kcal (2) G-P(sol) polarization free energy of solvation -30.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds