Wall clock time and date at job start Sun Mar 29 2020 22:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47101 * 2 1 4 4 O 1.42900 * 109.47477 * 119.99696 * 2 1 3 5 5 C 1.42895 * 114.00521 * 149.99885 * 4 2 1 6 6 H 1.09009 * 109.49578 * 29.92439 * 5 4 2 7 7 C 1.53118 * 109.53684 * 269.82933 * 5 4 2 8 8 C 1.53123 * 109.15882 * 182.38116 * 7 5 4 9 9 C 1.53039 * 109.27852 * 57.65154 * 8 7 5 10 10 N 1.46849 * 109.52554 * 300.82186 * 9 8 7 11 11 C 1.46895 * 110.99950 * 185.83836 * 10 9 8 12 12 C 1.50700 * 109.46912 * 300.35932 * 11 10 9 13 13 H 1.07993 * 120.00672 * 4.88158 * 12 11 10 14 14 C 1.37876 * 119.99668 * 184.88373 * 12 11 10 15 15 N 1.31520 * 120.00109 * 179.97438 * 14 12 11 16 16 Si 1.86807 * 120.00115 * 359.97438 * 14 12 11 17 17 H 1.48497 * 109.46996 * 89.99949 * 16 14 12 18 18 H 1.48503 * 109.46812 * 209.99832 * 16 14 12 19 19 H 1.48496 * 109.46848 * 329.99927 * 16 14 12 20 20 C 1.46844 * 111.19615 * 61.73877 * 10 9 8 21 21 H 1.08996 * 109.47280 * 299.99610 * 1 2 3 22 22 H 1.09001 * 109.47012 * 60.00189 * 1 2 3 23 23 H 1.09006 * 109.46701 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47704 * 240.00062 * 2 1 3 25 25 H 1.08990 * 109.47617 * 179.97438 * 3 2 1 26 26 H 1.08996 * 109.47093 * 300.00277 * 3 2 1 27 27 H 1.09009 * 109.47068 * 59.99574 * 3 2 1 28 28 H 1.08991 * 109.52550 * 302.28320 * 7 5 4 29 29 H 1.09000 * 109.52062 * 62.41519 * 7 5 4 30 30 H 1.09001 * 109.50196 * 177.59532 * 8 7 5 31 31 H 1.09008 * 109.50314 * 297.71134 * 8 7 5 32 32 H 1.08997 * 109.46063 * 180.80035 * 9 8 7 33 33 H 1.08997 * 109.45753 * 60.83727 * 9 8 7 34 34 H 1.09007 * 109.47002 * 60.35597 * 11 10 9 35 35 H 1.08996 * 109.47093 * 180.35754 * 11 10 9 36 36 H 0.97001 * 120.00131 * 180.02562 * 15 14 12 37 37 H 1.08997 * 109.46222 * 58.27651 * 20 10 9 38 38 H 1.09001 * 109.45878 * 178.25287 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 3.2660 -1.3244 0.9887 6 1 3.8529 -0.7840 0.2459 7 6 3.0370 -2.7615 0.5125 8 6 4.3887 -3.4690 0.3817 9 6 5.1121 -3.4297 1.7298 10 7 5.3078 -2.0337 2.1412 11 6 6.1206 -1.9538 3.3622 12 6 5.4309 -2.7008 4.4745 13 1 4.5242 -3.2521 4.2738 14 6 5.9574 -2.6803 5.7487 15 7 5.3552 -3.3318 6.7196 16 14 7.5260 -1.7272 6.0959 17 1 7.1839 -0.3349 6.4827 18 1 8.2673 -2.3810 7.2043 19 1 8.3737 -1.7082 4.8769 20 6 4.0220 -1.3473 2.3191 21 1 -0.3633 0.5137 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5138 -0.8899 25 1 3.1299 1.4426 0.0005 26 1 1.6766 1.9563 -0.8899 27 1 1.6766 1.9564 0.8900 28 1 2.4175 -3.2908 1.2364 29 1 2.5362 -2.7490 -0.4555 30 1 4.2296 -4.5055 0.0841 31 1 4.9933 -2.9624 -0.3706 32 1 6.0810 -3.9202 1.6364 33 1 4.5133 -3.9484 2.4784 34 1 7.0985 -2.3988 3.1775 35 1 6.2448 -0.9094 3.6483 36 1 5.7254 -3.3171 7.6161 37 1 3.4283 -1.8758 3.0650 38 1 4.1992 -0.3251 2.6536 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404480330.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:16 Heat of formation + Delta-G solvation = -80.511723 kcal Electronic energy + Delta-G solvation = -16595.159146 eV Core-core repulsion = 14050.098689 eV Total energy + Delta-G solvation = -2545.060457 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.47001 -38.54620 -35.29251 -33.94237 -33.22610 -30.56216 -29.23824 -28.06612 -25.58200 -23.72868 -22.93649 -21.93166 -20.76523 -18.89910 -17.93960 -16.90323 -16.38320 -15.98112 -15.72286 -15.32329 -15.15748 -14.59287 -14.46042 -14.31692 -13.76035 -13.45740 -13.30799 -13.05793 -12.99214 -12.92546 -12.56927 -12.27191 -12.12203 -12.02063 -11.86166 -11.71809 -11.62568 -11.44460 -11.25138 -10.80994 -10.33228 -9.08038 -8.33418 -6.39470 1.34915 1.35913 1.48598 2.32566 2.57629 3.01640 3.46695 3.84121 3.92448 4.04651 4.09732 4.20139 4.29610 4.34480 4.41605 4.61751 4.71228 4.77851 4.81890 4.91364 4.92824 4.97046 4.99206 5.00821 5.04417 5.08907 5.15065 5.21543 5.32591 5.36061 5.39262 5.51352 6.05393 6.28687 6.30314 6.50868 6.67014 7.27446 8.83172 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.032770 B = 0.006746 C = 0.006303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.232054 B = 4149.514278 C = 4441.520364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.071 3.929 3 C -0.173 4.173 4 O -0.402 6.402 5 C 0.105 3.895 6 H 0.079 0.921 7 C -0.135 4.135 8 C -0.103 4.103 9 C 0.056 3.944 10 N -0.523 5.523 11 C 0.161 3.839 12 C -0.554 4.554 13 H 0.031 0.969 14 C 0.009 3.991 15 N -0.948 5.948 16 Si 0.952 3.048 17 H -0.268 1.268 18 H -0.282 1.282 19 H -0.242 1.242 20 C 0.071 3.929 21 H 0.053 0.947 22 H 0.093 0.907 23 H 0.056 0.944 24 H 0.072 0.928 25 H 0.050 0.950 26 H 0.087 0.913 27 H 0.052 0.948 28 H 0.044 0.956 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.071 0.929 33 H 0.007 0.993 34 H 0.037 0.963 35 H 0.029 0.971 36 H 0.266 0.734 37 H 0.007 0.993 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.492 6.441 -17.014 18.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.013 3.987 3 C -0.230 4.230 4 O -0.322 6.322 5 C 0.047 3.953 6 H 0.097 0.903 7 C -0.173 4.173 8 C -0.140 4.140 9 C -0.073 4.073 10 N -0.247 5.247 11 C 0.033 3.967 12 C -0.593 4.593 13 H 0.049 0.951 14 C -0.189 4.189 15 N -0.589 5.589 16 Si 0.775 3.225 17 H -0.193 1.193 18 H -0.208 1.208 19 H -0.166 1.166 20 C -0.058 4.058 21 H 0.072 0.928 22 H 0.112 0.888 23 H 0.075 0.925 24 H 0.090 0.910 25 H 0.069 0.931 26 H 0.106 0.894 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.106 0.894 30 H 0.104 0.896 31 H 0.102 0.898 32 H 0.089 0.911 33 H 0.025 0.975 34 H 0.055 0.945 35 H 0.048 0.952 36 H 0.075 0.925 37 H 0.025 0.975 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.342 6.643 -17.055 18.811 hybrid contribution 0.078 -0.382 1.663 1.709 sum -4.264 6.261 -15.392 17.155 Atomic orbital electron populations 1.21871 0.92765 1.02599 1.03088 1.22372 0.95733 0.92744 0.87801 1.22303 1.01309 0.96399 1.02988 1.87935 1.36683 1.70102 1.37465 1.21960 0.84170 0.93074 0.96089 0.90317 1.22042 0.98025 0.95508 1.01681 1.21535 0.95067 1.01403 0.96041 1.22033 0.99959 0.89153 0.96128 1.62360 1.14972 1.14751 1.32593 1.20061 0.93846 0.96131 0.86632 1.21914 1.10649 1.31911 0.94785 0.95090 1.25979 1.01067 0.96086 0.95738 1.70091 1.42226 1.44462 1.02084 0.85635 0.79223 0.78694 0.78942 1.19304 1.20812 1.16560 1.21765 0.90080 0.98263 0.95673 0.92833 0.88810 0.92502 0.90959 0.93055 0.89378 0.92908 0.93731 0.89401 0.89611 0.89751 0.91068 0.97470 0.94469 0.95244 0.92469 0.97505 0.92114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 9.56 71.98 0.69 -2.10 16 2 C 0.07 1.61 3.13 30.59 0.10 1.70 16 3 C -0.17 -3.51 9.52 71.98 0.69 -2.82 16 4 O -0.40 -12.95 9.64 -148.98 -1.44 -14.39 16 5 C 0.11 3.41 2.56 30.64 0.08 3.49 16 6 H 0.08 2.29 7.63 -2.38 -0.02 2.27 16 7 C -0.13 -3.95 5.62 30.67 0.17 -3.78 16 8 C -0.10 -2.94 6.09 30.65 0.19 -2.76 16 9 C 0.06 2.17 5.04 86.33 0.43 2.61 16 10 N -0.52 -22.18 4.86 -900.95 -4.38 -26.56 16 11 C 0.16 7.84 4.19 85.56 0.36 8.20 16 12 C -0.55 -32.42 8.28 25.60 0.21 -32.21 16 13 H 0.03 2.04 6.10 -2.91 -0.02 2.03 16 14 C 0.01 0.54 5.47 84.65 0.46 1.01 16 15 N -0.95 -60.43 13.96 21.45 0.30 -60.13 16 16 Si 0.95 44.52 27.38 68.60 1.88 46.40 16 17 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 18 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 19 H -0.24 -10.42 6.68 99.48 0.66 -9.75 16 20 C 0.07 2.98 4.77 86.32 0.41 3.39 16 21 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 22 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 23 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 24 H 0.07 1.42 7.67 -2.39 -0.02 1.40 16 25 H 0.05 1.11 7.97 -2.39 -0.02 1.09 16 26 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 28 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.09 2.03 8.01 -2.39 -0.02 2.01 16 30 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.08 2.13 8.14 -2.38 -0.02 2.11 16 32 H 0.07 2.68 8.12 -2.39 -0.02 2.67 16 33 H 0.01 0.33 6.57 -2.39 -0.02 0.31 16 34 H 0.04 1.77 7.54 -2.38 -0.02 1.75 16 35 H 0.03 1.41 7.25 -2.39 -0.02 1.40 16 36 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 37 H 0.01 0.33 7.04 -2.39 -0.02 0.32 16 38 H 0.06 2.57 8.08 -2.39 -0.02 2.55 16 Total: -1.00 -68.14 296.39 1.11 -67.03 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: 0.95 Total: 10.93 kcal Atomic # 6 Polarization: -27.07 SS G_CDS: 3.79 Total: -23.28 kcal Atomic # 7 Polarization: -82.61 SS G_CDS: -4.08 Total: -86.69 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: -1.44 Total: -14.39 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 1.88 Total: 46.40 kcal Total: -68.14 1.11 -67.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404480330.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.478 kcal (2) G-P(sol) polarization free energy of solvation -68.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds