Wall clock time and date at job start Sun Mar 29 2020 22:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46973 * 2 1 4 4 O 1.42897 * 109.46911 * 119.99847 * 2 1 3 5 5 C 1.42908 * 113.99981 * 89.99846 * 4 2 1 6 6 H 1.08997 * 109.53330 * 329.90344 * 5 4 2 7 7 C 1.53120 * 109.50031 * 89.99899 * 5 4 2 8 8 C 1.53123 * 109.21163 * 177.62848 * 7 5 4 9 9 C 1.53037 * 109.27398 * 302.31409 * 8 7 5 10 10 N 1.46848 * 109.52381 * 59.18254 * 9 8 7 11 11 C 1.46900 * 110.99918 * 174.15634 * 10 9 8 12 12 C 1.50707 * 109.47196 * 66.04143 * 11 10 9 13 13 H 1.08000 * 120.00022 * 0.02562 * 12 11 10 14 14 C 1.37877 * 120.00218 * 179.97438 * 12 11 10 15 15 N 1.31511 * 119.99870 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 119.99986 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47141 * 60.00741 * 16 14 12 18 18 H 1.48501 * 109.47014 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47625 * 300.00711 * 16 14 12 20 20 C 1.46845 * 111.19518 * 298.25146 * 10 9 8 21 21 H 1.09003 * 109.47159 * 299.99976 * 1 2 3 22 22 H 1.09002 * 109.47200 * 59.99920 * 1 2 3 23 23 H 1.09004 * 109.47309 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47023 * 239.99536 * 2 1 3 25 25 H 1.09002 * 109.46806 * 180.02562 * 3 2 1 26 26 H 1.08998 * 109.47043 * 299.99580 * 3 2 1 27 27 H 1.09003 * 109.47158 * 60.00024 * 3 2 1 28 28 H 1.09002 * 109.52427 * 57.69122 * 7 5 4 29 29 H 1.08995 * 109.52208 * 297.56441 * 7 5 4 30 30 H 1.08996 * 109.50077 * 62.25431 * 8 7 5 31 31 H 1.08993 * 109.50100 * 182.33643 * 8 7 5 32 32 H 1.09006 * 109.45986 * 179.19524 * 9 8 7 33 33 H 1.08996 * 109.46288 * 299.15727 * 9 8 7 34 34 H 1.08996 * 109.47225 * 186.04271 * 11 10 9 35 35 H 1.09007 * 109.47465 * 306.04862 * 11 10 9 36 36 H 0.97002 * 120.00446 * 179.97438 * 15 14 12 37 37 H 1.09003 * 109.45905 * 181.76430 * 20 10 9 38 38 H 1.09002 * 109.46166 * 301.73872 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2000 -2.0783 0.9887 6 1 1.4931 -2.4526 0.2483 7 6 3.6301 -2.3401 0.5083 8 6 3.8488 -3.8499 0.3765 9 6 3.5765 -4.5195 1.7254 10 7 2.1960 -4.2413 2.1416 11 6 1.8553 -4.9818 3.3637 12 6 2.6863 -4.4674 4.5109 13 1 3.3962 -3.6699 4.3485 14 6 2.5395 -5.0143 5.7681 15 7 1.6746 -5.9850 5.9660 16 14 3.5700 -4.3772 7.1898 17 1 3.2940 -2.9322 7.3928 18 1 3.2254 -5.1257 8.4253 19 1 5.0101 -4.5675 6.8817 20 6 1.9756 -2.8005 2.3206 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8933 -0.5139 -0.8899 25 1 3.1300 1.4425 -0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6766 1.9563 0.8900 28 1 4.3374 -1.9312 1.2298 29 1 3.7819 -1.8642 -0.4604 30 1 3.1678 -4.2521 -0.3735 31 1 4.8781 -4.0435 0.0747 32 1 3.7175 -5.5963 1.6314 33 1 4.2671 -4.1268 2.4717 34 1 0.7981 -4.8428 3.5899 35 1 2.0587 -6.0423 3.2147 36 1 1.5716 -6.3701 6.8503 37 1 0.9537 -2.6288 2.6589 38 1 2.6737 -2.4159 3.0640 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404480331.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:18 Heat of formation + Delta-G solvation = -63.583896 kcal Electronic energy + Delta-G solvation = -16581.714363 eV Core-core repulsion = 14037.387951 eV Total energy + Delta-G solvation = -2544.326411 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.03592 -37.07245 -33.55786 -32.43099 -31.55000 -29.00780 -27.19967 -26.71414 -23.94076 -22.23531 -21.54220 -20.76044 -19.15889 -16.69245 -16.35655 -15.40891 -14.81480 -14.53108 -14.22995 -13.81618 -13.47288 -13.21235 -13.04207 -12.58111 -12.25191 -12.14846 -12.07147 -11.71643 -11.56602 -11.11108 -10.99260 -10.83181 -10.56461 -10.48675 -10.34316 -10.10679 -9.98563 -9.85621 -9.61079 -9.03216 -8.41117 -7.17769 -6.00822 -4.09864 3.30914 3.35358 3.38510 3.82639 4.42823 4.92563 5.05264 5.12715 5.23366 5.25888 5.29925 5.38576 5.45181 5.57145 5.68180 5.72204 5.80705 5.87189 6.00634 6.06157 6.16924 6.23069 6.25960 6.31830 6.42558 6.53015 6.69619 6.78580 6.88212 7.28185 7.52636 7.62405 7.91406 8.06107 8.29884 8.32229 8.99842 9.56936 11.04309 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.029970 B = 0.006791 C = 0.006334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.047151 B = 4122.347553 C = 4419.215432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.081 3.919 3 C -0.148 4.148 4 O -0.378 6.378 5 C 0.092 3.908 6 H 0.061 0.939 7 C -0.137 4.137 8 C -0.114 4.114 9 C 0.060 3.940 10 N -0.539 5.539 11 C 0.189 3.811 12 C -0.550 4.550 13 H 0.057 0.943 14 C 0.065 3.935 15 N -0.892 5.892 16 Si 0.889 3.111 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.277 1.277 20 C 0.071 3.929 21 H 0.063 0.937 22 H 0.059 0.941 23 H 0.059 0.941 24 H 0.056 0.944 25 H 0.059 0.941 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.038 0.962 34 H 0.032 0.968 35 H 0.032 0.968 36 H 0.263 0.737 37 H 0.069 0.931 38 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.076 9.556 -12.429 15.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.023 3.977 3 C -0.205 4.205 4 O -0.296 6.296 5 C 0.034 3.966 6 H 0.079 0.921 7 C -0.175 4.175 8 C -0.152 4.152 9 C -0.069 4.069 10 N -0.265 5.265 11 C 0.064 3.936 12 C -0.589 4.589 13 H 0.075 0.925 14 C -0.137 4.137 15 N -0.530 5.530 16 Si 0.717 3.283 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.203 1.203 20 C -0.057 4.057 21 H 0.082 0.918 22 H 0.078 0.922 23 H 0.078 0.922 24 H 0.074 0.926 25 H 0.078 0.922 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.056 0.944 34 H 0.050 0.950 35 H 0.051 0.949 36 H 0.072 0.928 37 H 0.087 0.913 38 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 0.714 9.365 -12.485 15.624 hybrid contribution 1.038 0.445 1.354 1.763 sum 1.752 9.810 -11.131 14.940 Atomic orbital electron populations 1.22316 0.96297 1.02551 1.02096 1.22025 0.93447 0.93519 0.88702 1.21850 1.01622 0.94952 1.02124 1.87940 1.86111 1.20666 1.34919 1.22236 0.95265 0.80209 0.98860 0.92093 1.22053 0.97956 0.96944 1.00562 1.21580 1.00519 0.94387 0.98738 1.21906 0.91007 0.99643 0.94338 1.62374 1.21667 1.06229 1.36208 1.19741 0.96587 0.93513 0.83777 1.21732 1.22788 1.19803 0.94613 0.92493 1.24950 0.95238 0.94805 0.98729 1.69931 1.34951 1.25307 1.22826 0.86706 0.80756 0.79093 0.81788 1.20200 1.21182 1.20289 1.21783 1.01726 0.88749 0.93464 0.91832 0.92179 0.92232 0.92623 0.92210 0.91720 0.91871 0.91657 0.92874 0.91840 0.92150 0.91543 0.94350 0.94992 0.94950 0.92760 0.91252 0.93534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.03 9.52 37.16 0.35 -1.67 16 2 C 0.08 1.03 3.13 -26.73 -0.08 0.94 16 3 C -0.15 -1.57 9.56 37.16 0.36 -1.22 16 4 O -0.38 -6.23 9.64 -35.23 -0.34 -6.57 16 5 C 0.09 1.57 2.57 -26.58 -0.07 1.50 16 6 H 0.06 1.00 7.63 -51.93 -0.40 0.60 16 7 C -0.14 -2.13 5.61 -26.61 -0.15 -2.28 16 8 C -0.11 -1.78 6.09 -26.65 -0.16 -1.95 16 9 C 0.06 1.17 5.13 -3.83 -0.02 1.16 16 10 N -0.54 -11.83 4.86 -236.02 -1.15 -12.98 16 11 C 0.19 4.95 5.13 -4.97 -0.03 4.92 16 12 C -0.55 -15.37 7.74 -34.44 -0.27 -15.63 16 13 H 0.06 1.59 5.84 -52.49 -0.31 1.28 16 14 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 15 N -0.89 -26.46 13.29 55.43 0.74 -25.72 16 16 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 C 0.07 1.49 4.67 -3.77 -0.02 1.47 16 21 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 22 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 23 H 0.06 0.73 7.97 -51.93 -0.41 0.32 16 24 H 0.06 0.66 7.65 -51.93 -0.40 0.26 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 29 H 0.05 0.71 7.99 -51.93 -0.42 0.30 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.07 1.30 8.06 -51.93 -0.42 0.88 16 33 H 0.04 0.82 7.03 -51.93 -0.37 0.46 16 34 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.03 0.90 8.06 -51.92 -0.42 0.48 16 36 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 37 H 0.07 1.50 8.12 -51.93 -0.42 1.07 16 38 H 0.05 1.07 6.57 -51.93 -0.34 0.73 16 LS Contribution 299.79 15.07 4.52 4.52 Total: -1.00 -29.31 299.79 -8.27 -37.58 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: -6.83 Total: -2.57 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: -0.18 Total: -11.00 kcal Atomic # 7 Polarization: -38.29 SS G_CDS: -0.41 Total: -38.70 kcal Atomic # 8 Polarization: -6.23 SS G_CDS: -0.34 Total: -6.57 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.31 -8.27 -37.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404480331.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.009 kcal (2) G-P(sol) polarization free energy of solvation -29.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds