Wall clock time and date at job start Sun Mar 29 2020 22:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46973 * 2 1 4 4 O 1.42897 * 109.46911 * 119.99847 * 2 1 3 5 5 C 1.42908 * 113.99981 * 89.99846 * 4 2 1 6 6 H 1.08997 * 109.53330 * 329.90344 * 5 4 2 7 7 C 1.53120 * 109.50031 * 89.99899 * 5 4 2 8 8 C 1.53123 * 109.21163 * 177.62848 * 7 5 4 9 9 C 1.53037 * 109.27398 * 302.31409 * 8 7 5 10 10 N 1.46848 * 109.52381 * 59.18254 * 9 8 7 11 11 C 1.46900 * 110.99918 * 174.15634 * 10 9 8 12 12 C 1.50707 * 109.47196 * 66.04143 * 11 10 9 13 13 H 1.08000 * 120.00022 * 0.02562 * 12 11 10 14 14 C 1.37877 * 120.00218 * 179.97438 * 12 11 10 15 15 N 1.31511 * 119.99870 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 119.99986 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47141 * 60.00741 * 16 14 12 18 18 H 1.48501 * 109.47014 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47625 * 300.00711 * 16 14 12 20 20 C 1.46845 * 111.19518 * 298.25146 * 10 9 8 21 21 H 1.09003 * 109.47159 * 299.99976 * 1 2 3 22 22 H 1.09002 * 109.47200 * 59.99920 * 1 2 3 23 23 H 1.09004 * 109.47309 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47023 * 239.99536 * 2 1 3 25 25 H 1.09002 * 109.46806 * 180.02562 * 3 2 1 26 26 H 1.08998 * 109.47043 * 299.99580 * 3 2 1 27 27 H 1.09003 * 109.47158 * 60.00024 * 3 2 1 28 28 H 1.09002 * 109.52427 * 57.69122 * 7 5 4 29 29 H 1.08995 * 109.52208 * 297.56441 * 7 5 4 30 30 H 1.08996 * 109.50077 * 62.25431 * 8 7 5 31 31 H 1.08993 * 109.50100 * 182.33643 * 8 7 5 32 32 H 1.09006 * 109.45986 * 179.19524 * 9 8 7 33 33 H 1.08996 * 109.46288 * 299.15727 * 9 8 7 34 34 H 1.08996 * 109.47225 * 186.04271 * 11 10 9 35 35 H 1.09007 * 109.47465 * 306.04862 * 11 10 9 36 36 H 0.97002 * 120.00446 * 179.97438 * 15 14 12 37 37 H 1.09003 * 109.45905 * 181.76430 * 20 10 9 38 38 H 1.09002 * 109.46166 * 301.73872 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2000 -2.0783 0.9887 6 1 1.4931 -2.4526 0.2483 7 6 3.6301 -2.3401 0.5083 8 6 3.8488 -3.8499 0.3765 9 6 3.5765 -4.5195 1.7254 10 7 2.1960 -4.2413 2.1416 11 6 1.8553 -4.9818 3.3637 12 6 2.6863 -4.4674 4.5109 13 1 3.3962 -3.6699 4.3485 14 6 2.5395 -5.0143 5.7681 15 7 1.6746 -5.9850 5.9660 16 14 3.5700 -4.3772 7.1898 17 1 3.2940 -2.9322 7.3928 18 1 3.2254 -5.1257 8.4253 19 1 5.0101 -4.5675 6.8817 20 6 1.9756 -2.8005 2.3206 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8933 -0.5139 -0.8899 25 1 3.1300 1.4425 -0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6766 1.9563 0.8900 28 1 4.3374 -1.9312 1.2298 29 1 3.7819 -1.8642 -0.4604 30 1 3.1678 -4.2521 -0.3735 31 1 4.8781 -4.0435 0.0747 32 1 3.7175 -5.5963 1.6314 33 1 4.2671 -4.1268 2.4717 34 1 0.7981 -4.8428 3.5899 35 1 2.0587 -6.0423 3.2147 36 1 1.5716 -6.3701 6.8503 37 1 0.9537 -2.6288 2.6589 38 1 2.6737 -2.4159 3.0640 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404480331.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:18 Heat of formation + Delta-G solvation = -82.605562 kcal Electronic energy + Delta-G solvation = -16582.539204 eV Core-core repulsion = 14037.387951 eV Total energy + Delta-G solvation = -2545.151253 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.43615 -38.50670 -35.34459 -33.85884 -33.13999 -30.47885 -28.72387 -28.06301 -25.81289 -23.69106 -23.13196 -21.94100 -20.74812 -18.49132 -17.92711 -16.93031 -16.42716 -15.98672 -15.70760 -15.27287 -15.02622 -14.67299 -14.40809 -14.13858 -13.62223 -13.39050 -13.21597 -13.04329 -12.96887 -12.91129 -12.61595 -12.33441 -12.19231 -12.02597 -11.91764 -11.73405 -11.62269 -11.42513 -11.24026 -10.63202 -10.31566 -9.09266 -8.18398 -6.38064 1.34461 1.36230 1.44496 2.35124 2.59272 3.06536 3.52297 3.86257 3.94532 4.05313 4.11417 4.20585 4.30505 4.35289 4.44035 4.64941 4.72438 4.78187 4.90061 4.91639 4.95630 4.98277 5.01503 5.06059 5.10081 5.18282 5.27330 5.28982 5.33341 5.37347 5.43814 5.70994 6.01113 6.20505 6.36323 6.56348 6.81431 7.33223 8.84235 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.029970 B = 0.006791 C = 0.006334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.047151 B = 4122.347553 C = 4419.215432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.071 3.929 3 C -0.145 4.145 4 O -0.400 6.400 5 C 0.104 3.896 6 H 0.071 0.929 7 C -0.132 4.132 8 C -0.103 4.103 9 C 0.057 3.943 10 N -0.536 5.536 11 C 0.201 3.799 12 C -0.561 4.561 13 H 0.053 0.947 14 C 0.013 3.987 15 N -0.925 5.925 16 Si 0.956 3.044 17 H -0.273 1.273 18 H -0.278 1.278 19 H -0.269 1.269 20 C 0.075 3.925 21 H 0.052 0.948 22 H 0.087 0.913 23 H 0.047 0.953 24 H 0.071 0.929 25 H 0.058 0.942 26 H 0.092 0.908 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.063 0.937 33 H 0.016 0.984 34 H 0.004 0.996 35 H 0.012 0.988 36 H 0.266 0.734 37 H 0.049 0.951 38 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.149 10.917 -14.028 17.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.014 3.986 3 C -0.202 4.202 4 O -0.320 6.320 5 C 0.046 3.954 6 H 0.089 0.911 7 C -0.170 4.170 8 C -0.141 4.141 9 C -0.071 4.071 10 N -0.260 5.260 11 C 0.074 3.926 12 C -0.600 4.600 13 H 0.071 0.929 14 C -0.186 4.186 15 N -0.564 5.564 16 Si 0.781 3.219 17 H -0.198 1.198 18 H -0.203 1.203 19 H -0.194 1.194 20 C -0.054 4.054 21 H 0.072 0.928 22 H 0.106 0.894 23 H 0.066 0.934 24 H 0.089 0.911 25 H 0.077 0.923 26 H 0.111 0.889 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.105 0.895 30 H 0.095 0.905 31 H 0.107 0.893 32 H 0.081 0.919 33 H 0.034 0.966 34 H 0.022 0.978 35 H 0.030 0.970 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 1.792 10.739 -14.107 17.820 hybrid contribution 0.651 0.042 1.817 1.931 sum 2.443 10.781 -12.289 16.530 Atomic orbital electron populations 1.22313 0.95731 1.02057 1.03002 1.22363 0.94034 0.94392 0.87829 1.21859 1.01598 0.93635 1.03086 1.87917 1.86541 1.20090 1.37413 1.21992 0.96780 0.80576 0.96084 0.91111 1.22025 0.96192 0.96937 1.01844 1.21533 1.02621 0.93997 0.95948 1.22018 0.88785 0.99998 0.96347 1.62315 1.23466 1.06646 1.33623 1.19412 0.94768 0.92904 0.85486 1.21942 1.22832 1.19677 0.95506 0.92896 1.25801 0.96407 0.94958 1.01477 1.70046 1.36303 1.26391 1.23660 0.85638 0.79290 0.78498 0.78476 1.19831 1.20263 1.19361 1.21730 0.99713 0.88282 0.95639 0.92847 0.89377 0.93422 0.91067 0.92262 0.88917 0.92756 0.92866 0.89512 0.90496 0.89252 0.91851 0.96583 0.97797 0.97033 0.92469 0.93202 0.96408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.69 9.52 71.98 0.69 -3.01 16 2 C 0.07 1.63 3.13 30.59 0.10 1.72 16 3 C -0.14 -2.69 9.56 71.98 0.69 -2.00 16 4 O -0.40 -12.77 9.64 -148.98 -1.44 -14.21 16 5 C 0.10 3.41 2.57 30.69 0.08 3.48 16 6 H 0.07 2.19 7.63 -2.39 -0.02 2.17 16 7 C -0.13 -3.76 5.61 30.68 0.17 -3.59 16 8 C -0.10 -2.95 6.09 30.65 0.19 -2.77 16 9 C 0.06 2.23 5.13 86.33 0.44 2.67 16 10 N -0.54 -24.07 4.86 -900.64 -4.38 -28.45 16 11 C 0.20 10.99 5.13 85.56 0.44 11.43 16 12 C -0.56 -32.30 7.74 25.60 0.20 -32.10 16 13 H 0.05 3.04 5.84 -2.91 -0.02 3.02 16 14 C 0.01 0.77 5.46 84.65 0.46 1.23 16 15 N -0.92 -56.07 13.29 21.45 0.28 -55.79 16 16 Si 0.96 45.12 29.54 68.60 2.03 47.14 16 17 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 18 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 19 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 20 C 0.08 3.21 4.67 86.37 0.40 3.61 16 21 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 22 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 23 H 0.05 1.11 7.97 -2.38 -0.02 1.09 16 24 H 0.07 1.42 7.65 -2.39 -0.02 1.40 16 25 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.09 1.95 7.99 -2.39 -0.02 1.93 16 30 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.06 2.49 8.06 -2.38 -0.02 2.47 16 33 H 0.02 0.69 7.03 -2.39 -0.02 0.68 16 34 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 35 H 0.01 0.67 8.06 -2.38 -0.02 0.65 16 36 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 37 H 0.05 2.26 8.12 -2.39 -0.02 2.24 16 38 H 0.02 0.85 6.57 -2.39 -0.02 0.83 16 Total: -1.00 -64.62 299.79 1.35 -63.27 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: 0.99 Total: 7.34 kcal Atomic # 6 Polarization: -23.17 SS G_CDS: 3.85 Total: -19.31 kcal Atomic # 7 Polarization: -80.15 SS G_CDS: -4.09 Total: -84.24 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: -1.44 Total: -14.21 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.14 kcal Total: -64.62 1.35 -63.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404480331.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.333 kcal (2) G-P(sol) polarization free energy of solvation -64.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds