Wall clock time and date at job start Sun Mar 29 2020 22:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46833 * 2 1 4 4 N 1.46899 * 109.47006 * 119.99760 * 2 1 3 5 5 C 1.46904 * 111.00271 * 309.14795 * 4 2 1 6 6 C 1.52994 * 109.47545 * 201.68705 * 5 4 2 7 7 O 1.42900 * 109.46811 * 63.22716 * 6 5 4 8 8 C 1.42904 * 114.00085 * 175.02049 * 7 6 5 9 9 C 1.50701 * 109.47023 * 179.97438 * 8 7 6 10 10 H 1.07996 * 120.00342 * 0.02562 * 9 8 7 11 11 C 1.37883 * 119.99715 * 180.02562 * 9 8 7 12 12 N 1.31511 * 120.00168 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 119.99753 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46775 * 90.00309 * 13 11 9 15 15 H 1.48504 * 109.47115 * 209.99835 * 13 11 9 16 16 H 1.48493 * 109.47532 * 330.00376 * 13 11 9 17 17 C 1.46903 * 111.00065 * 73.10351 * 4 2 1 18 18 C 1.52998 * 117.50127 * 230.72243 * 17 4 2 19 19 C 1.52994 * 59.99998 * 252.51394 * 18 17 4 20 20 H 1.08999 * 109.47809 * 299.99625 * 1 2 3 21 21 H 1.09002 * 109.47485 * 60.00254 * 1 2 3 22 22 H 1.09009 * 109.47268 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47370 * 239.99748 * 2 1 3 24 24 H 1.09003 * 109.47470 * 184.73160 * 3 2 1 25 25 H 1.08997 * 109.47714 * 304.73653 * 3 2 1 26 26 H 1.09008 * 109.47482 * 64.73493 * 3 2 1 27 27 H 1.09006 * 109.46780 * 81.68700 * 5 4 2 28 28 H 1.09000 * 109.47225 * 321.69225 * 5 4 2 29 29 H 1.08998 * 109.47196 * 303.23081 * 6 5 4 30 30 H 1.09003 * 109.47506 * 183.22517 * 6 5 4 31 31 H 1.08992 * 109.47329 * 300.00263 * 8 7 6 32 32 H 1.09007 * 109.46675 * 60.00591 * 8 7 6 33 33 H 0.96994 * 120.00247 * 179.97438 * 12 11 9 34 34 H 1.09000 * 115.54703 * 16.43751 * 17 4 2 35 35 H 1.09005 * 117.49594 * 0.02562 * 18 17 4 36 36 H 1.08995 * 117.49998 * 145.02163 * 18 17 4 37 37 H 1.09003 * 117.49672 * 252.51183 * 19 18 17 38 38 H 1.09002 * 117.52080 * 107.48749 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 1.3788 -0.1638 2.4111 6 6 2.2490 -0.4818 3.6286 7 8 3.5069 0.1843 3.5020 8 6 4.3561 0.0445 4.6428 9 6 5.6480 0.7817 4.4007 10 1 5.8047 1.3051 3.4692 11 6 6.6299 0.7880 5.3687 12 7 6.4393 0.1503 6.5029 13 14 8.2315 1.7013 5.0684 14 1 8.0998 3.1014 5.5454 15 1 9.3308 1.0284 5.8060 16 1 8.5371 1.7002 3.6153 17 6 1.8193 -2.1435 1.0883 18 6 1.1270 -2.8525 2.2541 19 6 2.6279 -3.0421 2.0261 20 1 -0.3635 0.5137 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8933 -0.5138 -0.8899 24 1 3.1266 1.4438 -0.0848 25 1 1.6090 1.9803 -0.8445 26 1 1.7475 1.9313 0.9294 27 1 0.3988 -0.6250 2.5345 28 1 1.2631 0.9161 2.3192 29 1 2.4121 -1.5579 3.6875 30 1 1.7465 -0.1404 4.5336 31 1 3.8588 0.4601 5.5191 32 1 4.5670 -1.0116 4.8114 33 1 7.1301 0.1544 7.1837 34 1 1.6201 -2.5149 0.0831 35 1 0.8198 -2.2421 3.1033 36 1 0.4719 -3.6904 2.0159 37 1 2.9603 -4.0049 1.6379 38 1 3.3088 -2.5567 2.7253 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590154291.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:04 Heat of formation + Delta-G solvation = -10.824772 kcal Electronic energy + Delta-G solvation = -16529.735397 eV Core-core repulsion = 13987.696793 eV Total energy + Delta-G solvation = -2542.038604 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.50712 -36.23436 -35.28050 -32.68244 -30.86996 -28.45616 -27.07683 -26.70760 -22.76530 -22.12599 -21.88940 -21.13304 -19.25281 -16.91178 -16.24728 -15.68994 -14.98366 -14.54345 -14.34934 -13.92221 -13.86408 -13.39762 -12.95923 -12.69483 -12.36991 -11.91169 -11.77368 -11.57870 -11.25452 -11.17512 -10.98843 -10.79475 -10.76400 -10.52636 -10.37309 -10.16693 -10.07145 -9.89205 -9.00364 -8.68139 -8.02605 -7.79172 -6.03879 -4.04431 3.34796 3.39519 3.45744 3.83354 4.17905 4.41608 4.89735 4.92760 5.09119 5.13006 5.17997 5.30165 5.32595 5.34179 5.54219 5.68118 5.72662 5.76092 5.78059 5.89359 5.94335 6.00558 6.05084 6.14736 6.22391 6.31084 6.40772 6.52394 6.60545 7.19371 7.35001 7.42847 7.52390 7.88407 8.25548 8.72173 9.11176 9.60259 11.07881 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.031962 B = 0.006441 C = 0.005851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.822152 B = 4346.138777 C = 4784.398422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.079 3.921 3 C -0.142 4.142 4 N -0.485 5.485 5 C 0.053 3.947 6 C 0.053 3.947 7 O -0.377 6.377 8 C 0.194 3.806 9 C -0.508 4.508 10 H 0.066 0.934 11 C 0.055 3.945 12 N -0.901 5.901 13 Si 0.906 3.094 14 H -0.280 1.280 15 H -0.286 1.286 16 H -0.271 1.271 17 C 0.023 3.977 18 C -0.222 4.222 19 C -0.173 4.173 20 H 0.058 0.942 21 H 0.056 0.944 22 H 0.052 0.948 23 H 0.078 0.922 24 H 0.067 0.933 25 H 0.052 0.948 26 H 0.059 0.941 27 H 0.049 0.951 28 H 0.080 0.920 29 H 0.051 0.949 30 H 0.033 0.967 31 H 0.000 1.000 32 H 0.002 0.998 33 H 0.263 0.737 34 H 0.107 0.893 35 H 0.103 0.897 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.321 -3.183 -10.914 16.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.029 4.029 3 C -0.200 4.200 4 N -0.206 5.206 5 C -0.074 4.074 6 C -0.025 4.025 7 O -0.297 6.297 8 C 0.120 3.880 9 C -0.547 4.547 10 H 0.084 0.916 11 C -0.146 4.146 12 N -0.540 5.540 13 Si 0.733 3.267 14 H -0.206 1.206 15 H -0.212 1.212 16 H -0.196 1.196 17 C -0.086 4.086 18 C -0.261 4.261 19 C -0.211 4.211 20 H 0.077 0.923 21 H 0.075 0.925 22 H 0.072 0.928 23 H 0.096 0.904 24 H 0.086 0.914 25 H 0.071 0.929 26 H 0.078 0.922 27 H 0.067 0.933 28 H 0.099 0.901 29 H 0.068 0.932 30 H 0.051 0.949 31 H 0.018 0.982 32 H 0.020 0.980 33 H 0.072 0.928 34 H 0.125 0.875 35 H 0.121 0.879 36 H 0.106 0.894 37 H 0.109 0.891 38 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -11.655 -2.999 -10.881 16.224 hybrid contribution -0.101 0.026 0.285 0.304 sum -11.756 -2.974 -10.596 16.103 Atomic orbital electron populations 1.22545 0.97856 1.01682 1.02167 1.21743 0.92186 0.95977 0.93020 1.21827 1.02421 0.94391 1.01357 1.61943 1.56235 1.00720 1.01697 1.22335 0.94623 1.00627 0.89859 1.22641 0.87712 0.97220 0.94958 1.87951 1.25524 1.73585 1.42594 1.20156 0.88798 0.95805 0.83281 1.21068 0.99085 1.31999 1.02513 0.91559 1.24944 0.98907 0.95867 0.94869 1.69964 1.34628 1.42886 1.06563 0.86364 0.82308 0.79543 0.78443 1.20558 1.21160 1.19619 1.22576 1.03828 0.87578 0.94645 1.23591 0.96405 1.03753 1.02316 1.23308 0.93761 1.00416 1.03595 0.92313 0.92469 0.92847 0.90375 0.91434 0.92893 0.92193 0.93307 0.90141 0.93160 0.94862 0.98187 0.98044 0.92790 0.87540 0.87858 0.89416 0.89127 0.86991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.93 8.53 37.16 0.32 -1.62 16 2 C 0.08 1.01 2.83 -67.72 -0.19 0.81 16 3 C -0.14 -1.87 9.29 37.16 0.35 -1.52 16 4 N -0.48 -7.46 4.48 -218.72 -0.98 -8.44 16 5 C 0.05 0.83 3.43 -3.82 -0.01 0.81 16 6 C 0.05 1.01 5.12 37.15 0.19 1.20 16 7 O -0.38 -9.37 10.25 -35.23 -0.36 -9.73 16 8 C 0.19 5.48 5.69 36.01 0.20 5.68 16 9 C -0.51 -15.35 9.43 -34.44 -0.32 -15.67 16 10 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 11 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 12 N -0.90 -27.50 13.29 55.43 0.74 -26.76 16 13 Si 0.91 22.32 29.54 -169.99 -5.02 17.30 16 14 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 15 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 16 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 17 C 0.02 0.32 5.31 -67.71 -0.36 -0.04 16 18 C -0.22 -2.84 8.87 -26.74 -0.24 -3.08 16 19 C -0.17 -2.55 9.65 -26.74 -0.26 -2.81 16 20 H 0.06 0.64 6.66 -51.93 -0.35 0.29 16 21 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 22 H 0.05 0.54 7.63 -51.92 -0.40 0.15 16 23 H 0.08 0.94 7.89 -51.93 -0.41 0.53 16 24 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.84 6.26 -51.92 -0.32 0.52 16 27 H 0.05 0.66 5.82 -51.93 -0.30 0.36 16 28 H 0.08 1.27 5.79 -51.93 -0.30 0.97 16 29 H 0.05 0.95 3.75 -51.93 -0.19 0.75 16 30 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.00 0.01 8.14 -51.93 -0.42 -0.41 16 32 H 0.00 0.05 8.14 -51.92 -0.42 -0.37 16 33 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 34 H 0.11 1.27 7.80 -51.93 -0.41 0.86 16 35 H 0.10 1.39 4.75 -51.93 -0.25 1.14 16 36 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.11 2.04 6.16 -51.93 -0.32 1.72 16 LS Contribution 296.24 15.07 4.46 4.46 Total: -1.00 -31.58 296.24 -7.76 -39.34 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: -6.17 Total: -1.46 kcal Atomic # 6 Polarization: -14.28 SS G_CDS: -0.42 Total: -14.70 kcal Atomic # 7 Polarization: -34.96 SS G_CDS: -0.24 Total: -35.20 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: -0.36 Total: -9.73 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -31.58 -7.76 -39.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590154291.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.513 kcal (2) G-P(sol) polarization free energy of solvation -31.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds