Wall clock time and date at job start Sun Mar 29 2020 22:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46833 * 2 1 4 4 N 1.46899 * 109.47006 * 119.99760 * 2 1 3 5 5 C 1.46904 * 111.00271 * 309.14795 * 4 2 1 6 6 C 1.52994 * 109.47545 * 201.68705 * 5 4 2 7 7 O 1.42900 * 109.46811 * 63.22716 * 6 5 4 8 8 C 1.42904 * 114.00085 * 175.02049 * 7 6 5 9 9 C 1.50701 * 109.47023 * 179.97438 * 8 7 6 10 10 H 1.07996 * 120.00342 * 0.02562 * 9 8 7 11 11 C 1.37883 * 119.99715 * 180.02562 * 9 8 7 12 12 N 1.31511 * 120.00168 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 119.99753 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46775 * 90.00309 * 13 11 9 15 15 H 1.48504 * 109.47115 * 209.99835 * 13 11 9 16 16 H 1.48493 * 109.47532 * 330.00376 * 13 11 9 17 17 C 1.46903 * 111.00065 * 73.10351 * 4 2 1 18 18 C 1.52998 * 117.50127 * 230.72243 * 17 4 2 19 19 C 1.52994 * 59.99998 * 252.51394 * 18 17 4 20 20 H 1.08999 * 109.47809 * 299.99625 * 1 2 3 21 21 H 1.09002 * 109.47485 * 60.00254 * 1 2 3 22 22 H 1.09009 * 109.47268 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47370 * 239.99748 * 2 1 3 24 24 H 1.09003 * 109.47470 * 184.73160 * 3 2 1 25 25 H 1.08997 * 109.47714 * 304.73653 * 3 2 1 26 26 H 1.09008 * 109.47482 * 64.73493 * 3 2 1 27 27 H 1.09006 * 109.46780 * 81.68700 * 5 4 2 28 28 H 1.09000 * 109.47225 * 321.69225 * 5 4 2 29 29 H 1.08998 * 109.47196 * 303.23081 * 6 5 4 30 30 H 1.09003 * 109.47506 * 183.22517 * 6 5 4 31 31 H 1.08992 * 109.47329 * 300.00263 * 8 7 6 32 32 H 1.09007 * 109.46675 * 60.00591 * 8 7 6 33 33 H 0.96994 * 120.00247 * 179.97438 * 12 11 9 34 34 H 1.09000 * 115.54703 * 16.43751 * 17 4 2 35 35 H 1.09005 * 117.49594 * 0.02562 * 18 17 4 36 36 H 1.08995 * 117.49998 * 145.02163 * 18 17 4 37 37 H 1.09003 * 117.49672 * 252.51183 * 19 18 17 38 38 H 1.09002 * 117.52080 * 107.48749 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 1.3788 -0.1638 2.4111 6 6 2.2490 -0.4818 3.6286 7 8 3.5069 0.1843 3.5020 8 6 4.3561 0.0445 4.6428 9 6 5.6480 0.7817 4.4007 10 1 5.8047 1.3051 3.4692 11 6 6.6299 0.7880 5.3687 12 7 6.4393 0.1503 6.5029 13 14 8.2315 1.7013 5.0684 14 1 8.0998 3.1014 5.5454 15 1 9.3308 1.0284 5.8060 16 1 8.5371 1.7002 3.6153 17 6 1.8193 -2.1435 1.0883 18 6 1.1270 -2.8525 2.2541 19 6 2.6279 -3.0421 2.0261 20 1 -0.3635 0.5137 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8933 -0.5138 -0.8899 24 1 3.1266 1.4438 -0.0848 25 1 1.6090 1.9803 -0.8445 26 1 1.7475 1.9313 0.9294 27 1 0.3988 -0.6250 2.5345 28 1 1.2631 0.9161 2.3192 29 1 2.4121 -1.5579 3.6875 30 1 1.7465 -0.1404 4.5336 31 1 3.8588 0.4601 5.5191 32 1 4.5670 -1.0116 4.8114 33 1 7.1301 0.1544 7.1837 34 1 1.6201 -2.5149 0.0831 35 1 0.8198 -2.2421 3.1033 36 1 0.4719 -3.6904 2.0159 37 1 2.9603 -4.0049 1.6379 38 1 3.3088 -2.5567 2.7253 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590154291.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:04 Heat of formation + Delta-G solvation = -31.921491 kcal Electronic energy + Delta-G solvation = -16530.650220 eV Core-core repulsion = 13987.696793 eV Total energy + Delta-G solvation = -2542.953426 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.68590 -38.11470 -36.32799 -34.92428 -32.22252 -29.95864 -28.71644 -27.98606 -24.59504 -23.90079 -23.06373 -22.16747 -20.40036 -18.68889 -18.09181 -17.26568 -16.52612 -16.13868 -15.92058 -15.50795 -15.04634 -14.75835 -14.34016 -13.93005 -13.83923 -13.57716 -12.96209 -12.92408 -12.73242 -12.67647 -12.55163 -12.37767 -12.19634 -11.99720 -11.70722 -11.54927 -11.42298 -11.23178 -11.15253 -10.79750 -10.10183 -8.90306 -8.31531 -6.43542 1.38736 1.42082 1.54336 2.35157 2.73369 3.01827 3.10084 3.26965 3.86496 4.05109 4.09531 4.11365 4.16824 4.29565 4.41887 4.46202 4.49820 4.65197 4.71280 4.78596 4.79586 4.86731 4.90620 4.95904 5.03278 5.12958 5.16350 5.20711 5.32878 5.36276 5.45793 5.55964 5.98219 6.19864 6.37156 6.58646 6.88363 7.28897 8.81019 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.031962 B = 0.006441 C = 0.005851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.822152 B = 4346.138777 C = 4784.398422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.078 3.922 3 C -0.141 4.141 4 N -0.516 5.516 5 C 0.065 3.935 6 C 0.042 3.958 7 O -0.391 6.391 8 C 0.211 3.789 9 C -0.544 4.544 10 H 0.059 0.941 11 C 0.006 3.994 12 N -0.932 5.932 13 Si 0.983 3.017 14 H -0.266 1.266 15 H -0.273 1.273 16 H -0.266 1.266 17 C 0.026 3.974 18 C -0.203 4.203 19 C -0.196 4.196 20 H 0.053 0.947 21 H 0.074 0.926 22 H 0.061 0.939 23 H 0.088 0.912 24 H 0.041 0.959 25 H 0.080 0.920 26 H 0.044 0.956 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.054 0.946 30 H 0.036 0.964 31 H -0.020 1.020 32 H -0.021 1.021 33 H 0.270 0.730 34 H 0.132 0.868 35 H 0.094 0.906 36 H 0.116 0.884 37 H 0.108 0.892 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.011 -3.119 -12.393 18.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.029 4.029 3 C -0.198 4.198 4 N -0.238 5.238 5 C -0.062 4.062 6 C -0.035 4.035 7 O -0.310 6.310 8 C 0.136 3.864 9 C -0.582 4.582 10 H 0.077 0.923 11 C -0.193 4.193 12 N -0.571 5.571 13 Si 0.805 3.195 14 H -0.191 1.191 15 H -0.198 1.198 16 H -0.190 1.190 17 C -0.083 4.083 18 C -0.242 4.242 19 C -0.234 4.234 20 H 0.072 0.928 21 H 0.093 0.907 22 H 0.080 0.920 23 H 0.106 0.894 24 H 0.060 0.940 25 H 0.098 0.902 26 H 0.063 0.937 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.072 0.928 30 H 0.054 0.946 31 H -0.002 1.002 32 H -0.004 1.004 33 H 0.079 0.921 34 H 0.150 0.850 35 H 0.112 0.888 36 H 0.135 0.865 37 H 0.126 0.874 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -12.372 -2.938 -12.369 17.739 hybrid contribution 0.066 -0.039 0.749 0.752 sum -12.306 -2.977 -11.620 17.185 Atomic orbital electron populations 1.22442 0.95647 1.02433 1.02830 1.21806 0.93926 0.95131 0.92051 1.21823 1.00877 0.95377 1.01751 1.61804 1.57530 1.02048 1.02453 1.22183 0.94687 1.00732 0.88609 1.23017 0.85915 0.97142 0.97419 1.87906 1.27518 1.74458 1.41144 1.19749 0.89058 0.93912 0.83699 1.21365 1.00609 1.33313 1.02891 0.92275 1.25969 1.02788 0.96312 0.94183 1.70073 1.36187 1.43478 1.07389 0.85190 0.77099 0.78474 0.78692 1.19137 1.19786 1.19006 1.22712 1.03119 0.86540 0.95925 1.23603 0.95081 1.04068 1.01422 1.23223 0.94532 1.01476 1.04165 0.92803 0.90668 0.92004 0.89350 0.94022 0.90161 0.93664 0.90451 0.90506 0.92807 0.94622 1.00183 1.00364 0.92078 0.85024 0.88778 0.86532 0.87416 0.91406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.13 8.53 71.98 0.61 -2.51 16 2 C 0.08 1.84 2.83 44.91 0.13 1.97 16 3 C -0.14 -3.57 9.29 71.98 0.67 -2.90 16 4 N -0.52 -15.45 4.48 -845.91 -3.79 -19.24 16 5 C 0.07 2.00 3.43 86.30 0.30 2.30 16 6 C 0.04 1.68 5.12 71.98 0.37 2.05 16 7 O -0.39 -20.29 10.25 -148.98 -1.53 -21.82 16 8 C 0.21 12.51 5.69 71.24 0.41 12.92 16 9 C -0.54 -33.87 9.43 25.60 0.24 -33.63 16 10 H 0.06 3.67 7.81 -2.91 -0.02 3.65 16 11 C 0.01 0.34 5.46 84.66 0.46 0.80 16 12 N -0.93 -57.71 13.29 21.45 0.28 -57.43 16 13 Si 0.98 45.82 29.54 68.60 2.03 47.85 16 14 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 15 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 16 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 17 C 0.03 0.67 5.31 44.91 0.24 0.91 16 18 C -0.20 -4.80 8.87 30.59 0.27 -4.53 16 19 C -0.20 -5.74 9.65 30.59 0.30 -5.44 16 20 H 0.05 1.02 6.66 -2.39 -0.02 1.01 16 21 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 22 H 0.06 1.02 7.63 -2.38 -0.02 1.00 16 23 H 0.09 1.90 7.89 -2.39 -0.02 1.88 16 24 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.04 1.26 6.26 -2.38 -0.01 1.25 16 27 H 0.08 1.94 5.82 -2.38 -0.01 1.93 16 28 H 0.08 2.41 5.79 -2.39 -0.01 2.40 16 29 H 0.05 2.12 3.75 -2.39 -0.01 2.11 16 30 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 31 H -0.02 -1.20 8.14 -2.39 -0.02 -1.22 16 32 H -0.02 -1.33 8.14 -2.38 -0.02 -1.35 16 33 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 34 H 0.13 2.70 7.80 -2.39 -0.02 2.68 16 35 H 0.09 2.39 4.75 -2.38 -0.01 2.38 16 36 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.11 2.69 8.14 -2.39 -0.02 2.67 16 38 H 0.07 2.61 6.16 -2.39 -0.01 2.60 16 Total: -1.00 -69.65 296.24 2.01 -67.64 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: 1.02 Total: 11.08 kcal Atomic # 6 Polarization: -32.06 SS G_CDS: 3.99 Total: -28.07 kcal Atomic # 7 Polarization: -73.17 SS G_CDS: -3.50 Total: -76.67 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: -1.53 Total: -21.82 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Total: -69.65 2.01 -67.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590154291.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.714 kcal (2) G-P(sol) polarization free energy of solvation -69.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds