Wall clock time and date at job start Sun Mar 29 2020 22:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 110.42497 * 2 1 4 4 C 1.54910 * 110.37087 * 237.68685 * 2 1 3 5 5 C 1.55144 * 101.65232 * 204.10340 * 4 2 1 6 6 C 1.54316 * 103.02093 * 35.65282 * 5 4 2 7 7 H 1.09000 * 110.01920 * 97.19865 * 6 5 4 8 8 C 1.53001 * 109.88896 * 218.31059 * 6 5 4 9 9 N 1.47444 * 107.23256 * 337.71702 * 6 5 4 10 10 C 1.46893 * 110.99989 * 236.74326 * 9 6 5 11 11 C 1.52999 * 109.47323 * 170.00169 * 10 9 6 12 12 O 1.42898 * 109.47174 * 64.99551 * 11 10 9 13 13 C 1.42909 * 114.00197 * 180.02562 * 12 11 10 14 14 C 1.50696 * 109.47070 * 180.02562 * 13 12 11 15 15 H 1.07999 * 120.00202 * 359.97438 * 14 13 12 16 16 C 1.37884 * 119.99746 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99573 * 0.27650 * 16 14 13 18 18 Si 1.86800 * 119.99781 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47035 * 60.00183 * 18 16 14 20 20 H 1.48503 * 109.46845 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47237 * 299.99939 * 18 16 14 22 22 H 1.09001 * 109.46520 * 297.68648 * 1 2 3 23 23 H 1.09001 * 109.47122 * 57.68312 * 1 2 3 24 24 H 1.09002 * 109.47273 * 177.68604 * 1 2 3 25 25 H 1.08999 * 110.99093 * 86.01271 * 4 2 1 26 26 H 1.09000 * 111.02641 * 322.20613 * 4 2 1 27 27 H 1.09001 * 110.70174 * 277.26989 * 5 4 2 28 28 H 1.09003 * 110.85654 * 154.10949 * 5 4 2 29 29 H 1.09001 * 109.46624 * 177.77020 * 8 6 5 30 30 H 1.09000 * 109.47255 * 297.76799 * 8 6 5 31 31 H 1.08999 * 109.46991 * 57.77320 * 8 6 5 32 32 H 1.08999 * 109.47380 * 50.00071 * 10 9 6 33 33 H 1.09001 * 109.47114 * 289.99520 * 10 9 6 34 34 H 1.09008 * 109.47150 * 305.00033 * 11 10 9 35 35 H 1.08998 * 109.47779 * 184.99685 * 11 10 9 36 36 H 1.09000 * 109.46355 * 60.00386 * 13 12 11 37 37 H 1.08999 * 109.46615 * 300.00542 * 13 12 11 38 38 H 0.97001 * 120.00651 * 359.71956 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9104 1.0215 0.0000 4 6 2.0692 -0.7763 -1.2273 5 6 3.4786 -1.1996 -0.7358 6 6 3.2535 -1.4808 0.7647 7 1 3.1066 -2.5487 0.9263 8 6 4.4584 -0.9934 1.5720 9 7 2.0447 -0.7409 1.1713 10 6 2.3358 0.1716 2.2850 11 6 1.1375 1.0947 2.5146 12 8 0.0153 0.3208 2.9433 13 6 -1.1635 1.0913 3.1864 14 6 -2.2771 0.1788 3.6314 15 1 -2.1025 -0.8833 3.7194 16 6 -3.5194 0.6999 3.9253 17 7 -3.7338 1.9925 3.8120 18 14 -4.9001 -0.4313 4.4763 19 1 -4.4997 -1.1297 5.7241 20 1 -6.1250 0.3695 4.7290 21 1 -5.1732 -1.4327 3.4142 22 1 -0.3632 0.4775 0.9100 23 1 -0.3633 0.5494 -0.8685 24 1 -0.3634 -1.0268 -0.0415 25 1 2.1388 -0.1271 -2.1002 26 1 1.4517 -1.6488 -1.4404 27 1 4.1941 -0.3889 -0.8730 28 1 3.8148 -2.0998 -1.2505 29 1 4.2753 -1.1592 2.6337 30 1 5.3477 -1.5445 1.2662 31 1 4.6103 0.0707 1.3913 32 1 3.2145 0.7700 2.0443 33 1 2.5268 -0.4073 3.1886 34 1 0.8909 1.6081 1.5851 35 1 1.3861 1.8293 3.2805 36 1 -1.4574 1.6042 2.2707 37 1 -0.9627 1.8261 3.9661 38 1 -3.0170 2.5799 3.5256 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590162380.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:35 Heat of formation + Delta-G solvation = -46.740862 kcal Electronic energy + Delta-G solvation = -16686.590049 eV Core-core repulsion = 14142.994007 eV Total energy + Delta-G solvation = -2543.596043 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.75993 -36.71581 -33.18130 -32.75954 -32.03134 -28.24136 -27.68946 -26.09319 -23.98643 -22.47343 -21.98904 -20.75029 -18.86289 -16.98214 -16.14415 -16.04472 -15.60973 -14.78475 -14.23777 -13.69930 -13.65937 -13.18080 -12.76857 -12.68732 -12.39715 -12.15271 -11.76033 -11.71754 -11.33584 -11.26355 -10.97210 -10.92959 -10.70873 -10.62531 -10.52427 -10.24338 -10.07279 -9.95972 -8.77206 -8.58263 -8.17924 -7.95420 -6.41492 -4.09302 3.46577 3.49416 3.68048 4.06301 4.48456 4.63401 4.72123 4.84847 4.89964 5.23345 5.27034 5.36171 5.38109 5.48395 5.52843 5.62441 5.63766 5.75564 5.83166 5.91821 5.95747 5.98229 6.02381 6.16585 6.23307 6.31337 6.36947 6.54082 6.78015 7.02364 7.18045 7.33468 7.38310 7.96788 8.24578 8.71290 8.87095 9.61043 10.98630 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.041719 B = 0.006020 C = 0.005816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.991130 B = 4649.750921 C = 4813.051068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.073 3.927 3 H 0.046 0.954 4 C -0.126 4.126 5 C -0.138 4.138 6 C 0.067 3.933 7 H 0.083 0.917 8 C -0.169 4.169 9 N -0.507 5.507 10 C 0.053 3.947 11 C 0.052 3.948 12 O -0.366 6.366 13 C 0.184 3.816 14 C -0.591 4.591 15 H 0.061 0.939 16 C 0.016 3.984 17 N -0.913 5.913 18 Si 1.078 2.922 19 H -0.286 1.286 20 H -0.282 1.282 21 H -0.286 1.286 22 H 0.088 0.912 23 H 0.044 0.956 24 H 0.059 0.941 25 H 0.068 0.932 26 H 0.076 0.924 27 H 0.064 0.936 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.046 0.954 33 H 0.081 0.919 34 H 0.042 0.958 35 H 0.037 0.963 36 H -0.006 1.006 37 H -0.009 1.009 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.675 -3.833 -8.215 17.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.035 4.035 3 H 0.064 0.936 4 C -0.164 4.164 5 C -0.177 4.177 6 C -0.041 4.041 7 H 0.101 0.899 8 C -0.227 4.227 9 N -0.232 5.232 10 C -0.075 4.075 11 C -0.026 4.026 12 O -0.285 6.285 13 C 0.110 3.890 14 C -0.629 4.629 15 H 0.079 0.921 16 C -0.187 4.187 17 N -0.549 5.549 18 Si 0.905 3.095 19 H -0.213 1.213 20 H -0.207 1.207 21 H -0.212 1.212 22 H 0.106 0.894 23 H 0.063 0.937 24 H 0.078 0.922 25 H 0.087 0.913 26 H 0.094 0.906 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.099 0.901 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.011 0.989 37 H 0.009 0.991 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 12.704 -4.406 -7.532 15.412 hybrid contribution 2.350 1.021 -0.771 2.676 sum 15.054 -3.384 -8.304 17.522 Atomic orbital electron populations 1.22024 0.92972 1.02895 1.02802 1.22540 0.96965 0.95142 0.88891 0.93575 1.22768 0.95793 1.00496 0.97337 1.22871 0.97456 1.01312 0.96012 1.22446 0.88806 0.99583 0.93315 0.89856 1.22359 0.98103 1.01085 1.01161 1.63701 1.26997 1.26262 1.06255 1.22402 0.95330 0.94486 0.95274 1.22523 0.88601 0.93586 0.97857 1.88026 1.19367 1.34202 1.86941 1.20256 0.82909 0.92328 0.93548 1.21892 0.96072 0.95832 1.49119 0.92111 1.25911 0.99514 0.98388 0.94858 1.70802 1.36142 1.03561 1.44431 0.83419 0.75170 0.74404 0.76488 1.21263 1.20722 1.21209 0.89369 0.93729 0.92159 0.91313 0.90558 0.91767 0.91126 0.91666 0.92435 0.92512 0.93588 0.90059 0.94037 0.94533 0.98862 0.99148 0.92412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 8.99 37.16 0.33 -2.33 16 2 C 0.07 1.10 2.37 -66.18 -0.16 0.94 16 3 H 0.05 0.69 7.06 -51.93 -0.37 0.32 16 4 C -0.13 -1.54 6.49 -24.59 -0.16 -1.70 16 5 C -0.14 -1.49 6.47 -24.91 -0.16 -1.65 16 6 C 0.07 0.84 4.02 -66.72 -0.27 0.57 16 7 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 8 C -0.17 -1.80 7.79 37.16 0.29 -1.51 16 9 N -0.51 -8.09 4.93 -215.53 -1.06 -9.15 16 10 C 0.05 0.84 4.29 -3.83 -0.02 0.82 16 11 C 0.05 1.00 5.16 37.16 0.19 1.19 16 12 O -0.37 -8.99 8.90 -35.23 -0.31 -9.31 16 13 C 0.18 5.08 4.50 36.00 0.16 5.24 16 14 C -0.59 -17.84 9.43 -34.44 -0.32 -18.16 16 15 H 0.06 1.86 7.81 -52.49 -0.41 1.45 16 16 C 0.02 0.48 5.46 -17.82 -0.10 0.38 16 17 N -0.91 -28.32 13.65 55.43 0.76 -27.56 16 18 Si 1.08 25.93 29.90 -169.99 -5.08 20.84 16 19 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 22 H 0.09 1.88 3.16 -51.93 -0.16 1.71 16 23 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.06 1.12 8.13 -51.93 -0.42 0.69 16 25 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.08 0.96 8.05 -51.93 -0.42 0.54 16 27 H 0.06 0.64 7.84 -51.93 -0.41 0.24 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.72 6.87 -51.93 -0.36 0.37 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.59 6.56 -51.93 -0.34 0.25 16 32 H 0.05 0.62 5.85 -51.93 -0.30 0.32 16 33 H 0.08 1.32 7.33 -51.93 -0.38 0.94 16 34 H 0.04 0.78 5.23 -51.92 -0.27 0.50 16 35 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 36 H -0.01 -0.17 7.33 -51.93 -0.38 -0.55 16 37 H -0.01 -0.26 8.01 -51.93 -0.42 -0.67 16 38 H 0.27 8.20 7.22 -40.82 -0.29 7.91 16 LS Contribution 288.97 15.07 4.35 4.35 Total: -1.00 -32.00 288.97 -7.82 -39.82 By element: Atomic # 1 Polarization: 3.47 SS G_CDS: -6.26 Total: -2.80 kcal Atomic # 6 Polarization: -15.99 SS G_CDS: -0.21 Total: -16.20 kcal Atomic # 7 Polarization: -36.41 SS G_CDS: -0.31 Total: -36.72 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: -0.31 Total: -9.31 kcal Atomic # 14 Polarization: 25.93 SS G_CDS: -5.08 Total: 20.84 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -32.00 -7.82 -39.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590162380.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.923 kcal (2) G-P(sol) polarization free energy of solvation -31.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds