Wall clock time and date at job start Sun Mar 29 2020 22:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 110.42497 * 2 1 4 4 C 1.54910 * 110.37087 * 237.68685 * 2 1 3 5 5 C 1.55144 * 101.65232 * 204.10340 * 4 2 1 6 6 C 1.54316 * 103.02093 * 35.65282 * 5 4 2 7 7 H 1.09000 * 110.01920 * 97.19865 * 6 5 4 8 8 C 1.53001 * 109.88896 * 218.31059 * 6 5 4 9 9 N 1.47444 * 107.23256 * 337.71702 * 6 5 4 10 10 C 1.46893 * 110.99989 * 236.74326 * 9 6 5 11 11 C 1.52999 * 109.47323 * 170.00169 * 10 9 6 12 12 O 1.42898 * 109.47174 * 64.99551 * 11 10 9 13 13 C 1.42909 * 114.00197 * 180.02562 * 12 11 10 14 14 C 1.50696 * 109.47070 * 180.02562 * 13 12 11 15 15 H 1.07999 * 120.00202 * 359.97438 * 14 13 12 16 16 C 1.37884 * 119.99746 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99573 * 0.27650 * 16 14 13 18 18 Si 1.86800 * 119.99781 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47035 * 60.00183 * 18 16 14 20 20 H 1.48503 * 109.46845 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47237 * 299.99939 * 18 16 14 22 22 H 1.09001 * 109.46520 * 297.68648 * 1 2 3 23 23 H 1.09001 * 109.47122 * 57.68312 * 1 2 3 24 24 H 1.09002 * 109.47273 * 177.68604 * 1 2 3 25 25 H 1.08999 * 110.99093 * 86.01271 * 4 2 1 26 26 H 1.09000 * 111.02641 * 322.20613 * 4 2 1 27 27 H 1.09001 * 110.70174 * 277.26989 * 5 4 2 28 28 H 1.09003 * 110.85654 * 154.10949 * 5 4 2 29 29 H 1.09001 * 109.46624 * 177.77020 * 8 6 5 30 30 H 1.09000 * 109.47255 * 297.76799 * 8 6 5 31 31 H 1.08999 * 109.46991 * 57.77320 * 8 6 5 32 32 H 1.08999 * 109.47380 * 50.00071 * 10 9 6 33 33 H 1.09001 * 109.47114 * 289.99520 * 10 9 6 34 34 H 1.09008 * 109.47150 * 305.00033 * 11 10 9 35 35 H 1.08998 * 109.47779 * 184.99685 * 11 10 9 36 36 H 1.09000 * 109.46355 * 60.00386 * 13 12 11 37 37 H 1.08999 * 109.46615 * 300.00542 * 13 12 11 38 38 H 0.97001 * 120.00651 * 359.71956 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9104 1.0215 0.0000 4 6 2.0692 -0.7763 -1.2273 5 6 3.4786 -1.1996 -0.7358 6 6 3.2535 -1.4808 0.7647 7 1 3.1066 -2.5487 0.9263 8 6 4.4584 -0.9934 1.5720 9 7 2.0447 -0.7409 1.1713 10 6 2.3358 0.1716 2.2850 11 6 1.1375 1.0947 2.5146 12 8 0.0153 0.3208 2.9433 13 6 -1.1635 1.0913 3.1864 14 6 -2.2771 0.1788 3.6314 15 1 -2.1025 -0.8833 3.7194 16 6 -3.5194 0.6999 3.9253 17 7 -3.7338 1.9925 3.8120 18 14 -4.9001 -0.4313 4.4763 19 1 -4.4997 -1.1297 5.7241 20 1 -6.1250 0.3695 4.7290 21 1 -5.1732 -1.4327 3.4142 22 1 -0.3632 0.4775 0.9100 23 1 -0.3633 0.5494 -0.8685 24 1 -0.3634 -1.0268 -0.0415 25 1 2.1388 -0.1271 -2.1002 26 1 1.4517 -1.6488 -1.4404 27 1 4.1941 -0.3889 -0.8730 28 1 3.8148 -2.0998 -1.2505 29 1 4.2753 -1.1592 2.6337 30 1 5.3477 -1.5445 1.2662 31 1 4.6103 0.0707 1.3913 32 1 3.2145 0.7700 2.0443 33 1 2.5268 -0.4073 3.1886 34 1 0.8909 1.6081 1.5851 35 1 1.3861 1.8293 3.2805 36 1 -1.4574 1.6042 2.2707 37 1 -0.9627 1.8261 3.9661 38 1 -3.0170 2.5799 3.5256 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590162380.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:35 Heat of formation + Delta-G solvation = -68.460261 kcal Electronic energy + Delta-G solvation = -16687.531873 eV Core-core repulsion = 14142.994007 eV Total energy + Delta-G solvation = -2544.537866 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.91830 -38.53118 -35.29735 -33.92574 -33.36685 -29.71209 -28.95718 -28.04002 -25.05317 -24.71798 -23.36795 -21.77099 -20.04874 -19.18047 -17.51387 -17.49466 -17.08985 -16.31006 -15.69729 -15.38341 -15.07814 -14.63476 -14.21853 -14.05796 -13.78563 -13.44593 -13.35682 -13.19693 -12.88978 -12.60127 -12.48481 -12.29577 -12.09818 -11.91598 -11.75282 -11.59522 -11.56372 -11.40204 -10.83010 -10.82428 -10.29906 -9.10321 -8.82226 -6.52320 1.52086 1.61143 1.82348 2.49697 2.90891 3.04380 3.13036 3.65050 3.75259 3.96400 4.09765 4.13957 4.23297 4.33084 4.40972 4.45378 4.51124 4.53853 4.60189 4.74504 4.77846 4.80962 4.88380 4.91941 4.96271 5.00596 5.13294 5.19590 5.27962 5.42936 5.53343 5.70673 5.93744 6.18700 6.23556 6.35411 6.72117 7.28103 8.58638 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.041719 B = 0.006020 C = 0.005816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.991130 B = 4649.750921 C = 4813.051068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.072 3.928 3 H 0.051 0.949 4 C -0.121 4.121 5 C -0.127 4.127 6 C 0.061 3.939 7 H 0.076 0.924 8 C -0.164 4.164 9 N -0.537 5.537 10 C 0.063 3.937 11 C 0.044 3.956 12 O -0.381 6.381 13 C 0.199 3.801 14 C -0.618 4.618 15 H 0.050 0.950 16 C -0.028 4.028 17 N -0.929 5.929 18 Si 1.126 2.874 19 H -0.268 1.268 20 H -0.275 1.275 21 H -0.269 1.269 22 H 0.050 0.950 23 H 0.058 0.942 24 H 0.043 0.957 25 H 0.088 0.912 26 H 0.068 0.932 27 H 0.079 0.921 28 H 0.089 0.911 29 H 0.056 0.944 30 H 0.078 0.922 31 H 0.061 0.939 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.045 0.955 35 H 0.043 0.957 36 H -0.019 1.019 37 H -0.025 1.025 38 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.987 -4.654 -9.005 18.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.036 4.036 3 H 0.069 0.931 4 C -0.159 4.159 5 C -0.166 4.166 6 C -0.046 4.046 7 H 0.094 0.906 8 C -0.221 4.221 9 N -0.263 5.263 10 C -0.065 4.065 11 C -0.033 4.033 12 O -0.300 6.300 13 C 0.124 3.876 14 C -0.655 4.655 15 H 0.068 0.932 16 C -0.226 4.226 17 N -0.565 5.565 18 Si 0.945 3.055 19 H -0.193 1.193 20 H -0.200 1.200 21 H -0.194 1.194 22 H 0.069 0.931 23 H 0.077 0.923 24 H 0.062 0.938 25 H 0.106 0.894 26 H 0.087 0.913 27 H 0.097 0.903 28 H 0.108 0.892 29 H 0.075 0.925 30 H 0.097 0.903 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.063 0.937 35 H 0.061 0.939 36 H -0.002 1.002 37 H -0.007 1.007 38 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 14.063 -5.223 -8.335 17.162 hybrid contribution 2.008 1.292 -0.559 2.452 sum 16.072 -3.931 -8.894 18.784 Atomic orbital electron populations 1.21963 0.95587 1.01443 1.01470 1.22499 0.94842 0.95982 0.90296 0.93071 1.22736 0.96462 1.00138 0.96560 1.22840 0.96664 1.02688 0.94373 1.22529 0.88238 0.98738 0.95100 0.90592 1.22295 0.97957 1.01591 1.00304 1.63590 1.29411 1.26676 1.06634 1.22335 0.94405 0.94321 0.95442 1.22853 0.87948 0.94462 0.98009 1.87980 1.19789 1.35012 1.87230 1.19870 0.83932 0.91617 0.92189 1.22225 0.97608 0.95709 1.49996 0.93186 1.27561 1.02203 0.98997 0.93805 1.70927 1.35792 1.04315 1.45479 0.82843 0.72285 0.73029 0.77314 1.19275 1.19989 1.19373 0.93145 0.92298 0.93820 0.89367 0.91286 0.90276 0.89235 0.92527 0.90264 0.92019 0.90390 0.90705 0.93708 0.93886 1.00150 1.00708 0.93646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.33 8.99 71.98 0.65 -4.68 16 2 C 0.07 2.10 2.37 45.39 0.11 2.21 16 3 H 0.05 1.44 7.06 -2.39 -0.02 1.42 16 4 C -0.12 -2.67 6.49 31.98 0.21 -2.46 16 5 C -0.13 -2.32 6.47 31.78 0.21 -2.11 16 6 C 0.06 1.41 4.02 45.26 0.18 1.59 16 7 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 8 C -0.16 -3.00 7.79 71.98 0.56 -2.44 16 9 N -0.54 -16.62 4.93 -835.82 -4.12 -20.74 16 10 C 0.06 1.93 4.29 86.30 0.37 2.30 16 11 C 0.04 1.71 5.16 71.98 0.37 2.08 16 12 O -0.38 -19.29 8.90 -148.98 -1.33 -20.61 16 13 C 0.20 11.41 4.50 71.23 0.32 11.73 16 14 C -0.62 -38.23 9.43 25.60 0.24 -37.99 16 15 H 0.05 3.13 7.81 -2.91 -0.02 3.11 16 16 C -0.03 -1.70 5.46 84.66 0.46 -1.24 16 17 N -0.93 -58.45 13.65 21.45 0.29 -58.15 16 18 Si 1.13 51.72 29.90 68.60 2.05 53.77 16 19 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 20 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 21 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 22 H 0.05 2.22 3.16 -2.39 -0.01 2.21 16 23 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 24 H 0.04 1.66 8.13 -2.39 -0.02 1.64 16 25 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.07 1.62 8.05 -2.39 -0.02 1.60 16 27 H 0.08 1.24 7.84 -2.39 -0.02 1.22 16 28 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.06 1.14 6.87 -2.39 -0.02 1.12 16 30 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.06 1.07 6.56 -2.39 -0.02 1.06 16 32 H 0.08 1.91 5.85 -2.39 -0.01 1.90 16 33 H 0.07 2.39 7.33 -2.39 -0.02 2.37 16 34 H 0.04 1.70 5.23 -2.38 -0.01 1.69 16 35 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 36 H -0.02 -1.12 7.33 -2.39 -0.02 -1.14 16 37 H -0.02 -1.46 8.01 -2.39 -0.02 -1.48 16 38 H 0.25 16.18 7.22 -92.71 -0.67 15.51 16 Total: -1.00 -70.06 288.97 1.69 -68.37 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: 1.12 Total: 8.36 kcal Atomic # 6 Polarization: -34.67 SS G_CDS: 3.68 Total: -31.00 kcal Atomic # 7 Polarization: -75.06 SS G_CDS: -3.83 Total: -78.89 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: -1.33 Total: -20.61 kcal Atomic # 14 Polarization: 51.72 SS G_CDS: 2.05 Total: 53.77 kcal Total: -70.06 1.69 -68.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590162380.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.090 kcal (2) G-P(sol) polarization free energy of solvation -70.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds