Wall clock time and date at job start Sun Mar 29 2020 22:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.52999 * 109.47317 * 120.00367 * 2 1 3 5 5 C 1.50706 * 109.46573 * 299.99925 * 4 2 1 6 6 H 1.07995 * 120.00167 * 359.72054 * 5 4 2 7 7 C 1.37879 * 119.99394 * 179.97438 * 5 4 2 8 8 N 1.31514 * 120.00338 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99424 * 180.02562 * 7 5 4 10 10 H 1.48490 * 109.47405 * 60.00219 * 9 7 5 11 11 H 1.48503 * 109.46845 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47399 * 299.99813 * 9 7 5 13 13 C 1.53006 * 109.46943 * 240.00224 * 2 1 3 14 14 N 1.46896 * 109.47501 * 60.00213 * 13 2 1 15 15 C 1.46895 * 111.00306 * 179.97438 * 14 13 2 16 16 H 1.08998 * 112.84882 * 23.80134 * 15 14 13 17 17 C 1.53778 * 113.61739 * 154.99775 * 15 14 13 18 18 C 1.53782 * 87.08017 * 139.97971 * 17 15 14 19 19 H 1.08997 * 113.61088 * 89.20711 * 18 17 15 20 20 O 1.42900 * 113.61183 * 220.01782 * 18 17 15 21 21 C 1.53776 * 87.08305 * 334.56879 * 18 17 15 22 22 H 1.09002 * 109.47153 * 299.99992 * 1 2 3 23 23 H 1.09001 * 109.46832 * 59.99801 * 1 2 3 24 24 H 1.08992 * 109.47303 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47140 * 179.97438 * 3 2 1 26 26 H 1.09001 * 109.47375 * 299.99867 * 3 2 1 27 27 H 1.09002 * 109.47497 * 60.00225 * 3 2 1 28 28 H 1.09000 * 109.47486 * 179.97438 * 4 2 1 29 29 H 1.09001 * 109.47362 * 59.99268 * 4 2 1 30 30 H 0.96996 * 119.99730 * 179.97438 * 8 7 5 31 31 H 1.09000 * 109.46866 * 180.02562 * 13 2 1 32 32 H 1.08996 * 109.47261 * 299.99767 * 13 2 1 33 33 H 1.00907 * 110.99811 * 303.95634 * 14 13 2 34 34 H 1.08996 * 113.61577 * 254.53317 * 17 15 14 35 35 H 1.09009 * 113.61160 * 25.35220 * 17 15 14 36 36 H 0.96701 * 113.99719 * 180.02562 * 20 18 17 37 37 H 1.08999 * 113.61421 * 270.88443 * 21 18 17 38 38 H 1.08998 * 113.61533 * 139.97996 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5376 -0.0109 2.4797 6 1 0.9205 0.8698 2.3806 7 6 1.8703 -0.4823 3.7319 8 7 2.6264 -1.5516 3.8525 9 14 1.2471 0.3979 5.2571 10 1 -0.2378 0.3978 5.2566 11 1 1.7422 -0.3021 6.4696 12 1 1.7420 1.7980 5.2577 13 6 2.0399 -0.7212 -1.2493 14 7 1.5504 -0.0287 -2.4487 15 6 2.0218 -0.6945 -3.6704 16 1 2.2681 -1.7444 -3.5121 17 6 1.1202 -0.4506 -4.8920 18 6 2.4099 -0.3259 -5.7203 19 1 2.7625 -1.2747 -6.1246 20 8 2.3618 0.7117 -6.7017 21 6 3.1130 0.0903 -4.4176 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 3.1300 1.4424 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9564 0.8900 28 1 3.1300 -0.7217 1.2490 29 1 1.6766 -1.7490 1.2492 30 1 2.8608 -1.8830 4.7335 31 1 3.1300 -0.7216 -1.2491 32 1 1.6767 -1.7489 -1.2494 33 1 0.5438 0.0414 -2.4402 34 1 0.5091 -1.3117 -5.1624 35 1 0.5462 0.4742 -4.8334 36 1 3.1699 0.7948 -7.2261 37 1 3.0849 1.1636 -4.2300 38 1 4.1107 -0.3341 -4.3051 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590663587.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:26 Heat of formation + Delta-G solvation = -48.284226 kcal Electronic energy + Delta-G solvation = -16107.213988 eV Core-core repulsion = 13563.551020 eV Total energy + Delta-G solvation = -2543.662968 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.45295 -37.26138 -35.26771 -32.80789 -31.42044 -26.94338 -26.33308 -25.84125 -25.35574 -23.29356 -21.92501 -19.65755 -17.84808 -17.68027 -16.21638 -15.54789 -15.23859 -14.85245 -14.43854 -13.82704 -13.61166 -13.16564 -12.65718 -12.42933 -12.13100 -11.99285 -11.90702 -11.29954 -11.19937 -10.91229 -10.85119 -10.75804 -10.60606 -10.46262 -10.19534 -10.11422 -9.87205 -9.66176 -8.98732 -8.80766 -8.29868 -8.07818 -5.94601 -3.94719 3.35994 3.40462 3.42868 4.01654 4.44439 4.49994 4.56979 4.79569 4.81513 4.88219 5.35677 5.41138 5.63817 5.71405 5.75948 5.81383 5.90897 6.00300 6.11597 6.19697 6.31700 6.38851 6.54079 6.68986 6.82169 6.85448 7.23282 7.26954 7.28773 7.45353 7.50332 7.69057 7.73199 7.87666 8.05739 8.50284 9.10473 9.67977 11.17089 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.066163 B = 0.004764 C = 0.004703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.094469 B = 5876.138829 C = 5952.602605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.059 4.059 3 C -0.116 4.116 4 C 0.034 3.966 5 C -0.507 4.507 6 H 0.058 0.942 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.888 3.112 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.277 1.277 13 C 0.069 3.931 14 N -0.672 5.672 15 C 0.061 3.939 16 H 0.071 0.929 17 C -0.133 4.133 18 C 0.074 3.926 19 H 0.078 0.922 20 O -0.561 6.561 21 C -0.153 4.153 22 H 0.064 0.936 23 H 0.033 0.967 24 H 0.040 0.960 25 H 0.039 0.961 26 H 0.042 0.958 27 H 0.054 0.946 28 H 0.014 0.986 29 H 0.012 0.988 30 H 0.259 0.741 31 H 0.065 0.935 32 H 0.023 0.977 33 H 0.340 0.660 34 H 0.069 0.931 35 H 0.096 0.904 36 H 0.375 0.625 37 H 0.097 0.903 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.650 1.405 -16.762 16.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.059 4.059 3 C -0.173 4.173 4 C -0.004 4.004 5 C -0.546 4.546 6 H 0.077 0.923 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.716 3.284 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.059 4.059 14 N -0.304 5.304 15 C -0.050 4.050 16 H 0.089 0.911 17 C -0.171 4.171 18 C 0.014 3.986 19 H 0.096 0.904 20 O -0.366 6.366 21 C -0.192 4.192 22 H 0.083 0.917 23 H 0.052 0.948 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.061 0.939 27 H 0.073 0.927 28 H 0.033 0.967 29 H 0.031 0.969 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.041 0.959 33 H 0.160 0.840 34 H 0.088 0.912 35 H 0.114 0.886 36 H 0.222 0.778 37 H 0.115 0.885 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.671 1.827 -16.364 16.479 hybrid contribution -0.188 -0.616 0.783 1.013 sum -0.858 1.211 -15.581 15.652 Atomic orbital electron populations 1.21770 0.96099 1.00356 1.00433 1.20635 0.94720 0.96151 0.94440 1.21596 0.99755 0.95810 1.00151 1.19120 0.96081 0.94960 0.90193 1.21210 1.30964 1.11754 0.90635 0.92341 1.25013 0.95388 0.95127 0.99035 1.69956 1.37251 1.23239 1.23377 0.86724 0.79151 0.79834 0.82681 1.20353 1.21448 1.20308 1.22168 0.99768 0.94594 0.89416 1.60660 1.16212 1.52822 1.00714 1.22717 0.96638 0.96347 0.89313 0.91077 1.23338 0.96294 1.02797 0.94648 1.23217 0.98169 0.90174 0.87013 0.90405 1.86530 1.42330 1.55747 1.51962 1.23758 0.97951 1.02452 0.95048 0.91703 0.94795 0.94110 0.94213 0.93888 0.92725 0.96721 0.96947 0.93124 0.91630 0.95868 0.83967 0.91247 0.88591 0.77798 0.88487 0.91849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.43 7.89 37.16 0.29 -2.13 16 2 C -0.06 -1.19 0.60 -154.51 -0.09 -1.28 16 3 C -0.12 -2.29 8.06 37.16 0.30 -1.99 16 4 C 0.03 0.86 4.04 -27.88 -0.11 0.75 16 5 C -0.51 -13.98 7.65 -34.44 -0.26 -14.24 16 6 H 0.06 1.57 5.68 -52.49 -0.30 1.27 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -27.01 13.29 55.43 0.74 -26.27 16 9 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 C 0.07 1.21 4.49 -3.82 -0.02 1.19 16 14 N -0.67 -9.90 5.77 -105.87 -0.61 -10.51 16 15 C 0.06 0.75 4.14 -66.90 -0.28 0.48 16 16 H 0.07 0.88 7.87 -51.93 -0.41 0.47 16 17 C -0.13 -1.46 7.48 -25.92 -0.19 -1.66 16 18 C 0.07 0.75 5.21 -25.92 -0.14 0.61 16 19 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 20 O -0.56 -5.87 13.67 -35.23 -0.48 -6.35 16 21 C -0.15 -1.78 7.71 -25.92 -0.20 -1.98 16 22 H 0.06 1.32 6.62 -51.93 -0.34 0.97 16 23 H 0.03 0.54 6.57 -51.93 -0.34 0.20 16 24 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.04 0.77 7.60 -51.93 -0.39 0.37 16 27 H 0.05 1.15 6.61 -51.93 -0.34 0.80 16 28 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 31 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.02 0.41 8.13 -51.93 -0.42 -0.01 16 33 H 0.34 4.82 6.59 -39.29 -0.26 4.57 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.10 1.15 8.14 -51.92 -0.42 0.72 16 36 H 0.38 2.23 9.12 45.56 0.42 2.64 16 37 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 300.85 15.07 4.53 4.53 Total: -1.00 -30.43 300.85 -7.40 -37.83 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -5.76 Total: 2.86 kcal Atomic # 6 Polarization: -17.98 SS G_CDS: -0.80 Total: -18.78 kcal Atomic # 7 Polarization: -36.90 SS G_CDS: 0.13 Total: -36.78 kcal Atomic # 8 Polarization: -5.87 SS G_CDS: -0.48 Total: -6.35 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.43 -7.40 -37.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590663587.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.456 kcal (2) G-P(sol) polarization free energy of solvation -30.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds