Wall clock time and date at job start Sun Mar 29 2020 22:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.52999 * 109.47317 * 120.00367 * 2 1 3 5 5 C 1.50706 * 109.46573 * 299.99925 * 4 2 1 6 6 H 1.07995 * 120.00167 * 359.72054 * 5 4 2 7 7 C 1.37879 * 119.99394 * 179.97438 * 5 4 2 8 8 N 1.31514 * 120.00338 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99424 * 180.02562 * 7 5 4 10 10 H 1.48490 * 109.47405 * 60.00219 * 9 7 5 11 11 H 1.48503 * 109.46845 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47399 * 299.99813 * 9 7 5 13 13 C 1.53006 * 109.46943 * 240.00224 * 2 1 3 14 14 N 1.46896 * 109.47501 * 60.00213 * 13 2 1 15 15 C 1.46895 * 111.00306 * 179.97438 * 14 13 2 16 16 H 1.08998 * 112.84882 * 23.80134 * 15 14 13 17 17 C 1.53778 * 113.61739 * 154.99775 * 15 14 13 18 18 C 1.53782 * 87.08017 * 139.97971 * 17 15 14 19 19 H 1.08997 * 113.61088 * 89.20711 * 18 17 15 20 20 O 1.42900 * 113.61183 * 220.01782 * 18 17 15 21 21 C 1.53776 * 87.08305 * 334.56879 * 18 17 15 22 22 H 1.09002 * 109.47153 * 299.99992 * 1 2 3 23 23 H 1.09001 * 109.46832 * 59.99801 * 1 2 3 24 24 H 1.08992 * 109.47303 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47140 * 179.97438 * 3 2 1 26 26 H 1.09001 * 109.47375 * 299.99867 * 3 2 1 27 27 H 1.09002 * 109.47497 * 60.00225 * 3 2 1 28 28 H 1.09000 * 109.47486 * 179.97438 * 4 2 1 29 29 H 1.09001 * 109.47362 * 59.99268 * 4 2 1 30 30 H 0.96996 * 119.99730 * 179.97438 * 8 7 5 31 31 H 1.09000 * 109.46866 * 180.02562 * 13 2 1 32 32 H 1.08996 * 109.47261 * 299.99767 * 13 2 1 33 33 H 1.00907 * 110.99811 * 303.95634 * 14 13 2 34 34 H 1.08996 * 113.61577 * 254.53317 * 17 15 14 35 35 H 1.09009 * 113.61160 * 25.35220 * 17 15 14 36 36 H 0.96701 * 113.99719 * 180.02562 * 20 18 17 37 37 H 1.08999 * 113.61421 * 270.88443 * 21 18 17 38 38 H 1.08998 * 113.61533 * 139.97996 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5376 -0.0109 2.4797 6 1 0.9205 0.8698 2.3806 7 6 1.8703 -0.4823 3.7319 8 7 2.6264 -1.5516 3.8525 9 14 1.2471 0.3979 5.2571 10 1 -0.2378 0.3978 5.2566 11 1 1.7422 -0.3021 6.4696 12 1 1.7420 1.7980 5.2577 13 6 2.0399 -0.7212 -1.2493 14 7 1.5504 -0.0287 -2.4487 15 6 2.0218 -0.6945 -3.6704 16 1 2.2681 -1.7444 -3.5121 17 6 1.1202 -0.4506 -4.8920 18 6 2.4099 -0.3259 -5.7203 19 1 2.7625 -1.2747 -6.1246 20 8 2.3618 0.7117 -6.7017 21 6 3.1130 0.0903 -4.4176 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 3.1300 1.4424 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9564 0.8900 28 1 3.1300 -0.7217 1.2490 29 1 1.6766 -1.7490 1.2492 30 1 2.8608 -1.8830 4.7335 31 1 3.1300 -0.7216 -1.2491 32 1 1.6767 -1.7489 -1.2494 33 1 0.5438 0.0414 -2.4402 34 1 0.5091 -1.3117 -5.1624 35 1 0.5462 0.4742 -4.8334 36 1 3.1699 0.7948 -7.2261 37 1 3.0849 1.1636 -4.2300 38 1 4.1107 -0.3341 -4.3051 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590663587.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:25 Heat of formation + Delta-G solvation = -70.041750 kcal Electronic energy + Delta-G solvation = -16108.157465 eV Core-core repulsion = 13563.551020 eV Total energy + Delta-G solvation = -2544.606445 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.40757 -38.75129 -36.27363 -34.68739 -32.90937 -28.95240 -27.90646 -27.01705 -26.54582 -24.86601 -23.31540 -20.60939 -19.40867 -18.56756 -18.32791 -16.68888 -16.47482 -16.21670 -15.93793 -15.26956 -14.80128 -14.76303 -14.26129 -13.88867 -13.54176 -13.33165 -13.18789 -12.83155 -12.70504 -12.57953 -12.28351 -12.18319 -12.13513 -12.06813 -11.88213 -11.40001 -11.35455 -10.87695 -10.80974 -10.57253 -10.49766 -9.28302 -8.13736 -6.20906 1.41197 1.43489 1.50778 2.44116 3.14659 3.20068 3.51684 3.66758 3.87383 3.95723 4.02829 4.16765 4.24651 4.38987 4.51349 4.75289 4.81017 4.83878 4.90244 4.95531 5.02866 5.07745 5.19577 5.21393 5.24247 5.36512 5.51555 5.53486 5.58179 5.65937 5.87158 5.92828 6.18192 6.37985 6.53887 6.93930 6.95464 7.46436 8.98472 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.066163 B = 0.004764 C = 0.004703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.094469 B = 5876.138829 C = 5952.602605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.056 4.056 3 C -0.106 4.106 4 C 0.040 3.960 5 C -0.516 4.516 6 H 0.065 0.935 7 C -0.003 4.003 8 N -0.938 5.938 9 Si 0.956 3.044 10 H -0.267 1.267 11 H -0.287 1.287 12 H -0.269 1.269 13 C 0.083 3.917 14 N -0.671 5.671 15 C 0.053 3.947 16 H 0.075 0.925 17 C -0.130 4.130 18 C 0.084 3.916 19 H 0.102 0.898 20 O -0.578 6.578 21 C -0.155 4.155 22 H 0.046 0.954 23 H 0.067 0.933 24 H 0.038 0.962 25 H 0.029 0.971 26 H 0.066 0.934 27 H 0.038 0.962 28 H -0.017 1.017 29 H -0.015 1.015 30 H 0.260 0.740 31 H 0.054 0.946 32 H 0.020 0.980 33 H 0.345 0.655 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.394 0.606 37 H 0.079 0.921 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.531 2.159 -18.056 18.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.057 4.057 3 C -0.164 4.164 4 C 0.003 3.997 5 C -0.554 4.554 6 H 0.084 0.916 7 C -0.200 4.200 8 N -0.579 5.579 9 Si 0.781 3.219 10 H -0.192 1.192 11 H -0.213 1.213 12 H -0.194 1.194 13 C -0.046 4.046 14 N -0.304 5.304 15 C -0.057 4.057 16 H 0.093 0.907 17 C -0.168 4.168 18 C 0.025 3.975 19 H 0.120 0.880 20 O -0.386 6.386 21 C -0.193 4.193 22 H 0.066 0.934 23 H 0.085 0.915 24 H 0.057 0.943 25 H 0.048 0.952 26 H 0.084 0.916 27 H 0.057 0.943 28 H 0.002 0.998 29 H 0.003 0.997 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.038 0.962 33 H 0.166 0.834 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.244 0.756 37 H 0.098 0.902 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.552 2.597 -17.687 17.944 hybrid contribution 0.126 -0.856 1.123 1.418 sum -1.426 1.741 -16.564 16.716 Atomic orbital electron populations 1.21683 0.94628 1.00475 1.01185 1.20509 0.95864 0.96033 0.93281 1.21496 0.99051 0.95382 1.00435 1.19002 0.94007 0.94020 0.92702 1.21597 1.30511 1.11816 0.91495 0.91647 1.25916 0.95655 0.95897 1.02554 1.70101 1.38775 1.24955 1.24105 0.85633 0.78973 0.78762 0.78495 1.19228 1.21300 1.19393 1.21854 0.98980 0.94235 0.89564 1.60599 1.16551 1.52750 1.00461 1.22837 0.97735 0.96503 0.88659 0.90708 1.23296 0.96654 1.02940 0.93879 1.23181 0.96937 0.90971 0.86430 0.88022 1.86480 1.43976 1.55956 1.52176 1.23731 0.98189 1.01257 0.96156 0.93444 0.91456 0.94332 0.95218 0.91555 0.94272 0.99849 0.99706 0.93147 0.92762 0.96222 0.83437 0.89740 0.89555 0.75569 0.90190 0.91318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.45 7.89 71.98 0.57 -3.89 16 2 C -0.06 -2.27 0.60 -52.18 -0.03 -2.30 16 3 C -0.11 -4.14 8.06 71.98 0.58 -3.56 16 4 C 0.04 2.11 4.04 29.85 0.12 2.23 16 5 C -0.52 -28.83 7.65 25.60 0.20 -28.64 16 6 H 0.07 3.50 5.68 -2.91 -0.02 3.48 16 7 C 0.00 -0.20 5.46 84.66 0.46 0.26 16 8 N -0.94 -57.70 13.29 21.45 0.28 -57.42 16 9 Si 0.96 44.67 29.54 68.60 2.03 46.70 16 10 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 11 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 12 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 13 C 0.08 2.87 4.49 86.31 0.39 3.26 16 14 N -0.67 -18.68 5.77 -488.87 -2.82 -21.50 16 15 C 0.05 1.21 4.14 45.44 0.19 1.40 16 16 H 0.08 1.70 7.87 -2.39 -0.02 1.68 16 17 C -0.13 -2.53 7.48 31.12 0.23 -2.30 16 18 C 0.08 1.48 5.21 31.12 0.16 1.64 16 19 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 20 O -0.58 -10.63 13.67 -148.98 -2.04 -12.66 16 21 C -0.15 -3.31 7.71 31.12 0.24 -3.07 16 22 H 0.05 1.88 6.62 -2.39 -0.02 1.86 16 23 H 0.07 1.99 6.57 -2.39 -0.02 1.97 16 24 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.07 2.25 7.60 -2.39 -0.02 2.24 16 27 H 0.04 1.62 6.61 -2.39 -0.02 1.60 16 28 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 29 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 30 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 31 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.02 0.69 8.13 -2.39 -0.02 0.67 16 33 H 0.34 8.98 6.59 -89.69 -0.59 8.39 16 34 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.09 1.88 8.14 -2.38 -0.02 1.86 16 36 H 0.39 3.66 9.12 -74.06 -0.68 2.98 16 37 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.07 1.37 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -65.65 300.85 0.33 -65.32 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -0.23 Total: 14.52 kcal Atomic # 6 Polarization: -38.07 SS G_CDS: 3.11 Total: -34.96 kcal Atomic # 7 Polarization: -76.38 SS G_CDS: -2.54 Total: -78.92 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: -2.04 Total: -12.66 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -65.65 0.33 -65.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590663587.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.719 kcal (2) G-P(sol) polarization free energy of solvation -65.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds