Wall clock time and date at job start Sun Mar 29 2020 22:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.46807 * 2 1 4 4 N 1.46893 * 109.47497 * 120.00239 * 2 1 3 5 5 C 1.46904 * 110.99904 * 292.08937 * 4 2 1 6 6 C 1.52996 * 109.47048 * 162.54764 * 5 4 2 7 7 C 1.53007 * 109.47309 * 181.82071 * 6 5 4 8 8 C 1.50691 * 109.47456 * 179.97438 * 7 6 5 9 9 H 1.08002 * 120.00219 * 0.02562 * 8 7 6 10 10 C 1.37877 * 120.00013 * 180.02562 * 8 7 6 11 11 N 1.31519 * 120.00052 * 180.02562 * 10 8 7 12 12 Si 1.86798 * 119.99992 * 0.02562 * 10 8 7 13 13 H 1.48500 * 109.46790 * 90.00140 * 12 10 8 14 14 H 1.48501 * 109.46840 * 210.00235 * 12 10 8 15 15 H 1.48501 * 109.47276 * 329.99992 * 12 10 8 16 16 C 1.46905 * 111.00213 * 168.13718 * 4 2 1 17 17 C 1.54028 * 113.81596 * 295.96751 * 16 4 2 18 18 O 1.44445 * 85.42358 * 223.23835 * 17 16 4 19 19 C 1.44171 * 93.38110 * 24.08529 * 18 17 16 20 20 H 1.09001 * 109.47644 * 306.67779 * 1 2 3 21 21 H 1.09000 * 109.47564 * 66.68429 * 1 2 3 22 22 H 1.09004 * 109.46842 * 186.67685 * 1 2 3 23 23 H 1.09002 * 109.47029 * 240.00435 * 2 1 3 24 24 H 1.08998 * 109.46925 * 180.02562 * 3 2 1 25 25 H 1.09009 * 109.47038 * 300.00189 * 3 2 1 26 26 H 1.08993 * 109.47062 * 60.00184 * 3 2 1 27 27 H 1.08999 * 109.47101 * 42.55199 * 5 4 2 28 28 H 1.08999 * 109.47302 * 282.55045 * 5 4 2 29 29 H 1.09001 * 109.47803 * 301.82028 * 6 5 4 30 30 H 1.08998 * 109.47251 * 61.82387 * 6 5 4 31 31 H 1.09001 * 109.46653 * 300.00661 * 7 6 5 32 32 H 1.08998 * 109.46706 * 59.99982 * 7 6 5 33 33 H 0.96996 * 119.99972 * 179.97438 * 11 10 8 34 34 H 1.09004 * 112.99478 * 67.79002 * 16 4 2 35 35 H 1.09001 * 113.86217 * 337.33723 * 17 16 4 36 36 H 1.09000 * 113.86763 * 109.04731 * 17 16 4 37 37 H 1.09000 * 113.86590 * 221.76914 * 19 18 17 38 38 H 1.09005 * 113.98044 * 90.07882 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 1.7090 0.0739 2.4135 6 6 1.8263 -0.8382 3.6362 7 6 1.4587 -0.0519 4.8963 8 6 1.5736 -0.9504 6.1005 9 1 1.8788 -1.9793 5.9795 10 6 1.2891 -0.4590 7.3570 11 7 1.3900 -1.2430 8.4081 12 14 0.7606 1.3204 7.5663 13 1 -0.7183 1.4123 7.4671 14 1 1.1992 1.8138 8.8965 15 1 1.3806 2.1495 6.5017 16 6 3.4606 -0.9611 1.1007 17 6 3.8371 -1.9237 -0.0413 18 8 4.7195 -2.5383 0.9231 19 6 3.9532 -2.0691 2.0506 20 1 -0.3634 0.6138 0.8242 21 1 -0.3634 0.4067 -0.9437 22 1 -0.3633 -1.0207 0.1195 23 1 1.8933 -0.5138 -0.8900 24 1 3.1299 1.4426 -0.0005 25 1 1.6765 1.9564 -0.8900 26 1 1.6766 1.9563 0.8899 27 1 0.6932 0.4636 2.3471 28 1 2.4105 0.9025 2.5096 29 1 1.1480 -1.6842 3.5251 30 1 2.8502 -1.2023 3.7211 31 1 2.1370 0.7940 5.0074 32 1 0.4348 0.3121 4.8114 33 1 1.1902 -0.8972 9.2920 34 1 4.0657 -0.0549 1.1301 35 1 3.0186 -2.5675 -0.3632 36 1 4.3550 -1.4425 -0.8710 37 1 4.5630 -1.7029 2.8766 38 1 3.1698 -2.7561 2.3706 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590745705.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:11 Heat of formation + Delta-G solvation = -19.579466 kcal Electronic energy + Delta-G solvation = -16521.595855 eV Core-core repulsion = 13979.177619 eV Total energy + Delta-G solvation = -2542.418236 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.50356 -37.66876 -34.13827 -32.22661 -30.90050 -28.26660 -27.22075 -26.69783 -25.86332 -22.79230 -20.92533 -20.03867 -19.19420 -16.89406 -16.43656 -16.27995 -15.84246 -14.91874 -14.35621 -14.12801 -13.99912 -13.49914 -13.12661 -12.67764 -12.52329 -12.50165 -12.11747 -11.84213 -11.67973 -11.31195 -11.14656 -11.03462 -10.79430 -10.67997 -10.42310 -9.81845 -9.73447 -9.58543 -9.49821 -9.15920 -8.52379 -8.22996 -6.02747 -4.00409 3.30606 3.38028 3.41206 3.80504 3.93683 4.28834 4.45999 4.82820 5.02175 5.04928 5.20059 5.27719 5.31087 5.42966 5.54031 5.56364 5.61899 5.67977 5.74500 5.82401 5.89161 5.97535 6.05107 6.16547 6.19714 6.23266 6.30631 6.53848 6.59357 6.92868 7.20322 7.22566 7.35084 7.47485 7.81849 8.56456 9.02997 9.59999 11.10827 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.027891 B = 0.006953 C = 0.005951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.668214 B = 4026.269735 C = 4703.870456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.074 3.926 3 C -0.186 4.186 4 N -0.523 5.523 5 C 0.049 3.951 6 C -0.102 4.102 7 C -0.013 4.013 8 C -0.518 4.518 9 H 0.072 0.928 10 C 0.065 3.935 11 N -0.904 5.904 12 Si 0.879 3.121 13 H -0.277 1.277 14 H -0.288 1.288 15 H -0.267 1.267 16 C 0.012 3.988 17 C 0.045 3.955 18 O -0.389 6.389 19 C 0.051 3.949 20 H 0.057 0.943 21 H 0.055 0.945 22 H 0.065 0.935 23 H 0.077 0.923 24 H 0.052 0.948 25 H 0.057 0.943 26 H 0.062 0.938 27 H 0.073 0.927 28 H 0.032 0.968 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.012 0.988 32 H 0.010 0.990 33 H 0.262 0.738 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.093 0.907 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.191 3.820 -18.213 18.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.034 4.034 3 C -0.245 4.245 4 N -0.248 5.248 5 C -0.078 4.078 6 C -0.140 4.140 7 C -0.051 4.051 8 C -0.556 4.556 9 H 0.090 0.910 10 C -0.135 4.135 11 N -0.543 5.543 12 Si 0.707 3.293 13 H -0.203 1.203 14 H -0.214 1.214 15 H -0.191 1.191 16 C -0.097 4.097 17 C -0.032 4.032 18 O -0.307 6.307 19 C -0.025 4.025 20 H 0.076 0.924 21 H 0.074 0.926 22 H 0.084 0.916 23 H 0.095 0.905 24 H 0.071 0.929 25 H 0.076 0.924 26 H 0.081 0.919 27 H 0.091 0.909 28 H 0.050 0.950 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.030 0.970 32 H 0.028 0.972 33 H 0.072 0.928 34 H 0.091 0.909 35 H 0.105 0.895 36 H 0.101 0.899 37 H 0.111 0.889 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.179 3.198 -18.010 18.330 hybrid contribution -0.040 1.941 0.290 1.963 sum 1.139 5.139 -17.721 18.486 Atomic orbital electron populations 1.21839 0.94169 1.02777 1.01298 1.21671 0.96015 0.92332 0.93414 1.22496 1.01144 0.98338 1.02485 1.62672 1.12650 1.46983 1.02533 1.22387 1.00526 0.95367 0.89533 1.21609 1.01422 0.98389 0.92578 1.19549 0.95744 0.96161 0.93620 1.21144 1.45805 0.98732 0.89907 0.90987 1.25039 0.95051 0.97467 0.95992 1.69919 1.49814 1.35875 0.98726 0.86785 0.79189 0.85949 0.77376 1.20333 1.21441 1.19142 1.25030 0.89748 0.98312 0.96609 1.24033 0.92871 0.93338 0.92966 1.89708 1.45509 1.77817 1.17660 1.24234 0.94173 0.93838 0.90302 0.92400 0.92638 0.91606 0.90468 0.92931 0.92355 0.91937 0.90861 0.94997 0.92005 0.92501 0.96982 0.97198 0.92790 0.90921 0.89514 0.89901 0.88901 0.88567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.05 37.16 0.34 -1.18 16 2 C 0.07 0.82 2.83 -67.72 -0.19 0.63 16 3 C -0.19 -1.94 8.50 37.16 0.32 -1.62 16 4 N -0.52 -7.04 4.39 -226.61 -1.00 -8.04 16 5 C 0.05 0.77 3.58 -3.82 -0.01 0.75 16 6 C -0.10 -1.98 4.55 -26.73 -0.12 -2.10 16 7 C -0.01 -0.30 4.04 -27.88 -0.11 -0.42 16 8 C -0.52 -14.79 9.66 -34.44 -0.33 -15.12 16 9 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 10 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 11 N -0.90 -28.07 13.96 55.43 0.77 -27.30 16 12 Si 0.88 21.83 27.47 -169.99 -4.67 17.16 16 13 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 14 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 15 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 16 C 0.01 0.16 2.88 -66.64 -0.19 -0.04 16 17 C 0.05 0.53 7.87 37.64 0.30 0.83 16 18 O -0.39 -5.85 12.46 -35.23 -0.44 -6.29 16 19 C 0.05 0.75 6.49 37.64 0.24 0.99 16 20 H 0.06 0.66 6.61 -51.93 -0.34 0.32 16 21 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 22 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.08 0.77 7.12 -51.93 -0.37 0.40 16 24 H 0.05 0.55 7.02 -51.93 -0.36 0.18 16 25 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 26 H 0.06 0.72 6.70 -51.93 -0.35 0.37 16 27 H 0.07 1.14 6.12 -51.93 -0.32 0.82 16 28 H 0.03 0.50 7.21 -51.93 -0.37 0.13 16 29 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.06 1.09 5.09 -51.93 -0.26 0.82 16 31 H 0.01 0.28 7.20 -51.93 -0.37 -0.09 16 32 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16 33 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 34 H 0.07 0.95 7.23 -51.93 -0.38 0.58 16 35 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.09 1.38 7.63 -51.93 -0.40 0.98 16 38 H 0.10 1.48 7.62 -51.93 -0.40 1.09 16 LS Contribution 292.23 15.07 4.40 4.40 Total: -1.00 -30.58 292.23 -7.23 -37.81 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: -6.44 Total: -2.30 kcal Atomic # 6 Polarization: -15.58 SS G_CDS: 0.13 Total: -15.45 kcal Atomic # 7 Polarization: -35.11 SS G_CDS: -0.22 Total: -35.33 kcal Atomic # 8 Polarization: -5.85 SS G_CDS: -0.44 Total: -6.29 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.67 Total: 17.16 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.58 -7.23 -37.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590745705.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.232 kcal (2) G-P(sol) polarization free energy of solvation -30.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds