Wall clock time and date at job start Sun Mar 29 2020 22:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.46807 * 2 1 4 4 N 1.46893 * 109.47497 * 120.00239 * 2 1 3 5 5 C 1.46904 * 110.99904 * 292.08937 * 4 2 1 6 6 C 1.52996 * 109.47048 * 162.54764 * 5 4 2 7 7 C 1.53007 * 109.47309 * 181.82071 * 6 5 4 8 8 C 1.50691 * 109.47456 * 179.97438 * 7 6 5 9 9 H 1.08002 * 120.00219 * 0.02562 * 8 7 6 10 10 C 1.37877 * 120.00013 * 180.02562 * 8 7 6 11 11 N 1.31519 * 120.00052 * 180.02562 * 10 8 7 12 12 Si 1.86798 * 119.99992 * 0.02562 * 10 8 7 13 13 H 1.48500 * 109.46790 * 90.00140 * 12 10 8 14 14 H 1.48501 * 109.46840 * 210.00235 * 12 10 8 15 15 H 1.48501 * 109.47276 * 329.99992 * 12 10 8 16 16 C 1.46905 * 111.00213 * 168.13718 * 4 2 1 17 17 C 1.54028 * 113.81596 * 295.96751 * 16 4 2 18 18 O 1.44445 * 85.42358 * 223.23835 * 17 16 4 19 19 C 1.44171 * 93.38110 * 24.08529 * 18 17 16 20 20 H 1.09001 * 109.47644 * 306.67779 * 1 2 3 21 21 H 1.09000 * 109.47564 * 66.68429 * 1 2 3 22 22 H 1.09004 * 109.46842 * 186.67685 * 1 2 3 23 23 H 1.09002 * 109.47029 * 240.00435 * 2 1 3 24 24 H 1.08998 * 109.46925 * 180.02562 * 3 2 1 25 25 H 1.09009 * 109.47038 * 300.00189 * 3 2 1 26 26 H 1.08993 * 109.47062 * 60.00184 * 3 2 1 27 27 H 1.08999 * 109.47101 * 42.55199 * 5 4 2 28 28 H 1.08999 * 109.47302 * 282.55045 * 5 4 2 29 29 H 1.09001 * 109.47803 * 301.82028 * 6 5 4 30 30 H 1.08998 * 109.47251 * 61.82387 * 6 5 4 31 31 H 1.09001 * 109.46653 * 300.00661 * 7 6 5 32 32 H 1.08998 * 109.46706 * 59.99982 * 7 6 5 33 33 H 0.96996 * 119.99972 * 179.97438 * 11 10 8 34 34 H 1.09004 * 112.99478 * 67.79002 * 16 4 2 35 35 H 1.09001 * 113.86217 * 337.33723 * 17 16 4 36 36 H 1.09000 * 113.86763 * 109.04731 * 17 16 4 37 37 H 1.09000 * 113.86590 * 221.76914 * 19 18 17 38 38 H 1.09005 * 113.98044 * 90.07882 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 1.7090 0.0739 2.4135 6 6 1.8263 -0.8382 3.6362 7 6 1.4587 -0.0519 4.8963 8 6 1.5736 -0.9504 6.1005 9 1 1.8788 -1.9793 5.9795 10 6 1.2891 -0.4590 7.3570 11 7 1.3900 -1.2430 8.4081 12 14 0.7606 1.3204 7.5663 13 1 -0.7183 1.4123 7.4671 14 1 1.1992 1.8138 8.8965 15 1 1.3806 2.1495 6.5017 16 6 3.4606 -0.9611 1.1007 17 6 3.8371 -1.9237 -0.0413 18 8 4.7195 -2.5383 0.9231 19 6 3.9532 -2.0691 2.0506 20 1 -0.3634 0.6138 0.8242 21 1 -0.3634 0.4067 -0.9437 22 1 -0.3633 -1.0207 0.1195 23 1 1.8933 -0.5138 -0.8900 24 1 3.1299 1.4426 -0.0005 25 1 1.6765 1.9564 -0.8900 26 1 1.6766 1.9563 0.8899 27 1 0.6932 0.4636 2.3471 28 1 2.4105 0.9025 2.5096 29 1 1.1480 -1.6842 3.5251 30 1 2.8502 -1.2023 3.7211 31 1 2.1370 0.7940 5.0074 32 1 0.4348 0.3121 4.8114 33 1 1.1902 -0.8972 9.2920 34 1 4.0657 -0.0549 1.1301 35 1 3.0186 -2.5675 -0.3632 36 1 4.3550 -1.4425 -0.8710 37 1 4.5630 -1.7029 2.8766 38 1 3.1698 -2.7561 2.3706 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590745705.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:11 Heat of formation + Delta-G solvation = -40.863206 kcal Electronic energy + Delta-G solvation = -16522.518787 eV Core-core repulsion = 13979.177619 eV Total energy + Delta-G solvation = -2543.341168 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.58326 -38.73842 -35.90243 -34.01726 -32.22056 -29.70203 -28.02893 -27.93199 -27.19032 -24.38513 -22.17655 -21.55336 -20.23426 -18.89245 -17.54473 -17.52607 -16.96796 -16.28710 -15.95228 -15.44656 -15.24329 -14.74439 -14.51671 -14.06333 -13.86856 -13.58696 -13.54565 -12.98670 -12.93583 -12.73169 -12.56112 -12.13400 -12.04258 -11.86649 -11.77159 -11.58909 -11.34416 -11.23424 -11.13135 -10.75289 -10.66180 -9.28586 -8.28376 -6.32303 1.35464 1.37428 1.49301 2.36611 2.75516 2.88574 3.06971 3.23586 3.94214 4.03981 4.15586 4.22466 4.24245 4.41974 4.47951 4.51874 4.55963 4.70185 4.72428 4.77270 4.84967 4.94586 4.97956 5.02836 5.06702 5.10648 5.14695 5.21052 5.33347 5.44432 5.57210 5.62861 5.68227 6.10940 6.21552 6.32133 6.76373 7.32238 8.88663 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.027891 B = 0.006953 C = 0.005951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.668214 B = 4026.269735 C = 4703.870456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.073 3.927 3 C -0.182 4.182 4 N -0.530 5.530 5 C 0.062 3.938 6 C -0.094 4.094 7 C -0.009 4.009 8 C -0.531 4.531 9 H 0.030 0.970 10 C 0.001 3.999 11 N -0.953 5.953 12 Si 0.952 3.048 13 H -0.266 1.266 14 H -0.285 1.285 15 H -0.246 1.246 16 C 0.017 3.983 17 C 0.053 3.947 18 O -0.409 6.409 19 C 0.043 3.957 20 H 0.047 0.953 21 H 0.077 0.923 22 H 0.055 0.945 23 H 0.095 0.905 24 H 0.052 0.948 25 H 0.076 0.924 26 H 0.049 0.951 27 H 0.078 0.922 28 H 0.035 0.965 29 H 0.047 0.953 30 H 0.052 0.948 31 H 0.017 0.983 32 H 0.017 0.983 33 H 0.266 0.734 34 H 0.079 0.921 35 H 0.094 0.906 36 H 0.111 0.889 37 H 0.084 0.916 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.782 5.991 -20.503 21.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.035 4.035 3 C -0.241 4.241 4 N -0.255 5.255 5 C -0.065 4.065 6 C -0.132 4.132 7 C -0.047 4.047 8 C -0.569 4.569 9 H 0.048 0.952 10 C -0.195 4.195 11 N -0.594 5.594 12 Si 0.775 3.225 13 H -0.191 1.191 14 H -0.211 1.211 15 H -0.169 1.169 16 C -0.092 4.092 17 C -0.024 4.024 18 O -0.328 6.328 19 C -0.033 4.033 20 H 0.066 0.934 21 H 0.096 0.904 22 H 0.075 0.925 23 H 0.113 0.887 24 H 0.071 0.929 25 H 0.095 0.905 26 H 0.069 0.931 27 H 0.097 0.903 28 H 0.054 0.946 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.035 0.965 32 H 0.036 0.964 33 H 0.074 0.926 34 H 0.096 0.904 35 H 0.112 0.888 36 H 0.129 0.871 37 H 0.102 0.898 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.771 5.367 -20.336 21.046 hybrid contribution 0.112 1.137 0.976 1.502 sum 0.883 6.503 -19.359 20.442 Atomic orbital electron populations 1.21837 0.93814 1.02148 1.02119 1.21804 0.96277 0.92844 0.92558 1.22450 1.01114 0.97661 1.02834 1.62578 1.12966 1.47266 1.02720 1.22103 1.01037 0.94419 0.88964 1.21442 1.00706 0.98168 0.92874 1.19489 0.96227 0.95676 0.93326 1.21517 1.45270 0.97865 0.92239 0.95185 1.26056 0.95098 1.02850 0.95484 1.70082 1.51393 1.38485 0.99463 0.85633 0.79322 0.79605 0.77929 1.19097 1.21068 1.16916 1.24977 0.89572 0.98128 0.96511 1.24217 0.92768 0.92604 0.92787 1.89686 1.46358 1.78343 1.18396 1.24158 0.93917 0.94632 0.90616 0.93432 0.90391 0.92543 0.88686 0.92911 0.90470 0.93149 0.90321 0.94644 0.93423 0.92897 0.96471 0.96419 0.92568 0.90366 0.88806 0.87070 0.89792 0.89995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 9.05 71.98 0.65 -1.95 16 2 C 0.07 1.38 2.83 44.92 0.13 1.51 16 3 C -0.18 -3.18 8.50 71.98 0.61 -2.57 16 4 N -0.53 -13.26 4.39 -881.90 -3.87 -17.13 16 5 C 0.06 1.86 3.58 86.30 0.31 2.17 16 6 C -0.09 -3.64 4.55 30.60 0.14 -3.50 16 7 C -0.01 -0.43 4.04 29.85 0.12 -0.31 16 8 C -0.53 -31.12 9.66 25.60 0.25 -30.87 16 9 H 0.03 1.94 7.99 -2.91 -0.02 1.92 16 10 C 0.00 0.09 5.47 84.65 0.46 0.55 16 11 N -0.95 -60.79 13.96 21.45 0.30 -60.49 16 12 Si 0.95 44.59 27.47 68.60 1.88 46.47 16 13 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 14 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 15 H -0.25 -10.60 6.54 99.48 0.65 -9.95 16 16 C 0.02 0.42 2.88 45.61 0.13 0.55 16 17 C 0.05 1.12 7.87 72.29 0.57 1.69 16 18 O -0.41 -11.96 12.46 -148.98 -1.86 -13.81 16 19 C 0.04 1.29 6.49 72.29 0.47 1.75 16 20 H 0.05 0.97 6.61 -2.39 -0.02 0.95 16 21 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 22 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 23 H 0.10 1.51 7.12 -2.39 -0.02 1.49 16 24 H 0.05 0.92 7.02 -2.39 -0.02 0.91 16 25 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 26 H 0.05 1.01 6.70 -2.39 -0.02 0.99 16 27 H 0.08 2.28 6.12 -2.39 -0.01 2.27 16 28 H 0.04 1.04 7.21 -2.39 -0.02 1.03 16 29 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.05 2.07 5.09 -2.39 -0.01 2.06 16 31 H 0.02 0.78 7.20 -2.39 -0.02 0.76 16 32 H 0.02 0.80 7.57 -2.39 -0.02 0.78 16 33 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 34 H 0.08 1.86 7.23 -2.39 -0.02 1.85 16 35 H 0.09 1.86 8.14 -2.39 -0.02 1.85 16 36 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.08 2.57 7.63 -2.39 -0.02 2.55 16 38 H 0.08 2.62 7.62 -2.38 -0.02 2.60 16 Total: -1.00 -66.88 292.23 1.25 -65.63 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: 0.96 Total: 10.33 kcal Atomic # 6 Polarization: -34.83 SS G_CDS: 3.84 Total: -30.99 kcal Atomic # 7 Polarization: -74.05 SS G_CDS: -3.57 Total: -77.62 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: -1.86 Total: -13.81 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 1.88 Total: 46.47 kcal Total: -66.88 1.25 -65.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590745705.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.763 kcal (2) G-P(sol) polarization free energy of solvation -66.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds