Wall clock time and date at job start Sun Mar 29 2020 22:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47105 * 2 1 4 4 O 1.42900 * 109.47221 * 119.99357 * 2 1 3 5 5 C 1.42900 * 114.00244 * 150.00298 * 4 2 1 6 6 H 1.09006 * 112.84977 * 341.19954 * 5 4 2 7 7 C 1.53779 * 113.69141 * 112.46673 * 5 4 2 8 8 C 1.53784 * 87.08045 * 139.99528 * 7 5 4 9 9 H 1.09004 * 113.61451 * 220.02152 * 8 7 5 10 10 N 1.46496 * 113.61524 * 89.11591 * 8 7 5 11 11 C 1.36938 * 119.99833 * 107.50104 * 10 8 7 12 12 H 1.08001 * 120.00007 * 0.02562 * 11 10 8 13 13 C 1.38814 * 120.00036 * 179.97438 * 11 10 8 14 14 N 1.31623 * 119.99771 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 120.00257 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.46984 * 90.00165 * 15 13 11 17 17 H 1.48493 * 109.47102 * 210.00263 * 15 13 11 18 18 H 1.48498 * 109.46647 * 330.00241 * 15 13 11 19 19 C 1.53779 * 113.61410 * 210.00574 * 5 4 2 20 20 C 1.53000 * 113.61731 * 105.38882 * 19 5 4 21 21 C 1.52998 * 113.69187 * 334.49120 * 19 5 4 22 22 H 1.09002 * 109.47897 * 299.99957 * 1 2 3 23 23 H 1.09006 * 109.47251 * 60.00343 * 1 2 3 24 24 H 1.09004 * 109.46995 * 180.02562 * 1 2 3 25 25 H 1.08993 * 109.47961 * 239.99839 * 2 1 3 26 26 H 1.08999 * 109.47269 * 179.97438 * 3 2 1 27 27 H 1.09006 * 109.46786 * 299.99941 * 3 2 1 28 28 H 1.09005 * 109.47426 * 59.99401 * 3 2 1 29 29 H 1.09002 * 113.61557 * 25.44640 * 7 5 4 30 30 H 1.09004 * 113.61501 * 254.54060 * 7 5 4 31 31 H 0.96998 * 120.00377 * 287.50245 * 10 8 7 32 32 H 0.96998 * 120.00014 * 180.02562 * 14 13 11 33 33 H 1.08994 * 109.47401 * 157.49461 * 20 19 5 34 34 H 1.09006 * 109.46633 * 277.49501 * 20 19 5 35 35 H 1.09005 * 109.47442 * 37.48787 * 20 19 5 36 36 H 1.08994 * 109.46980 * 322.46514 * 21 19 5 37 37 H 1.09003 * 109.46911 * 82.46699 * 21 19 5 38 38 H 1.09005 * 109.46827 * 202.46552 * 21 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6735 1.1668 5 6 3.2660 -1.3243 0.9888 6 1 3.5128 -1.4891 -0.0601 7 6 4.4092 -0.6897 1.7983 8 6 4.8966 -2.1203 2.0825 9 1 5.2528 -2.2657 3.1024 10 7 5.8274 -2.6343 1.0747 11 6 7.1567 -2.7677 1.3753 12 1 7.5189 -2.4944 2.3554 13 6 8.0387 -3.2552 0.4206 14 7 7.5972 -3.5887 -0.7738 15 14 9.8519 -3.4379 0.8307 16 1 10.0990 -4.7912 1.3900 17 1 10.6590 -3.2570 -0.4025 18 1 10.2390 -2.4107 1.8308 19 6 3.4432 -2.5742 1.8670 20 6 3.3199 -3.8889 1.0942 21 6 2.5991 -2.5537 3.1430 22 1 -0.3635 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 3.1299 1.4426 0.0005 27 1 1.6766 1.9563 -0.8901 28 1 1.6765 1.9565 0.8900 29 1 4.0716 -0.1586 2.6882 30 1 5.1012 -0.1051 1.1921 31 1 5.5022 -2.8800 0.1946 32 1 8.2134 -3.9296 -1.4408 33 1 3.8303 -4.6813 1.6414 34 1 2.2667 -4.1460 0.9805 35 1 3.7746 -3.7758 0.1100 36 1 2.5676 -1.5396 3.5414 37 1 1.5865 -2.8858 2.9141 38 1 3.0421 -3.2210 3.8824 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590756666.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:26 Heat of formation + Delta-G solvation = -28.926291 kcal Electronic energy + Delta-G solvation = -16694.804885 eV Core-core repulsion = 14151.981341 eV Total energy + Delta-G solvation = -2542.823545 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.66826 -36.94072 -33.49544 -31.99505 -30.48955 -29.21730 -27.13111 -26.83831 -24.31388 -22.67028 -21.50817 -21.09364 -17.91941 -17.11152 -16.27736 -14.95470 -14.86948 -14.57114 -13.98752 -13.71643 -13.32078 -12.88591 -12.75232 -12.47780 -12.19365 -11.95853 -11.76516 -11.66072 -11.55131 -11.42394 -11.00663 -10.87670 -10.83897 -10.58682 -10.37958 -10.16060 -10.06026 -9.60497 -9.33950 -8.85604 -8.78428 -6.97094 -5.79454 -3.07889 3.42854 3.48226 3.49764 4.03213 4.56970 4.99638 5.06753 5.16608 5.26728 5.35099 5.38715 5.49660 5.62860 5.73833 5.76099 5.84757 5.89468 5.94206 5.95302 6.05190 6.20222 6.22889 6.28255 6.32606 6.39470 6.46474 6.53912 6.56148 6.72054 6.90634 7.06320 7.10468 7.69623 7.76770 8.40015 9.50624 10.08141 10.42676 11.43204 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.035862 B = 0.006689 C = 0.006298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.586937 B = 4184.737948 C = 4444.579619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.079 3.921 3 C -0.173 4.173 4 O -0.369 6.369 5 C 0.077 3.923 6 H 0.081 0.919 7 C -0.186 4.186 8 C 0.176 3.824 9 H 0.067 0.933 10 N -0.704 5.704 11 C -0.240 4.240 12 H 0.072 0.928 13 C -0.013 4.013 14 N -0.934 5.934 15 Si 0.908 3.092 16 H -0.289 1.289 17 H -0.292 1.292 18 H -0.282 1.282 19 C -0.102 4.102 20 C -0.125 4.125 21 C -0.110 4.110 22 H 0.060 0.940 23 H 0.063 0.937 24 H 0.059 0.941 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.385 0.615 32 H 0.255 0.745 33 H 0.058 0.942 34 H 0.040 0.960 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.050 0.950 38 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.517 5.638 2.655 13.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.021 3.979 3 C -0.230 4.230 4 O -0.288 6.288 5 C 0.019 3.981 6 H 0.099 0.901 7 C -0.228 4.228 8 C 0.063 3.937 9 H 0.085 0.915 10 N -0.343 5.343 11 C -0.371 4.371 12 H 0.090 0.910 13 C -0.209 4.209 14 N -0.582 5.582 15 Si 0.739 3.261 16 H -0.217 1.217 17 H -0.218 1.218 18 H -0.207 1.207 19 C -0.104 4.104 20 C -0.182 4.182 21 C -0.167 4.167 22 H 0.079 0.921 23 H 0.082 0.918 24 H 0.078 0.922 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.220 0.780 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.060 0.940 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -12.404 5.609 2.878 13.914 hybrid contribution 1.072 -0.072 -0.502 1.185 sum -11.332 5.537 2.376 12.835 Atomic orbital electron populations 1.21851 0.94389 1.02331 1.01904 1.22074 0.94349 0.92618 0.88892 1.22307 1.01990 0.96995 1.01727 1.87921 1.37201 1.69190 1.34498 1.23924 0.82597 0.93322 0.98217 0.90115 1.24289 0.97596 1.00807 1.00077 1.21041 0.87683 0.91044 0.93897 0.91472 1.42211 1.04223 1.75532 1.12361 1.19297 0.84032 1.35953 0.97824 0.91004 1.24746 0.98205 1.01904 0.96005 1.69659 1.34169 1.50034 1.04329 0.86170 0.85105 0.77834 0.76979 1.21683 1.21807 1.20718 1.22732 0.97985 0.93805 0.95842 1.21554 0.99625 0.96574 1.00471 1.21311 0.98445 1.01416 0.95565 0.92134 0.91832 0.92223 0.92532 0.92189 0.92358 0.92199 0.90758 0.91580 0.77973 0.93469 0.92313 0.94049 0.92286 0.92473 0.93071 0.93133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.56 37.15 0.36 -1.26 16 2 C 0.08 1.06 3.33 -26.73 -0.09 0.97 16 3 C -0.17 -2.13 9.53 37.16 0.35 -1.78 16 4 O -0.37 -5.90 9.10 -35.23 -0.32 -6.22 16 5 C 0.08 1.34 3.55 -25.92 -0.09 1.25 16 6 H 0.08 1.50 7.28 -51.93 -0.38 1.12 16 7 C -0.19 -3.46 7.36 -25.92 -0.19 -3.65 16 8 C 0.18 3.61 4.02 -67.12 -0.27 3.34 16 9 H 0.07 1.39 8.06 -51.93 -0.42 0.97 16 10 N -0.70 -17.58 4.82 -52.63 -0.25 -17.83 16 11 C -0.24 -6.64 9.97 -15.06 -0.15 -6.79 16 12 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 13 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 14 N -0.93 -27.96 13.06 55.49 0.72 -27.24 16 15 Si 0.91 22.32 29.55 -169.99 -5.02 17.30 16 16 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 17 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 19 C -0.10 -1.79 1.33 -153.70 -0.21 -2.00 16 20 C -0.12 -2.23 8.58 37.16 0.32 -1.91 16 21 C -0.11 -1.69 8.46 37.16 0.31 -1.37 16 22 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 24 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.06 0.77 7.42 -51.93 -0.39 0.39 16 26 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.07 1.28 7.66 -51.93 -0.40 0.88 16 30 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 31 H 0.39 10.11 6.37 -40.82 -0.26 9.85 16 32 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.06 1.15 6.63 -51.93 -0.34 0.80 16 36 H 0.06 0.87 7.20 -51.93 -0.37 0.49 16 37 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 305.36 15.07 4.60 4.60 Total: -1.00 -29.11 305.36 -6.78 -35.89 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -6.75 Total: 7.16 kcal Atomic # 6 Polarization: -13.92 SS G_CDS: 0.25 Total: -13.67 kcal Atomic # 7 Polarization: -45.54 SS G_CDS: 0.47 Total: -45.07 kcal Atomic # 8 Polarization: -5.90 SS G_CDS: -0.32 Total: -6.22 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.11 -6.78 -35.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590756666.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.964 kcal (2) G-P(sol) polarization free energy of solvation -29.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds