Wall clock time and date at job start Sun Mar 29 2020 22:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.47281 * 2 1 4 4 O 1.42902 * 109.46947 * 120.00210 * 2 1 3 5 5 C 1.42898 * 113.99945 * 90.00074 * 4 2 1 6 6 H 1.09002 * 112.85240 * 20.32953 * 5 4 2 7 7 C 1.53779 * 113.68762 * 249.05729 * 5 4 2 8 8 C 1.53775 * 87.08438 * 220.00851 * 7 5 4 9 9 H 1.09003 * 113.69236 * 270.87858 * 8 7 5 10 10 N 1.46500 * 113.61656 * 139.98199 * 8 7 5 11 11 C 1.36934 * 120.00053 * 107.50469 * 10 8 7 12 12 H 1.07998 * 119.99920 * 0.02562 * 11 10 8 13 13 C 1.38813 * 120.00218 * 180.02562 * 11 10 8 14 14 N 1.31617 * 119.99718 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00017 * 179.97438 * 13 11 10 16 16 H 1.48509 * 109.46964 * 90.00279 * 15 13 11 17 17 H 1.48502 * 109.47127 * 209.99915 * 15 13 11 18 18 H 1.48495 * 109.47645 * 330.00307 * 15 13 11 19 19 C 1.53777 * 87.07992 * 25.43258 * 8 7 5 20 20 C 1.52999 * 113.61889 * 220.01735 * 19 8 7 21 21 C 1.53005 * 113.68865 * 89.12640 * 19 8 7 22 22 H 1.08999 * 109.46596 * 300.00354 * 1 2 3 23 23 H 1.08992 * 109.46866 * 59.99526 * 1 2 3 24 24 H 1.08994 * 109.46935 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46928 * 240.00078 * 2 1 3 26 26 H 1.08996 * 109.47166 * 180.02562 * 3 2 1 27 27 H 1.09002 * 109.46855 * 300.00285 * 3 2 1 28 28 H 1.08998 * 109.47076 * 60.00169 * 3 2 1 29 29 H 1.08993 * 113.61983 * 334.56155 * 7 5 4 30 30 H 1.09008 * 113.61130 * 105.46363 * 7 5 4 31 31 H 0.97002 * 120.00084 * 287.50976 * 10 8 7 32 32 H 0.97006 * 119.99910 * 179.97438 * 14 13 11 33 33 H 1.09000 * 109.47191 * 177.00657 * 20 19 8 34 34 H 1.08999 * 109.46649 * 297.00332 * 20 19 8 35 35 H 1.08996 * 109.46874 * 57.00008 * 20 19 8 36 36 H 1.09000 * 109.47086 * 302.95661 * 21 19 8 37 37 H 1.08996 * 109.47431 * 62.96029 * 21 19 8 38 38 H 1.09007 * 109.46989 * 182.96197 * 21 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 2.2001 -2.0782 0.9886 6 1 2.2997 -2.3622 -0.0591 7 6 1.1971 -2.9442 1.7689 8 6 2.3724 -3.8856 2.0806 9 1 2.5201 -4.6643 1.3324 10 7 2.3595 -4.4071 3.4496 11 6 2.0353 -5.7174 3.6801 12 1 1.7895 -6.3664 2.8526 13 6 2.0225 -6.2115 4.9773 14 7 2.3215 -5.4203 5.9857 15 14 1.5795 -7.9987 5.2917 16 1 2.8108 -8.8281 5.2528 17 1 0.9410 -8.1230 6.6266 18 1 0.6348 -8.4660 4.2457 19 6 3.2941 -2.6689 1.8936 20 6 4.5934 -2.9923 1.1533 21 6 3.5250 -1.8695 3.1776 22 1 -0.3632 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 3.1301 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6768 1.9563 0.8900 29 1 0.7873 -2.4508 2.6502 30 1 0.4298 -3.3969 1.1408 31 1 2.5805 -3.8242 4.1928 32 1 2.3123 -5.7654 6.8922 33 1 5.1683 -2.0771 1.0116 34 1 5.1782 -3.7017 1.7389 35 1 4.3594 -3.4285 0.1822 36 1 2.5660 -1.5436 3.5802 37 1 4.0322 -2.4973 3.9102 38 1 4.1415 -0.9980 2.9571 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590756667.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:27 Heat of formation + Delta-G solvation = -29.432839 kcal Electronic energy + Delta-G solvation = -16606.325436 eV Core-core repulsion = 14063.479925 eV Total energy + Delta-G solvation = -2542.845510 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.65851 -36.97862 -33.49311 -32.04548 -30.40581 -29.39120 -27.17686 -26.89953 -24.41971 -22.26275 -21.62545 -21.10645 -18.00307 -17.03062 -16.46798 -15.02016 -14.79957 -14.54173 -14.14339 -13.76148 -13.35504 -12.84648 -12.69471 -12.37532 -12.30788 -12.22496 -11.77751 -11.54766 -11.44926 -11.22248 -11.08602 -10.90907 -10.83048 -10.64272 -10.23640 -10.19446 -10.11101 -9.78503 -9.35749 -8.85533 -8.79800 -6.89624 -5.74423 -3.02316 3.45001 3.50112 3.51915 3.95342 4.62919 4.93078 5.00688 5.14290 5.22930 5.25950 5.30327 5.52397 5.57014 5.61932 5.73103 5.80189 5.85344 5.89241 5.94893 6.10833 6.13957 6.20915 6.22141 6.26741 6.38336 6.44618 6.51705 6.62246 6.70815 6.86136 7.09118 7.15307 7.71388 7.72728 8.44669 9.55914 10.15224 10.50444 11.48169 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.043030 B = 0.006172 C = 0.005917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.549474 B = 4535.524708 C = 4731.333377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.079 3.921 3 C -0.149 4.149 4 O -0.362 6.362 5 C 0.068 3.932 6 H 0.076 0.924 7 C -0.180 4.180 8 C 0.174 3.826 9 H 0.075 0.925 10 N -0.708 5.708 11 C -0.242 4.242 12 H 0.070 0.930 13 C -0.013 4.013 14 N -0.932 5.932 15 Si 0.906 3.094 16 H -0.290 1.290 17 H -0.292 1.292 18 H -0.282 1.282 19 C -0.096 4.096 20 C -0.131 4.131 21 C -0.111 4.111 22 H 0.061 0.939 23 H 0.057 0.943 24 H 0.058 0.942 25 H 0.054 0.946 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.084 0.916 30 H 0.053 0.947 31 H 0.389 0.611 32 H 0.255 0.745 33 H 0.046 0.954 34 H 0.060 0.940 35 H 0.047 0.953 36 H 0.058 0.942 37 H 0.061 0.939 38 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.183 10.441 -12.493 16.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.021 3.979 3 C -0.206 4.206 4 O -0.281 6.281 5 C 0.010 3.990 6 H 0.094 0.906 7 C -0.222 4.222 8 C 0.061 3.939 9 H 0.093 0.907 10 N -0.347 5.347 11 C -0.373 4.373 12 H 0.088 0.912 13 C -0.209 4.209 14 N -0.581 5.581 15 Si 0.738 3.262 16 H -0.217 1.217 17 H -0.218 1.218 18 H -0.208 1.208 19 C -0.098 4.098 20 C -0.188 4.188 21 C -0.168 4.168 22 H 0.080 0.920 23 H 0.076 0.924 24 H 0.077 0.923 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.103 0.897 30 H 0.071 0.929 31 H 0.224 0.776 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.066 0.934 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 0.175 10.327 -12.276 16.042 hybrid contribution -0.366 -0.903 0.174 0.989 sum -0.191 9.424 -12.102 15.340 Atomic orbital electron populations 1.22315 0.96419 1.02464 1.01907 1.22076 0.93490 0.93616 0.88695 1.21855 1.01612 0.95085 1.02038 1.87991 1.85556 1.20325 1.34237 1.23833 0.97899 0.79806 0.97432 0.90644 1.24326 0.98715 0.98962 1.00157 1.21381 0.91961 0.91267 0.89250 0.90688 1.42396 1.81014 1.09821 1.01476 1.19310 1.38582 0.87165 0.92262 0.91189 1.24743 1.02540 0.97982 0.95629 1.69665 1.55314 1.34644 0.98432 0.86199 0.77921 0.84931 0.77191 1.21745 1.21803 1.20791 1.22678 0.93955 0.97391 0.95749 1.21684 0.97087 1.00728 0.99324 1.21225 1.01726 0.98202 0.95668 0.91962 0.92400 0.92290 0.92793 0.92204 0.91851 0.91940 0.89698 0.92870 0.77566 0.93495 0.93443 0.92106 0.93355 0.92310 0.92001 0.93549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.98 9.53 37.16 0.35 -1.63 16 2 C 0.08 0.97 3.34 -26.73 -0.09 0.88 16 3 C -0.15 -1.54 9.56 37.16 0.36 -1.19 16 4 O -0.36 -5.68 9.15 -35.23 -0.32 -6.00 16 5 C 0.07 1.09 3.68 -25.92 -0.10 1.00 16 6 H 0.08 1.08 7.33 -51.93 -0.38 0.70 16 7 C -0.18 -3.35 7.36 -25.92 -0.19 -3.54 16 8 C 0.17 3.56 3.93 -67.12 -0.26 3.30 16 9 H 0.08 1.52 8.06 -51.93 -0.42 1.10 16 10 N -0.71 -18.03 5.28 -52.64 -0.28 -18.31 16 11 C -0.24 -6.78 9.97 -15.06 -0.15 -6.93 16 12 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 13 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 14 N -0.93 -28.39 13.06 55.49 0.72 -27.67 16 15 Si 0.91 22.52 29.55 -169.99 -5.02 17.50 16 16 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 17 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 19 C -0.10 -1.68 1.35 -153.70 -0.21 -1.89 16 20 C -0.13 -2.03 9.17 37.16 0.34 -1.69 16 21 C -0.11 -2.04 7.29 37.16 0.27 -1.77 16 22 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.05 0.61 7.42 -51.93 -0.39 0.23 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.08 1.74 7.63 -51.93 -0.40 1.35 16 30 H 0.05 0.93 8.14 -51.92 -0.42 0.51 16 31 H 0.39 10.47 5.94 -40.82 -0.24 10.23 16 32 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.05 0.67 8.01 -51.93 -0.42 0.25 16 36 H 0.06 1.14 7.25 -51.93 -0.38 0.77 16 37 H 0.06 1.24 7.29 -51.93 -0.38 0.86 16 38 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 305.53 15.07 4.60 4.60 Total: -1.00 -29.96 305.53 -6.83 -36.79 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -6.77 Total: 6.99 kcal Atomic # 6 Polarization: -14.13 SS G_CDS: 0.23 Total: -13.91 kcal Atomic # 7 Polarization: -46.42 SS G_CDS: 0.45 Total: -45.98 kcal Atomic # 8 Polarization: -5.68 SS G_CDS: -0.32 Total: -6.00 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.96 -6.83 -36.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590756667.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.358 kcal (2) G-P(sol) polarization free energy of solvation -29.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds