Wall clock time and date at job start Sun Mar 29 2020 22:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.47281 * 2 1 4 4 O 1.42902 * 109.46947 * 120.00210 * 2 1 3 5 5 C 1.42898 * 113.99945 * 90.00074 * 4 2 1 6 6 H 1.09002 * 112.85240 * 20.32953 * 5 4 2 7 7 C 1.53779 * 113.68762 * 249.05729 * 5 4 2 8 8 C 1.53775 * 87.08438 * 220.00851 * 7 5 4 9 9 H 1.09003 * 113.69236 * 270.87858 * 8 7 5 10 10 N 1.46500 * 113.61656 * 139.98199 * 8 7 5 11 11 C 1.36934 * 120.00053 * 107.50469 * 10 8 7 12 12 H 1.07998 * 119.99920 * 0.02562 * 11 10 8 13 13 C 1.38813 * 120.00218 * 180.02562 * 11 10 8 14 14 N 1.31617 * 119.99718 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00017 * 179.97438 * 13 11 10 16 16 H 1.48509 * 109.46964 * 90.00279 * 15 13 11 17 17 H 1.48502 * 109.47127 * 209.99915 * 15 13 11 18 18 H 1.48495 * 109.47645 * 330.00307 * 15 13 11 19 19 C 1.53777 * 87.07992 * 25.43258 * 8 7 5 20 20 C 1.52999 * 113.61889 * 220.01735 * 19 8 7 21 21 C 1.53005 * 113.68865 * 89.12640 * 19 8 7 22 22 H 1.08999 * 109.46596 * 300.00354 * 1 2 3 23 23 H 1.08992 * 109.46866 * 59.99526 * 1 2 3 24 24 H 1.08994 * 109.46935 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46928 * 240.00078 * 2 1 3 26 26 H 1.08996 * 109.47166 * 180.02562 * 3 2 1 27 27 H 1.09002 * 109.46855 * 300.00285 * 3 2 1 28 28 H 1.08998 * 109.47076 * 60.00169 * 3 2 1 29 29 H 1.08993 * 113.61983 * 334.56155 * 7 5 4 30 30 H 1.09008 * 113.61130 * 105.46363 * 7 5 4 31 31 H 0.97002 * 120.00084 * 287.50976 * 10 8 7 32 32 H 0.97006 * 119.99910 * 179.97438 * 14 13 11 33 33 H 1.09000 * 109.47191 * 177.00657 * 20 19 8 34 34 H 1.08999 * 109.46649 * 297.00332 * 20 19 8 35 35 H 1.08996 * 109.46874 * 57.00008 * 20 19 8 36 36 H 1.09000 * 109.47086 * 302.95661 * 21 19 8 37 37 H 1.08996 * 109.47431 * 62.96029 * 21 19 8 38 38 H 1.09007 * 109.46989 * 182.96197 * 21 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 2.2001 -2.0782 0.9886 6 1 2.2997 -2.3622 -0.0591 7 6 1.1971 -2.9442 1.7689 8 6 2.3724 -3.8856 2.0806 9 1 2.5201 -4.6643 1.3324 10 7 2.3595 -4.4071 3.4496 11 6 2.0353 -5.7174 3.6801 12 1 1.7895 -6.3664 2.8526 13 6 2.0225 -6.2115 4.9773 14 7 2.3215 -5.4203 5.9857 15 14 1.5795 -7.9987 5.2917 16 1 2.8108 -8.8281 5.2528 17 1 0.9410 -8.1230 6.6266 18 1 0.6348 -8.4660 4.2457 19 6 3.2941 -2.6689 1.8936 20 6 4.5934 -2.9923 1.1533 21 6 3.5250 -1.8695 3.1776 22 1 -0.3632 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 3.1301 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6768 1.9563 0.8900 29 1 0.7873 -2.4508 2.6502 30 1 0.4298 -3.3969 1.1408 31 1 2.5805 -3.8242 4.1928 32 1 2.3123 -5.7654 6.8922 33 1 5.1683 -2.0771 1.0116 34 1 5.1782 -3.7017 1.7389 35 1 4.3594 -3.4285 0.1822 36 1 2.5660 -1.5436 3.5802 37 1 4.0322 -2.4973 3.9102 38 1 4.1415 -0.9980 2.9571 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590756667.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:27 Heat of formation + Delta-G solvation = -47.587803 kcal Electronic energy + Delta-G solvation = -16607.112694 eV Core-core repulsion = 14063.479925 eV Total energy + Delta-G solvation = -2543.632769 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.06570 -38.18914 -35.44142 -33.16620 -32.19879 -31.00815 -28.31742 -28.02662 -26.35981 -23.80248 -23.16339 -22.10218 -19.69860 -18.88448 -17.72069 -16.52146 -16.20409 -16.00103 -15.59674 -15.36719 -14.81108 -14.19712 -14.02257 -13.80255 -13.50480 -13.13078 -13.03142 -13.01181 -12.87345 -12.83928 -12.70813 -12.46212 -12.24111 -12.11609 -11.99286 -11.67281 -11.60096 -11.35578 -10.97862 -10.76602 -10.12682 -8.94065 -7.93026 -5.20843 1.47419 1.49332 1.57668 2.56319 2.85780 3.37904 3.65885 3.79006 3.93754 4.07672 4.18259 4.23425 4.29311 4.37356 4.48489 4.49845 4.71561 4.78520 4.80973 4.87729 4.94614 4.98323 5.00774 5.04899 5.10517 5.18354 5.25623 5.31514 5.36364 5.39372 5.49977 5.63069 5.66070 6.29035 6.56678 7.35290 8.13602 8.37176 9.30769 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.043030 B = 0.006172 C = 0.005917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.549474 B = 4535.524708 C = 4731.333377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.069 3.931 3 C -0.145 4.145 4 O -0.381 6.381 5 C 0.091 3.909 6 H 0.105 0.895 7 C -0.177 4.177 8 C 0.155 3.845 9 H 0.081 0.919 10 N -0.724 5.724 11 C -0.243 4.243 12 H 0.077 0.923 13 C -0.077 4.077 14 N -0.972 5.972 15 Si 0.974 3.026 16 H -0.286 1.286 17 H -0.297 1.297 18 H -0.269 1.269 19 C -0.094 4.094 20 C -0.126 4.126 21 C -0.102 4.102 22 H 0.050 0.950 23 H 0.083 0.917 24 H 0.047 0.953 25 H 0.071 0.929 26 H 0.059 0.941 27 H 0.088 0.912 28 H 0.052 0.948 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.377 0.623 32 H 0.250 0.750 33 H 0.065 0.935 34 H 0.044 0.956 35 H 0.069 0.931 36 H 0.038 0.962 37 H 0.036 0.964 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.225 10.839 -15.053 18.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.012 3.988 3 C -0.202 4.202 4 O -0.300 6.300 5 C 0.033 3.967 6 H 0.122 0.878 7 C -0.218 4.218 8 C 0.045 3.955 9 H 0.099 0.901 10 N -0.362 5.362 11 C -0.374 4.374 12 H 0.095 0.905 13 C -0.269 4.269 14 N -0.623 5.623 15 Si 0.803 3.197 16 H -0.214 1.214 17 H -0.224 1.224 18 H -0.194 1.194 19 C -0.096 4.096 20 C -0.183 4.183 21 C -0.160 4.160 22 H 0.069 0.931 23 H 0.102 0.898 24 H 0.066 0.934 25 H 0.089 0.911 26 H 0.078 0.922 27 H 0.107 0.893 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.210 0.790 32 H 0.059 0.941 33 H 0.084 0.916 34 H 0.063 0.937 35 H 0.088 0.912 36 H 0.057 0.943 37 H 0.055 0.945 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.210 10.742 -14.901 18.371 hybrid contribution -0.403 -0.933 0.895 1.354 sum -0.193 9.809 -14.007 17.101 Atomic orbital electron populations 1.22302 0.95993 1.01971 1.02639 1.22396 0.93933 0.94482 0.88026 1.21856 1.01606 0.93904 1.02875 1.87981 1.85717 1.19812 1.36461 1.23593 0.94997 0.80116 0.98003 0.87754 1.24144 0.98769 0.99047 0.99846 1.21739 0.94289 0.92536 0.86934 0.90149 1.42574 1.81341 1.09052 1.03233 1.19734 1.36897 0.88330 0.92487 0.90462 1.25567 1.03646 1.02137 0.95570 1.69833 1.57437 1.36491 0.98516 0.85136 0.77731 0.80070 0.76801 1.21352 1.22424 1.19384 1.22590 0.95316 0.95703 0.95980 1.21649 0.95660 1.01377 0.99637 1.21115 1.00644 0.98555 0.95679 0.93121 0.89823 0.93379 0.91085 0.92212 0.89293 0.92858 0.92418 0.91882 0.78988 0.94097 0.91574 0.93734 0.91224 0.94252 0.94500 0.91577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.52 9.53 71.98 0.69 -2.83 16 2 C 0.07 1.49 3.34 30.60 0.10 1.59 16 3 C -0.15 -2.59 9.56 71.98 0.69 -1.90 16 4 O -0.38 -11.17 9.15 -148.98 -1.36 -12.53 16 5 C 0.09 2.72 3.68 31.12 0.11 2.83 16 6 H 0.10 2.55 7.33 -2.39 -0.02 2.54 16 7 C -0.18 -6.47 7.36 31.12 0.23 -6.24 16 8 C 0.16 6.30 3.93 45.51 0.18 6.48 16 9 H 0.08 3.15 8.06 -2.39 -0.02 3.13 16 10 N -0.72 -37.64 5.28 -320.46 -1.69 -39.34 16 11 C -0.24 -13.72 9.97 84.03 0.84 -12.88 16 12 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 13 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16 14 N -0.97 -60.91 13.06 21.65 0.28 -60.63 16 15 Si 0.97 46.82 29.55 68.60 2.03 48.85 16 16 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 17 H -0.30 -14.46 7.11 99.48 0.71 -13.76 16 18 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 19 C -0.09 -3.20 1.35 -51.66 -0.07 -3.27 16 20 C -0.13 -3.60 9.17 71.98 0.66 -2.94 16 21 C -0.10 -3.80 7.29 71.98 0.52 -3.27 16 22 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 23 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 24 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.07 1.32 7.42 -2.39 -0.02 1.30 16 26 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.06 2.42 7.63 -2.39 -0.02 2.41 16 30 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 31 H 0.38 21.13 5.94 -92.71 -0.55 20.58 16 32 H 0.25 15.20 8.31 -92.70 -0.77 14.42 16 33 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.07 1.69 8.01 -2.39 -0.02 1.67 16 36 H 0.04 1.57 7.25 -2.39 -0.02 1.55 16 37 H 0.04 1.52 7.29 -2.39 -0.02 1.50 16 38 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 Total: -1.00 -65.20 305.53 4.13 -61.07 By element: Atomic # 1 Polarization: 28.62 SS G_CDS: 0.46 Total: 29.07 kcal Atomic # 6 Polarization: -30.91 SS G_CDS: 4.42 Total: -26.49 kcal Atomic # 7 Polarization: -98.56 SS G_CDS: -1.41 Total: -99.97 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: -1.36 Total: -12.53 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.03 Total: 48.85 kcal Total: -65.20 4.13 -61.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590756667.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.480 kcal (2) G-P(sol) polarization free energy of solvation -65.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds