Wall clock time and date at job start Sun Mar 29 2020 22:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.86973 * 2 1 4 4 O 1.43743 * 109.88386 * 238.99282 * 2 1 3 5 5 C 1.44376 * 106.97973 * 214.06053 * 4 2 1 6 6 C 1.54997 * 103.62951 * 39.97901 * 5 4 2 7 7 C 1.54099 * 109.88116 * 121.16034 * 2 1 3 8 8 H 1.09001 * 110.48611 * 240.26866 * 7 2 1 9 9 N 1.46899 * 110.48592 * 2.77775 * 7 2 1 10 10 C 1.46905 * 110.99972 * 205.00091 * 9 7 2 11 11 C 1.53004 * 109.47068 * 180.02562 * 10 9 7 12 12 C 1.52990 * 109.46952 * 300.00072 * 11 10 9 13 13 C 1.53002 * 109.46982 * 60.00119 * 11 10 9 14 14 C 1.50693 * 109.47114 * 180.02562 * 11 10 9 15 15 H 1.08008 * 119.99812 * 0.02562 * 14 11 10 16 16 C 1.37877 * 120.00139 * 180.02562 * 14 11 10 17 17 N 1.31508 * 119.99885 * 0.02562 * 16 14 11 18 18 Si 1.86806 * 120.00111 * 179.97438 * 16 14 11 19 19 H 1.48504 * 109.46678 * 59.99928 * 18 16 14 20 20 H 1.48493 * 109.46804 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.46938 * 300.00295 * 18 16 14 22 22 H 1.09009 * 109.46637 * 179.55339 * 1 2 3 23 23 H 1.08994 * 109.47484 * 299.55315 * 1 2 3 24 24 H 1.09002 * 109.47371 * 59.55823 * 1 2 3 25 25 H 1.09002 * 110.62025 * 158.56037 * 5 4 2 26 26 H 1.09000 * 110.61614 * 281.39948 * 5 4 2 27 27 H 1.09003 * 110.90844 * 81.25728 * 6 5 4 28 28 H 1.09002 * 110.90817 * 204.85582 * 6 5 4 29 29 H 1.00901 * 111.00119 * 81.05273 * 9 7 2 30 30 H 1.08998 * 109.47224 * 300.00175 * 10 9 7 31 31 H 1.09002 * 109.47042 * 60.00103 * 10 9 7 32 32 H 1.08999 * 109.47669 * 59.99962 * 12 11 10 33 33 H 1.09007 * 109.47249 * 179.97438 * 12 11 10 34 34 H 1.08997 * 109.47445 * 299.99737 * 12 11 10 35 35 H 1.08998 * 109.47257 * 60.00055 * 13 11 10 36 36 H 1.08998 * 109.46962 * 180.02562 * 13 11 10 37 37 H 1.09004 * 109.47248 * 299.99816 * 13 11 10 38 38 H 0.97007 * 119.99986 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 8 2.0188 -0.6963 -1.1586 5 6 3.2380 -1.3630 -0.7665 6 6 2.9238 -1.8919 0.6561 7 6 2.0540 -0.7498 1.2401 8 1 2.6599 -0.0876 1.8585 9 7 0.9363 -1.2989 2.0193 10 6 1.3139 -1.4773 3.4277 11 6 0.1272 -2.0502 4.2052 12 6 -1.0566 -1.0854 4.1128 13 6 -0.2689 -3.4021 3.6082 14 6 0.5143 -2.2326 5.6501 15 1 1.5073 -1.9661 5.9809 16 6 -0.3992 -2.7396 6.5499 17 7 -1.6081 -3.0645 6.1470 18 14 0.0809 -2.9663 8.3409 19 1 0.4649 -1.6540 8.9203 20 1 -1.0709 -3.5222 9.0955 21 1 1.2303 -3.9023 8.4305 22 1 -0.3633 -1.0277 -0.0080 23 1 -0.3634 0.5068 0.8939 24 1 -0.3634 0.5207 -0.8860 25 1 3.4586 -2.1887 -1.4430 26 1 4.0691 -0.6583 -0.7392 27 1 2.3599 -2.8236 0.6090 28 1 3.8390 -2.0217 1.2338 29 1 0.6087 -2.1659 1.6202 30 1 2.1570 -2.1650 3.4936 31 1 1.5965 -0.5142 3.8529 32 1 -1.3368 -0.9529 3.0678 33 1 -1.9022 -1.4937 4.6664 34 1 -0.7744 -0.1223 4.5381 35 1 0.5745 -4.0894 3.6741 36 1 -1.1146 -3.8100 4.1619 37 1 -0.5491 -3.2698 2.5632 38 1 -2.2510 -3.4208 6.7801 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590970552.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:09 Heat of formation + Delta-G solvation = -52.171424 kcal Electronic energy + Delta-G solvation = -16800.052506 eV Core-core repulsion = 14256.220976 eV Total energy + Delta-G solvation = -2543.831529 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.58916 -36.64287 -33.97206 -31.39550 -31.20067 -29.13786 -25.57942 -25.30818 -25.21838 -23.57616 -22.07971 -19.94829 -18.56968 -16.47945 -15.94568 -15.59490 -15.31015 -14.68171 -14.20493 -13.73578 -13.41329 -12.79398 -12.53667 -12.20466 -12.16084 -11.90919 -11.60399 -11.16445 -11.09705 -11.02646 -10.73613 -10.71152 -10.63441 -10.46624 -10.19286 -10.06284 -9.60181 -9.39380 -9.05223 -8.64387 -8.29667 -7.71117 -5.91986 -4.02616 3.31719 3.36807 3.39151 4.00860 4.41098 4.57487 4.83979 4.98248 5.18479 5.24359 5.33442 5.42858 5.68498 5.70263 5.78116 5.90155 6.06430 6.13896 6.29595 6.34815 6.40683 6.70268 6.72713 6.88180 7.04704 7.08073 7.15646 7.36988 7.46046 7.70974 7.74903 7.81925 7.93543 8.20152 8.33729 8.54765 8.98627 9.62458 11.08468 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.049334 B = 0.006327 C = 0.006019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.419117 B = 4424.705258 C = 4650.635349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.078 3.922 3 H 0.063 0.937 4 O -0.380 6.380 5 C 0.050 3.950 6 C -0.185 4.185 7 C 0.058 3.942 8 H 0.085 0.915 9 N -0.671 5.671 10 C 0.074 3.926 11 C 0.070 3.930 12 C -0.119 4.119 13 C -0.132 4.132 14 C -0.508 4.508 15 H 0.051 0.949 16 C 0.066 3.934 17 N -0.885 5.885 18 Si 0.888 3.112 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.279 1.279 22 H 0.061 0.939 23 H 0.080 0.920 24 H 0.042 0.958 25 H 0.087 0.913 26 H 0.056 0.944 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.341 0.659 30 H 0.013 0.987 31 H 0.056 0.944 32 H 0.021 0.979 33 H 0.074 0.926 34 H 0.018 0.982 35 H 0.018 0.982 36 H 0.083 0.917 37 H 0.010 0.990 38 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.294 3.172 -10.083 12.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.020 3.980 3 H 0.081 0.919 4 O -0.300 6.300 5 C -0.028 4.028 6 C -0.224 4.224 7 C -0.054 4.054 8 H 0.103 0.897 9 N -0.302 5.302 10 C -0.054 4.054 11 C 0.069 3.931 12 C -0.177 4.177 13 C -0.190 4.190 14 C -0.547 4.547 15 H 0.069 0.931 16 C -0.135 4.135 17 N -0.523 5.523 18 Si 0.717 3.283 19 H -0.204 1.204 20 H -0.213 1.213 21 H -0.205 1.205 22 H 0.080 0.920 23 H 0.099 0.901 24 H 0.061 0.939 25 H 0.105 0.895 26 H 0.074 0.926 27 H 0.096 0.904 28 H 0.095 0.905 29 H 0.162 0.838 30 H 0.031 0.969 31 H 0.074 0.926 32 H 0.040 0.960 33 H 0.092 0.908 34 H 0.037 0.963 35 H 0.037 0.963 36 H 0.102 0.898 37 H 0.029 0.971 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.703 3.705 -10.084 12.163 hybrid contribution 1.143 -0.964 1.244 1.945 sum 6.846 2.741 -8.840 11.512 Atomic orbital electron populations 1.21584 0.92563 1.02897 1.01226 1.22821 0.96432 0.94619 0.84162 0.91936 1.88877 1.39426 1.67869 1.33804 1.23382 0.87923 0.96101 0.95353 1.23903 1.01523 1.00060 0.96951 1.22994 0.91735 0.95638 0.95036 0.89718 1.60739 1.32014 1.34088 1.03367 1.22204 0.98341 0.98883 0.85966 1.18077 0.90525 0.91661 0.92841 1.21643 1.01005 0.97356 0.97703 1.21836 1.01651 0.98998 0.96506 1.21071 0.98303 1.42298 0.93031 0.93115 1.24877 0.94976 0.95361 0.98293 1.69821 1.04508 1.43808 1.34186 0.86727 0.77860 0.78358 0.85405 1.20406 1.21334 1.20498 0.92001 0.90131 0.93920 0.89522 0.92586 0.90439 0.90493 0.83822 0.96879 0.92597 0.96046 0.90773 0.96319 0.96286 0.89809 0.97089 0.93113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.80 8.58 37.16 0.32 -1.48 16 2 C 0.08 1.09 4.06 -26.16 -0.11 0.99 16 3 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 4 O -0.38 -5.55 11.19 -35.23 -0.39 -5.94 16 5 C 0.05 0.59 7.71 38.21 0.29 0.88 16 6 C -0.18 -2.39 6.85 -24.63 -0.17 -2.55 16 7 C 0.06 0.84 3.34 -66.09 -0.22 0.62 16 8 H 0.08 1.22 7.82 -51.93 -0.41 0.82 16 9 N -0.67 -11.50 3.72 -105.01 -0.39 -11.89 16 10 C 0.07 1.50 4.45 -3.82 -0.02 1.49 16 11 C 0.07 1.65 0.57 -155.67 -0.09 1.56 16 12 C -0.12 -2.86 8.09 37.15 0.30 -2.56 16 13 C -0.13 -3.09 7.92 37.16 0.29 -2.79 16 14 C -0.51 -13.57 8.01 -34.44 -0.28 -13.85 16 15 H 0.05 1.35 7.74 -52.48 -0.41 0.95 16 16 C 0.07 1.78 5.15 -17.82 -0.09 1.69 16 17 N -0.88 -24.38 9.35 55.43 0.52 -23.86 16 18 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 22 H 0.06 0.94 7.46 -51.92 -0.39 0.55 16 23 H 0.08 1.21 7.91 -51.93 -0.41 0.80 16 24 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.08 1.06 7.58 -51.93 -0.39 0.66 16 28 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.34 5.97 5.77 -39.29 -0.23 5.74 16 30 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 1.16 8.08 -51.93 -0.42 0.74 16 32 H 0.02 0.46 7.60 -51.93 -0.39 0.07 16 33 H 0.07 1.96 6.07 -51.92 -0.32 1.65 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.08 2.18 6.07 -51.93 -0.32 1.87 16 37 H 0.01 0.22 6.57 -51.93 -0.34 -0.12 16 38 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 291.97 15.07 4.40 4.40 Total: -1.00 -27.05 291.97 -7.18 -34.23 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -6.53 Total: 3.08 kcal Atomic # 6 Polarization: -16.24 SS G_CDS: 0.24 Total: -16.01 kcal Atomic # 7 Polarization: -35.88 SS G_CDS: 0.13 Total: -35.76 kcal Atomic # 8 Polarization: -5.55 SS G_CDS: -0.39 Total: -5.94 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -27.05 -7.18 -34.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590970552.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.942 kcal (2) G-P(sol) polarization free energy of solvation -27.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds