Wall clock time and date at job start Sun Mar 29 2020 22:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.86973 * 2 1 4 4 O 1.43743 * 109.88386 * 238.99282 * 2 1 3 5 5 C 1.44376 * 106.97973 * 214.06053 * 4 2 1 6 6 C 1.54997 * 103.62951 * 39.97901 * 5 4 2 7 7 C 1.54099 * 109.88116 * 121.16034 * 2 1 3 8 8 H 1.09001 * 110.48611 * 240.26866 * 7 2 1 9 9 N 1.46899 * 110.48592 * 2.77775 * 7 2 1 10 10 C 1.46905 * 110.99972 * 205.00091 * 9 7 2 11 11 C 1.53004 * 109.47068 * 180.02562 * 10 9 7 12 12 C 1.52990 * 109.46952 * 300.00072 * 11 10 9 13 13 C 1.53002 * 109.46982 * 60.00119 * 11 10 9 14 14 C 1.50693 * 109.47114 * 180.02562 * 11 10 9 15 15 H 1.08008 * 119.99812 * 0.02562 * 14 11 10 16 16 C 1.37877 * 120.00139 * 180.02562 * 14 11 10 17 17 N 1.31508 * 119.99885 * 0.02562 * 16 14 11 18 18 Si 1.86806 * 120.00111 * 179.97438 * 16 14 11 19 19 H 1.48504 * 109.46678 * 59.99928 * 18 16 14 20 20 H 1.48493 * 109.46804 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.46938 * 300.00295 * 18 16 14 22 22 H 1.09009 * 109.46637 * 179.55339 * 1 2 3 23 23 H 1.08994 * 109.47484 * 299.55315 * 1 2 3 24 24 H 1.09002 * 109.47371 * 59.55823 * 1 2 3 25 25 H 1.09002 * 110.62025 * 158.56037 * 5 4 2 26 26 H 1.09000 * 110.61614 * 281.39948 * 5 4 2 27 27 H 1.09003 * 110.90844 * 81.25728 * 6 5 4 28 28 H 1.09002 * 110.90817 * 204.85582 * 6 5 4 29 29 H 1.00901 * 111.00119 * 81.05273 * 9 7 2 30 30 H 1.08998 * 109.47224 * 300.00175 * 10 9 7 31 31 H 1.09002 * 109.47042 * 60.00103 * 10 9 7 32 32 H 1.08999 * 109.47669 * 59.99962 * 12 11 10 33 33 H 1.09007 * 109.47249 * 179.97438 * 12 11 10 34 34 H 1.08997 * 109.47445 * 299.99737 * 12 11 10 35 35 H 1.08998 * 109.47257 * 60.00055 * 13 11 10 36 36 H 1.08998 * 109.46962 * 180.02562 * 13 11 10 37 37 H 1.09004 * 109.47248 * 299.99816 * 13 11 10 38 38 H 0.97007 * 119.99986 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 8 2.0188 -0.6963 -1.1586 5 6 3.2380 -1.3630 -0.7665 6 6 2.9238 -1.8919 0.6561 7 6 2.0540 -0.7498 1.2401 8 1 2.6599 -0.0876 1.8585 9 7 0.9363 -1.2989 2.0193 10 6 1.3139 -1.4773 3.4277 11 6 0.1272 -2.0502 4.2052 12 6 -1.0566 -1.0854 4.1128 13 6 -0.2689 -3.4021 3.6082 14 6 0.5143 -2.2326 5.6501 15 1 1.5073 -1.9661 5.9809 16 6 -0.3992 -2.7396 6.5499 17 7 -1.6081 -3.0645 6.1470 18 14 0.0809 -2.9663 8.3409 19 1 0.4649 -1.6540 8.9203 20 1 -1.0709 -3.5222 9.0955 21 1 1.2303 -3.9023 8.4305 22 1 -0.3633 -1.0277 -0.0080 23 1 -0.3634 0.5068 0.8939 24 1 -0.3634 0.5207 -0.8860 25 1 3.4586 -2.1887 -1.4430 26 1 4.0691 -0.6583 -0.7392 27 1 2.3599 -2.8236 0.6090 28 1 3.8390 -2.0217 1.2338 29 1 0.6087 -2.1659 1.6202 30 1 2.1570 -2.1650 3.4936 31 1 1.5965 -0.5142 3.8529 32 1 -1.3368 -0.9529 3.0678 33 1 -1.9022 -1.4937 4.6664 34 1 -0.7744 -0.1223 4.5381 35 1 0.5745 -4.0894 3.6741 36 1 -1.1146 -3.8100 4.1619 37 1 -0.5491 -3.2698 2.5632 38 1 -2.2510 -3.4208 6.7801 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590970552.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:09 Heat of formation + Delta-G solvation = -67.741745 kcal Electronic energy + Delta-G solvation = -16800.727686 eV Core-core repulsion = 14256.220976 eV Total energy + Delta-G solvation = -2544.506709 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.70980 -38.31503 -35.51554 -33.17692 -32.27152 -30.54996 -27.49925 -27.23151 -26.51020 -25.15940 -23.08827 -21.12828 -20.40324 -17.94668 -17.54628 -16.85298 -16.60416 -16.31642 -15.64648 -15.20357 -14.82199 -14.32484 -14.04671 -13.91844 -13.36356 -13.12989 -13.05168 -12.94997 -12.88011 -12.50529 -12.47493 -12.19661 -12.07570 -11.97684 -11.80106 -11.69283 -11.30289 -10.92862 -10.59854 -10.56265 -10.33257 -9.11244 -7.95961 -6.12967 1.43534 1.44513 1.51090 2.46700 2.99642 3.26164 3.29093 3.74456 3.94227 4.15075 4.18759 4.34213 4.57930 4.62184 4.65856 4.69723 4.79439 4.87616 4.90220 5.00293 5.06378 5.10218 5.18014 5.22582 5.30254 5.44493 5.53758 5.59585 5.70690 5.78809 6.02402 6.19385 6.26992 6.35765 6.49788 6.62444 6.97045 7.54772 9.01898 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.049334 B = 0.006327 C = 0.006019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.419117 B = 4424.705258 C = 4650.635349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.080 3.920 3 H 0.076 0.924 4 O -0.397 6.397 5 C 0.050 3.950 6 C -0.181 4.181 7 C 0.054 3.946 8 H 0.088 0.912 9 N -0.669 5.669 10 C 0.091 3.909 11 C 0.060 3.940 12 C -0.106 4.106 13 C -0.120 4.120 14 C -0.528 4.528 15 H 0.045 0.955 16 C 0.023 3.977 17 N -0.904 5.904 18 Si 0.943 3.057 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.276 1.276 22 H 0.049 0.951 23 H 0.070 0.930 24 H 0.052 0.948 25 H 0.103 0.897 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.087 0.913 29 H 0.340 0.660 30 H 0.010 0.990 31 H 0.050 0.950 32 H 0.036 0.964 33 H 0.046 0.954 34 H 0.010 0.990 35 H 0.016 0.984 36 H 0.054 0.946 37 H 0.032 0.968 38 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.493 3.480 -10.846 13.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.022 3.978 3 H 0.094 0.906 4 O -0.317 6.317 5 C -0.027 4.027 6 C -0.221 4.221 7 C -0.057 4.057 8 H 0.106 0.894 9 N -0.301 5.301 10 C -0.038 4.038 11 C 0.060 3.940 12 C -0.164 4.164 13 C -0.178 4.178 14 C -0.566 4.566 15 H 0.063 0.937 16 C -0.176 4.176 17 N -0.543 5.543 18 Si 0.770 3.230 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.201 1.201 22 H 0.068 0.932 23 H 0.089 0.911 24 H 0.071 0.929 25 H 0.121 0.879 26 H 0.092 0.908 27 H 0.087 0.913 28 H 0.106 0.894 29 H 0.160 0.840 30 H 0.028 0.972 31 H 0.068 0.932 32 H 0.055 0.945 33 H 0.065 0.935 34 H 0.030 0.970 35 H 0.035 0.965 36 H 0.073 0.927 37 H 0.051 0.949 38 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 6.915 4.017 -10.859 13.486 hybrid contribution 0.777 -1.049 1.437 1.942 sum 7.692 2.968 -9.422 12.520 Atomic orbital electron populations 1.21523 0.93071 1.02102 1.01257 1.22800 0.96084 0.95145 0.83764 0.90638 1.88860 1.40652 1.68202 1.33981 1.23555 0.87442 0.96885 0.94771 1.23847 1.01449 0.98914 0.97841 1.23066 0.91243 0.96340 0.95062 0.89384 1.60649 1.33451 1.33923 1.02051 1.21839 0.96497 0.98049 0.87379 1.18127 0.91706 0.91948 0.92232 1.21473 1.00109 0.96745 0.98043 1.21662 1.00286 0.98565 0.97313 1.21427 0.98103 1.42272 0.94843 0.93682 1.25524 0.95050 0.95353 1.01701 1.69960 1.05093 1.44178 1.35035 0.85858 0.77546 0.78253 0.81378 1.20132 1.21175 1.20116 0.93171 0.91080 0.92896 0.87874 0.90768 0.91295 0.89425 0.83994 0.97191 0.93193 0.94505 0.93507 0.97033 0.96521 0.92663 0.94932 0.93345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.32 8.58 71.98 0.62 -2.70 16 2 C 0.08 2.08 4.06 30.96 0.13 2.20 16 3 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 4 O -0.40 -10.60 11.19 -148.98 -1.67 -12.26 16 5 C 0.05 1.03 7.71 72.67 0.56 1.59 16 6 C -0.18 -4.24 6.85 31.96 0.22 -4.02 16 7 C 0.05 1.46 3.34 45.97 0.15 1.62 16 8 H 0.09 2.35 7.82 -2.39 -0.02 2.33 16 9 N -0.67 -22.04 3.72 -486.14 -1.81 -23.84 16 10 C 0.09 3.61 4.45 86.30 0.38 3.99 16 11 C 0.06 2.85 0.57 -52.93 -0.03 2.82 16 12 C -0.11 -5.07 8.09 71.98 0.58 -4.49 16 13 C -0.12 -5.59 7.92 71.98 0.57 -5.02 16 14 C -0.53 -28.17 8.01 25.60 0.21 -27.97 16 15 H 0.04 2.39 7.74 -2.91 -0.02 2.37 16 16 C 0.02 1.23 5.15 84.66 0.44 1.66 16 17 N -0.90 -50.30 9.35 21.45 0.20 -50.10 16 18 Si 0.94 43.06 29.54 68.60 2.03 45.09 16 19 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 20 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 21 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 22 H 0.05 1.46 7.46 -2.38 -0.02 1.44 16 23 H 0.07 2.05 7.91 -2.39 -0.02 2.03 16 24 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.07 1.74 7.58 -2.39 -0.02 1.73 16 28 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.34 11.40 5.77 -89.69 -0.52 10.88 16 30 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.05 2.02 8.08 -2.39 -0.02 2.00 16 32 H 0.04 1.60 7.60 -2.39 -0.02 1.58 16 33 H 0.05 2.49 6.07 -2.38 -0.01 2.48 16 34 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.05 2.89 6.07 -2.39 -0.01 2.88 16 37 H 0.03 1.32 6.57 -2.39 -0.02 1.31 16 38 H 0.26 13.84 8.31 -92.70 -0.77 13.07 16 Total: -1.00 -56.42 291.97 3.08 -53.34 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: 0.50 Total: 18.09 kcal Atomic # 6 Polarization: -34.13 SS G_CDS: 3.82 Total: -30.30 kcal Atomic # 7 Polarization: -72.34 SS G_CDS: -1.61 Total: -73.95 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: -1.67 Total: -12.26 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -56.42 3.08 -53.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590970552.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.402 kcal (2) G-P(sol) polarization free energy of solvation -56.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds