Wall clock time and date at job start Sun Mar 29 2020 22:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 110.32912 * 2 1 4 4 O 1.44425 * 110.46941 * 237.68955 * 2 1 3 5 5 C 1.44421 * 105.27967 * 200.60615 * 4 2 1 6 6 C 1.54487 * 104.79872 * 40.51065 * 5 4 2 7 7 C 1.54472 * 110.37541 * 122.25150 * 2 1 3 8 8 H 1.09009 * 110.62847 * 24.22028 * 7 2 1 9 9 N 1.46904 * 110.51207 * 261.56729 * 7 2 1 10 10 C 1.46903 * 110.99698 * 158.90235 * 9 7 2 11 11 C 1.52998 * 109.46805 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47354 * 300.00138 * 11 10 9 13 13 C 1.53003 * 109.47027 * 60.00238 * 11 10 9 14 14 C 1.50702 * 109.47296 * 179.97438 * 11 10 9 15 15 H 1.08005 * 119.99681 * 0.02562 * 14 11 10 16 16 C 1.37876 * 120.00510 * 179.97438 * 14 11 10 17 17 N 1.31521 * 119.99726 * 0.02562 * 16 14 11 18 18 Si 1.86793 * 120.00393 * 180.02562 * 16 14 11 19 19 H 1.48502 * 109.47075 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47404 * 120.00022 * 18 16 14 21 21 H 1.48505 * 109.47086 * 240.00366 * 18 16 14 22 22 H 1.08997 * 109.47321 * 297.74798 * 1 2 3 23 23 H 1.08997 * 109.47374 * 57.74737 * 1 2 3 24 24 H 1.08997 * 109.47231 * 177.74593 * 1 2 3 25 25 H 1.08997 * 110.37554 * 281.67915 * 5 4 2 26 26 H 1.09004 * 110.37353 * 159.34062 * 5 4 2 27 27 H 1.09003 * 110.50578 * 94.66973 * 6 5 4 28 28 H 1.08999 * 110.50826 * 217.23509 * 6 5 4 29 29 H 1.00898 * 111.00062 * 282.85583 * 9 7 2 30 30 H 1.08999 * 109.47550 * 299.99490 * 10 9 7 31 31 H 1.09001 * 109.47402 * 60.00217 * 10 9 7 32 32 H 1.08994 * 109.47524 * 60.00015 * 12 11 10 33 33 H 1.09009 * 109.47255 * 179.97438 * 12 11 10 34 34 H 1.09001 * 109.47036 * 299.99766 * 12 11 10 35 35 H 1.08995 * 109.47609 * 59.99796 * 13 11 10 36 36 H 1.09009 * 109.47098 * 179.97438 * 13 11 10 37 37 H 1.09004 * 109.47230 * 299.99784 * 13 11 10 38 38 H 0.96996 * 119.99897 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 8 2.0350 -0.7232 -1.1436 5 6 3.3898 -1.0844 -0.7974 6 6 3.3194 -1.5026 0.6881 7 6 2.0678 -0.7727 1.2247 8 1 1.3293 -1.4917 1.5797 9 7 2.4362 0.1583 2.2996 10 6 2.4660 -0.5244 3.6000 11 6 2.8532 0.4750 4.6919 12 6 4.2368 1.0526 4.3872 13 6 1.8256 1.6078 4.7340 14 6 2.8832 -0.2252 6.0261 15 1 2.6499 -1.2778 6.0888 16 6 3.2095 0.4778 7.1664 17 7 3.4941 1.7595 7.0899 18 14 3.2474 -0.3902 8.8200 19 1 2.8906 -1.8200 8.6368 20 1 4.6105 -0.2901 9.4005 21 1 2.2705 0.2496 9.7374 22 1 -0.3634 0.4784 0.9095 23 1 -0.3634 0.5484 -0.8691 24 1 -0.3633 -1.0268 -0.0404 25 1 4.0538 -0.2287 -0.9197 26 1 3.7285 -1.9193 -1.4110 27 1 3.1988 -2.5824 0.7755 28 1 4.2127 -1.1748 1.2198 29 1 3.3202 0.6040 2.1049 30 1 1.4804 -0.9363 3.8170 31 1 3.1984 -1.3312 3.5702 32 1 4.2147 1.5591 3.4224 33 1 4.5124 1.7650 5.1649 34 1 4.9688 0.2456 4.3573 35 1 0.8399 1.1963 4.9511 36 1 2.1012 2.3196 5.5123 37 1 1.8034 2.1143 3.7691 38 1 3.7241 2.2540 7.8920 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590970553.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:11 Heat of formation + Delta-G solvation = -57.276159 kcal Electronic energy + Delta-G solvation = -16665.337383 eV Core-core repulsion = 14121.284496 eV Total energy + Delta-G solvation = -2544.052887 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.56448 -36.66864 -33.95609 -31.51436 -31.25429 -29.26811 -25.60708 -25.44837 -25.16580 -23.40904 -21.85757 -20.54340 -18.46770 -16.34768 -15.89805 -15.60535 -15.37393 -14.69702 -14.18002 -13.85069 -13.39717 -12.93554 -12.67840 -12.25492 -12.18060 -12.04305 -11.50637 -11.33587 -11.15144 -11.08693 -10.88824 -10.73214 -10.59678 -10.48348 -10.20111 -10.07294 -9.69448 -9.41234 -9.07089 -8.64193 -8.31212 -7.75366 -5.93201 -4.03621 3.28991 3.37528 3.40884 3.99137 4.41319 4.61069 4.75050 5.03857 5.08091 5.32247 5.32483 5.38765 5.55867 5.63522 5.75887 5.87124 5.99649 6.06276 6.19604 6.28652 6.34217 6.37943 6.68853 6.84069 6.90458 7.05586 7.13870 7.35676 7.44817 7.69728 7.73743 7.80936 7.91720 8.18615 8.32453 8.53741 8.98040 9.61649 11.07409 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.047119 B = 0.006069 C = 0.005926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.094521 B = 4612.738112 C = 4723.656276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.078 3.922 3 H 0.074 0.926 4 O -0.380 6.380 5 C 0.049 3.951 6 C -0.188 4.188 7 C 0.060 3.940 8 H 0.087 0.913 9 N -0.675 5.675 10 C 0.076 3.924 11 C 0.068 3.932 12 C -0.132 4.132 13 C -0.120 4.120 14 C -0.506 4.506 15 H 0.052 0.948 16 C 0.065 3.935 17 N -0.885 5.885 18 Si 0.888 3.112 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.285 1.285 22 H 0.077 0.923 23 H 0.056 0.944 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.086 0.914 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.339 0.661 30 H 0.056 0.944 31 H 0.014 0.986 32 H 0.010 0.990 33 H 0.084 0.916 34 H 0.018 0.982 35 H 0.018 0.982 36 H 0.074 0.926 37 H 0.020 0.980 38 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.167 -3.308 -11.650 12.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.020 3.980 3 H 0.092 0.908 4 O -0.299 6.299 5 C -0.028 4.028 6 C -0.228 4.228 7 C -0.051 4.051 8 H 0.105 0.895 9 N -0.307 5.307 10 C -0.052 4.052 11 C 0.067 3.933 12 C -0.190 4.190 13 C -0.177 4.177 14 C -0.545 4.545 15 H 0.070 0.930 16 C -0.136 4.136 17 N -0.524 5.524 18 Si 0.716 3.284 19 H -0.200 1.200 20 H -0.212 1.212 21 H -0.211 1.211 22 H 0.096 0.904 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.104 0.896 27 H 0.091 0.909 28 H 0.096 0.904 29 H 0.159 0.841 30 H 0.075 0.925 31 H 0.032 0.968 32 H 0.029 0.971 33 H 0.102 0.898 34 H 0.038 0.962 35 H 0.037 0.963 36 H 0.093 0.907 37 H 0.039 0.961 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.880 -2.966 -11.630 12.148 hybrid contribution 1.096 -1.057 1.101 1.879 sum -0.784 -4.022 -10.529 11.298 Atomic orbital electron populations 1.21721 0.93104 1.02292 1.02508 1.22996 0.95329 0.95648 0.83987 0.90829 1.89094 1.26920 1.75043 1.38856 1.23281 0.84908 0.99519 0.95101 1.23709 1.00218 1.01975 0.96891 1.23003 0.95830 0.93687 0.92613 0.89505 1.60611 1.37753 1.30508 1.01796 1.22179 0.99117 0.96131 0.87774 1.18104 0.92153 0.91846 0.91151 1.21838 0.98326 1.00191 0.98662 1.21646 0.97093 0.99792 0.99197 1.21147 1.46300 0.95499 0.91567 0.92962 1.24886 0.95176 0.94817 0.98707 1.69844 1.47242 1.07155 1.28122 0.86604 0.77521 0.79824 0.84412 1.19968 1.21157 1.21078 0.90389 0.92479 0.92395 0.92503 0.89618 0.90913 0.90424 0.84114 0.92507 0.96762 0.97111 0.89779 0.96242 0.96273 0.90728 0.96114 0.93227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.52 37.16 0.35 -1.40 16 2 C 0.08 1.10 3.64 -25.96 -0.09 1.00 16 3 H 0.07 1.06 8.06 -51.93 -0.42 0.64 16 4 O -0.38 -5.47 11.35 -35.23 -0.40 -5.87 16 5 C 0.05 0.60 7.63 37.94 0.29 0.88 16 6 C -0.19 -2.48 6.68 -25.16 -0.17 -2.65 16 7 C 0.06 0.90 2.96 -66.15 -0.20 0.70 16 8 H 0.09 1.33 7.61 -51.92 -0.40 0.94 16 9 N -0.67 -11.67 5.46 -105.07 -0.57 -12.24 16 10 C 0.08 1.55 4.43 -3.82 -0.02 1.54 16 11 C 0.07 1.62 0.57 -155.66 -0.09 1.53 16 12 C -0.13 -3.07 7.92 37.16 0.29 -2.78 16 13 C -0.12 -2.88 8.09 37.16 0.30 -2.58 16 14 C -0.51 -13.52 8.01 -34.44 -0.28 -13.79 16 15 H 0.05 1.40 7.74 -52.48 -0.41 0.99 16 16 C 0.06 1.75 5.15 -17.82 -0.09 1.66 16 17 N -0.88 -24.35 9.35 55.43 0.52 -23.83 16 18 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 19 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 23 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 24 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 27 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.08 1.05 7.68 -51.93 -0.40 0.65 16 29 H 0.34 5.81 6.29 -39.29 -0.25 5.57 16 30 H 0.06 1.19 8.08 -51.93 -0.42 0.77 16 31 H 0.01 0.29 8.12 -51.93 -0.42 -0.13 16 32 H 0.01 0.21 6.57 -51.93 -0.34 -0.13 16 33 H 0.08 2.18 6.07 -51.92 -0.32 1.86 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 1.98 6.07 -51.92 -0.32 1.66 16 37 H 0.02 0.45 7.60 -51.93 -0.39 0.06 16 38 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 294.97 15.07 4.45 4.45 Total: -1.00 -27.16 294.97 -7.31 -34.47 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -6.59 Total: 2.94 kcal Atomic # 6 Polarization: -16.19 SS G_CDS: 0.31 Total: -15.89 kcal Atomic # 7 Polarization: -36.02 SS G_CDS: -0.06 Total: -36.08 kcal Atomic # 8 Polarization: -5.47 SS G_CDS: -0.40 Total: -5.87 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -27.16 -7.31 -34.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590970553.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.803 kcal (2) G-P(sol) polarization free energy of solvation -27.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds