Wall clock time and date at job start Sun Mar 29 2020 22:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 110.32912 * 2 1 4 4 O 1.44425 * 110.46941 * 237.68955 * 2 1 3 5 5 C 1.44421 * 105.27967 * 200.60615 * 4 2 1 6 6 C 1.54487 * 104.79872 * 40.51065 * 5 4 2 7 7 C 1.54472 * 110.37541 * 122.25150 * 2 1 3 8 8 H 1.09009 * 110.62847 * 24.22028 * 7 2 1 9 9 N 1.46904 * 110.51207 * 261.56729 * 7 2 1 10 10 C 1.46903 * 110.99698 * 158.90235 * 9 7 2 11 11 C 1.52998 * 109.46805 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47354 * 300.00138 * 11 10 9 13 13 C 1.53003 * 109.47027 * 60.00238 * 11 10 9 14 14 C 1.50702 * 109.47296 * 179.97438 * 11 10 9 15 15 H 1.08005 * 119.99681 * 0.02562 * 14 11 10 16 16 C 1.37876 * 120.00510 * 179.97438 * 14 11 10 17 17 N 1.31521 * 119.99726 * 0.02562 * 16 14 11 18 18 Si 1.86793 * 120.00393 * 180.02562 * 16 14 11 19 19 H 1.48502 * 109.47075 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47404 * 120.00022 * 18 16 14 21 21 H 1.48505 * 109.47086 * 240.00366 * 18 16 14 22 22 H 1.08997 * 109.47321 * 297.74798 * 1 2 3 23 23 H 1.08997 * 109.47374 * 57.74737 * 1 2 3 24 24 H 1.08997 * 109.47231 * 177.74593 * 1 2 3 25 25 H 1.08997 * 110.37554 * 281.67915 * 5 4 2 26 26 H 1.09004 * 110.37353 * 159.34062 * 5 4 2 27 27 H 1.09003 * 110.50578 * 94.66973 * 6 5 4 28 28 H 1.08999 * 110.50826 * 217.23509 * 6 5 4 29 29 H 1.00898 * 111.00062 * 282.85583 * 9 7 2 30 30 H 1.08999 * 109.47550 * 299.99490 * 10 9 7 31 31 H 1.09001 * 109.47402 * 60.00217 * 10 9 7 32 32 H 1.08994 * 109.47524 * 60.00015 * 12 11 10 33 33 H 1.09009 * 109.47255 * 179.97438 * 12 11 10 34 34 H 1.09001 * 109.47036 * 299.99766 * 12 11 10 35 35 H 1.08995 * 109.47609 * 59.99796 * 13 11 10 36 36 H 1.09009 * 109.47098 * 179.97438 * 13 11 10 37 37 H 1.09004 * 109.47230 * 299.99784 * 13 11 10 38 38 H 0.96996 * 119.99897 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 8 2.0350 -0.7232 -1.1436 5 6 3.3898 -1.0844 -0.7974 6 6 3.3194 -1.5026 0.6881 7 6 2.0678 -0.7727 1.2247 8 1 1.3293 -1.4917 1.5797 9 7 2.4362 0.1583 2.2996 10 6 2.4660 -0.5244 3.6000 11 6 2.8532 0.4750 4.6919 12 6 4.2368 1.0526 4.3872 13 6 1.8256 1.6078 4.7340 14 6 2.8832 -0.2252 6.0261 15 1 2.6499 -1.2778 6.0888 16 6 3.2095 0.4778 7.1664 17 7 3.4941 1.7595 7.0899 18 14 3.2474 -0.3902 8.8200 19 1 2.8906 -1.8200 8.6368 20 1 4.6105 -0.2901 9.4005 21 1 2.2705 0.2496 9.7374 22 1 -0.3634 0.4784 0.9095 23 1 -0.3634 0.5484 -0.8691 24 1 -0.3633 -1.0268 -0.0404 25 1 4.0538 -0.2287 -0.9197 26 1 3.7285 -1.9193 -1.4110 27 1 3.1988 -2.5824 0.7755 28 1 4.2127 -1.1748 1.2198 29 1 3.3202 0.6040 2.1049 30 1 1.4804 -0.9363 3.8170 31 1 3.1984 -1.3312 3.5702 32 1 4.2147 1.5591 3.4224 33 1 4.5124 1.7650 5.1649 34 1 4.9688 0.2456 4.3573 35 1 0.8399 1.1963 4.9511 36 1 2.1012 2.3196 5.5123 37 1 1.8034 2.1143 3.7691 38 1 3.7241 2.2540 7.8920 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590970553.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:10 Heat of formation + Delta-G solvation = -73.658010 kcal Electronic energy + Delta-G solvation = -16666.047753 eV Core-core repulsion = 14121.284496 eV Total energy + Delta-G solvation = -2544.763258 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.69285 -38.34839 -35.51606 -33.18220 -32.39678 -30.65160 -27.50443 -27.25833 -26.65877 -24.88497 -22.93693 -21.70737 -20.32389 -17.99997 -17.20992 -17.05461 -16.56811 -16.33052 -15.60151 -15.26075 -14.92174 -14.35138 -14.18570 -13.90491 -13.43394 -13.25444 -13.11000 -12.97641 -12.71707 -12.56845 -12.45878 -12.24419 -12.14555 -12.01684 -11.95757 -11.70069 -11.30558 -10.94510 -10.68122 -10.59305 -10.34548 -9.17015 -7.97054 -6.13789 1.40764 1.44494 1.53401 2.46146 2.94578 3.25320 3.32786 3.66854 3.96613 4.03648 4.22201 4.31267 4.51011 4.53361 4.63743 4.68913 4.75380 4.88327 4.90055 4.97244 5.02715 5.05242 5.13318 5.17985 5.29008 5.31941 5.43498 5.54194 5.70383 5.77259 5.82619 6.18002 6.27044 6.34650 6.49248 6.61932 6.96120 7.54072 9.01269 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.047119 B = 0.006069 C = 0.005926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.094521 B = 4612.738112 C = 4723.656276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.081 3.919 3 H 0.071 0.929 4 O -0.392 6.392 5 C 0.048 3.952 6 C -0.185 4.185 7 C 0.058 3.942 8 H 0.081 0.919 9 N -0.674 5.674 10 C 0.093 3.907 11 C 0.059 3.941 12 C -0.121 4.121 13 C -0.107 4.107 14 C -0.526 4.526 15 H 0.044 0.956 16 C 0.023 3.977 17 N -0.904 5.904 18 Si 0.943 3.057 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.283 1.283 22 H 0.072 0.928 23 H 0.067 0.933 24 H 0.060 0.940 25 H 0.066 0.934 26 H 0.106 0.894 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.341 0.659 30 H 0.048 0.952 31 H 0.011 0.989 32 H 0.034 0.966 33 H 0.055 0.945 34 H 0.017 0.983 35 H 0.010 0.990 36 H 0.047 0.953 37 H 0.035 0.965 38 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.062 -3.931 -12.667 13.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.023 3.977 3 H 0.089 0.911 4 O -0.311 6.311 5 C -0.028 4.028 6 C -0.224 4.224 7 C -0.053 4.053 8 H 0.099 0.901 9 N -0.306 5.306 10 C -0.036 4.036 11 C 0.058 3.942 12 C -0.179 4.179 13 C -0.164 4.164 14 C -0.564 4.564 15 H 0.062 0.938 16 C -0.176 4.176 17 N -0.543 5.543 18 Si 0.770 3.230 19 H -0.197 1.197 20 H -0.209 1.209 21 H -0.210 1.210 22 H 0.091 0.909 23 H 0.086 0.914 24 H 0.079 0.921 25 H 0.084 0.916 26 H 0.125 0.875 27 H 0.097 0.903 28 H 0.093 0.907 29 H 0.161 0.839 30 H 0.066 0.934 31 H 0.029 0.971 32 H 0.053 0.947 33 H 0.074 0.926 34 H 0.036 0.964 35 H 0.030 0.970 36 H 0.066 0.934 37 H 0.054 0.946 38 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -1.775 -3.594 -12.662 13.282 hybrid contribution 1.064 -0.861 1.380 1.943 sum -0.711 -4.455 -11.282 12.151 Atomic orbital electron populations 1.21704 0.92268 1.02657 1.02780 1.22953 0.96040 0.95262 0.83461 0.91126 1.89089 1.28051 1.75086 1.38883 1.23435 0.84139 1.00701 0.94548 1.23653 0.99040 1.02161 0.97578 1.23030 0.96619 0.93500 0.92157 0.90056 1.60508 1.37863 1.30993 1.01228 1.21811 0.98321 0.95083 0.88379 1.18153 0.92387 0.92304 0.91310 1.21667 0.97851 0.99503 0.98887 1.21484 0.96645 0.99347 0.98972 1.21471 1.46312 0.95376 0.93275 0.93756 1.25521 0.95107 0.95441 1.01569 1.69972 1.47594 1.08024 1.28696 0.85740 0.77427 0.78906 0.80913 1.19702 1.20866 1.20956 0.90884 0.91366 0.92081 0.91580 0.87539 0.90266 0.90666 0.83880 0.93369 0.97060 0.94711 0.92621 0.96357 0.97049 0.93376 0.94568 0.93331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.22 9.52 71.98 0.69 -2.54 16 2 C 0.08 2.11 3.64 31.09 0.11 2.22 16 3 H 0.07 1.89 8.06 -2.39 -0.02 1.87 16 4 O -0.39 -10.34 11.35 -148.98 -1.69 -12.03 16 5 C 0.05 1.04 7.63 72.49 0.55 1.60 16 6 C -0.18 -4.46 6.68 31.61 0.21 -4.25 16 7 C 0.06 1.62 2.96 45.93 0.14 1.76 16 8 H 0.08 2.38 7.61 -2.38 -0.02 2.36 16 9 N -0.67 -22.29 5.46 -486.33 -2.66 -24.94 16 10 C 0.09 3.71 4.43 86.30 0.38 4.09 16 11 C 0.06 2.78 0.57 -52.93 -0.03 2.75 16 12 C -0.12 -5.55 7.92 71.98 0.57 -4.98 16 13 C -0.11 -5.11 8.09 71.98 0.58 -4.53 16 14 C -0.53 -28.07 8.01 25.60 0.21 -27.87 16 15 H 0.04 2.38 7.74 -2.91 -0.02 2.35 16 16 C 0.02 1.22 5.15 84.65 0.44 1.65 16 17 N -0.90 -50.08 9.35 21.45 0.20 -49.88 16 18 Si 0.94 43.06 29.54 68.60 2.03 45.09 16 19 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 20 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 21 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 22 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 23 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 24 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.11 1.86 8.14 -2.38 -0.02 1.84 16 27 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.07 1.87 7.68 -2.39 -0.02 1.85 16 29 H 0.34 11.04 6.29 -89.70 -0.56 10.48 16 30 H 0.05 1.99 8.08 -2.39 -0.02 1.97 16 31 H 0.01 0.45 8.12 -2.39 -0.02 0.43 16 32 H 0.03 1.38 6.57 -2.39 -0.02 1.36 16 33 H 0.05 2.88 6.07 -2.38 -0.01 2.87 16 34 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.05 2.56 6.07 -2.38 -0.01 2.54 16 37 H 0.04 1.57 7.60 -2.38 -0.02 1.55 16 38 H 0.26 13.70 8.31 -92.71 -0.77 12.93 16 Total: -1.00 -56.35 294.97 2.18 -54.17 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: 0.45 Total: 17.68 kcal Atomic # 6 Polarization: -33.93 SS G_CDS: 3.84 Total: -30.09 kcal Atomic # 7 Polarization: -72.37 SS G_CDS: -2.46 Total: -74.82 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: -1.69 Total: -12.03 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -56.35 2.18 -54.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590970553.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.484 kcal (2) G-P(sol) polarization free energy of solvation -56.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds