Wall clock time and date at job start Sun Mar 29 2020 22:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.87003 * 2 1 4 4 O 1.43746 * 109.87960 * 121.15989 * 2 1 3 5 5 C 1.44478 * 106.98554 * 145.93890 * 4 2 1 6 6 C 1.54998 * 103.44508 * 319.94809 * 5 4 2 7 7 C 1.54100 * 109.87953 * 238.99576 * 2 1 3 8 8 H 1.08998 * 110.49031 * 357.21976 * 7 2 1 9 9 N 1.46896 * 110.48913 * 119.87155 * 7 2 1 10 10 C 1.46909 * 110.99811 * 201.21829 * 9 7 2 11 11 C 1.53004 * 109.46668 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47013 * 299.99766 * 11 10 9 13 13 C 1.53001 * 109.47261 * 60.00392 * 11 10 9 14 14 C 1.50703 * 109.46402 * 180.02562 * 11 10 9 15 15 H 1.07991 * 120.00351 * 359.97438 * 14 11 10 16 16 C 1.37881 * 119.99460 * 179.97438 * 14 11 10 17 17 N 1.31512 * 120.00356 * 0.02562 * 16 14 11 18 18 Si 1.86799 * 119.99715 * 179.97438 * 16 14 11 19 19 H 1.48499 * 109.47115 * 60.00351 * 18 16 14 20 20 H 1.48505 * 109.47027 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47600 * 300.00057 * 18 16 14 22 22 H 1.09005 * 109.46957 * 181.00600 * 1 2 3 23 23 H 1.08998 * 109.47031 * 301.00542 * 1 2 3 24 24 H 1.09005 * 109.46795 * 61.00670 * 1 2 3 25 25 H 1.08997 * 110.65764 * 201.45460 * 5 4 2 26 26 H 1.08997 * 110.61802 * 78.42806 * 5 4 2 27 27 H 1.09002 * 110.90913 * 278.80261 * 6 5 4 28 28 H 1.08997 * 110.90321 * 155.23378 * 6 5 4 29 29 H 1.00904 * 111.00272 * 77.26397 * 9 7 2 30 30 H 1.08997 * 109.46910 * 299.99917 * 10 9 7 31 31 H 1.09002 * 109.46613 * 59.99883 * 10 9 7 32 32 H 1.08999 * 109.46920 * 60.01156 * 12 11 10 33 33 H 1.09006 * 109.46559 * 180.02562 * 12 11 10 34 34 H 1.08998 * 109.47353 * 300.00417 * 12 11 10 35 35 H 1.08993 * 109.47049 * 59.99582 * 13 11 10 36 36 H 1.08993 * 109.46890 * 179.97438 * 13 11 10 37 37 H 1.08998 * 109.46687 * 299.99516 * 13 11 10 38 38 H 0.97001 * 120.00233 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 8 2.0188 -0.6995 1.1568 5 6 3.2388 -1.3657 0.7629 6 6 2.9196 -1.8905 -0.6601 7 6 2.0540 -0.7465 -1.2421 8 1 1.2247 -1.1524 -1.8214 9 7 2.8733 0.1472 -2.0715 10 6 2.9598 -0.3478 -3.4519 11 6 3.8186 0.6074 -4.2833 12 6 3.1830 1.9991 -4.2794 13 6 5.2228 0.6862 -3.6809 14 6 3.9067 0.0998 -5.6995 15 1 3.4013 -0.8128 -5.9786 16 6 4.6328 0.8008 -6.6390 17 7 5.2488 1.9119 -6.2991 18 14 4.7427 0.1714 -8.3943 19 1 3.3798 0.0942 -8.9788 20 1 5.5751 1.0991 -9.2017 21 1 5.3602 -1.1791 -8.3983 22 1 -0.3633 -1.0276 0.0180 23 1 -0.3633 0.5294 0.8808 24 1 -0.3633 0.4981 -0.8989 25 1 3.4597 -2.1934 1.4367 26 1 4.0693 -0.6604 0.7346 27 1 2.3540 -2.8212 -0.6137 28 1 3.8329 -2.0211 -1.2405 29 1 3.7922 0.2692 -1.6728 30 1 3.4122 -1.3395 -3.4546 31 1 1.9594 -0.4036 -3.8812 32 1 3.1189 2.3664 -3.2552 33 1 3.7946 2.6794 -4.8721 34 1 2.1826 1.9429 -4.7086 35 1 5.6755 -0.3052 -3.6837 36 1 5.8346 1.3663 -4.2734 37 1 5.1586 1.0535 -2.6567 38 1 5.7599 2.4048 -6.9600 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590970554.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:12 Heat of formation + Delta-G solvation = -57.369157 kcal Electronic energy + Delta-G solvation = -16690.626513 eV Core-core repulsion = 14146.569593 eV Total energy + Delta-G solvation = -2544.056920 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.60724 -36.63719 -33.91989 -31.56670 -31.22280 -29.29088 -25.60233 -25.44769 -25.15650 -23.46514 -21.84994 -20.53070 -18.44812 -16.42373 -15.82907 -15.61703 -15.36465 -14.70795 -14.15266 -13.94206 -13.19662 -12.96027 -12.74976 -12.37236 -12.21317 -12.05380 -11.41747 -11.34648 -11.19789 -11.05247 -10.86870 -10.75336 -10.64049 -10.51384 -10.19776 -10.06961 -9.57450 -9.41175 -9.08258 -8.65838 -8.30716 -7.77687 -5.92862 -4.03567 3.31392 3.36423 3.38863 3.97667 4.40455 4.58345 4.74972 5.06981 5.09685 5.32542 5.34252 5.36835 5.52276 5.63454 5.79223 5.81326 5.97075 6.09152 6.17380 6.28969 6.29755 6.38380 6.68541 6.85500 6.95499 7.06565 7.13740 7.35780 7.44709 7.69438 7.73562 7.80768 7.91001 8.18556 8.32307 8.53560 8.97654 9.61562 11.07660 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.047439 B = 0.006073 C = 0.005996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.088882 B = 4609.371510 C = 4668.282725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.077 3.923 3 H 0.079 0.921 4 O -0.382 6.382 5 C 0.050 3.950 6 C -0.189 4.189 7 C 0.058 3.942 8 H 0.088 0.912 9 N -0.676 5.676 10 C 0.075 3.925 11 C 0.069 3.931 12 C -0.120 4.120 13 C -0.132 4.132 14 C -0.508 4.508 15 H 0.051 0.949 16 C 0.066 3.934 17 N -0.885 5.885 18 Si 0.889 3.111 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.279 1.279 22 H 0.056 0.944 23 H 0.058 0.942 24 H 0.072 0.928 25 H 0.087 0.913 26 H 0.059 0.941 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.339 0.661 30 H 0.014 0.986 31 H 0.057 0.943 32 H 0.020 0.980 33 H 0.074 0.926 34 H 0.018 0.982 35 H 0.018 0.982 36 H 0.084 0.916 37 H 0.010 0.990 38 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.448 -4.512 10.389 12.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.019 3.981 3 H 0.097 0.903 4 O -0.302 6.302 5 C -0.027 4.027 6 C -0.228 4.228 7 C -0.053 4.053 8 H 0.106 0.894 9 N -0.307 5.307 10 C -0.053 4.053 11 C 0.068 3.932 12 C -0.177 4.177 13 C -0.190 4.190 14 C -0.547 4.547 15 H 0.069 0.931 16 C -0.135 4.135 17 N -0.523 5.523 18 Si 0.717 3.283 19 H -0.204 1.204 20 H -0.213 1.213 21 H -0.205 1.205 22 H 0.075 0.925 23 H 0.077 0.923 24 H 0.091 0.909 25 H 0.105 0.895 26 H 0.078 0.922 27 H 0.093 0.907 28 H 0.099 0.901 29 H 0.159 0.841 30 H 0.033 0.967 31 H 0.075 0.925 32 H 0.039 0.961 33 H 0.093 0.907 34 H 0.037 0.963 35 H 0.038 0.962 36 H 0.102 0.898 37 H 0.029 0.971 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.949 -3.922 10.357 12.131 hybrid contribution 0.834 -1.219 -1.153 1.873 sum -4.115 -5.141 9.205 11.318 Atomic orbital electron populations 1.21861 0.93896 1.02172 1.02319 1.22850 0.94757 0.96493 0.83990 0.90284 1.88848 1.39597 1.67880 1.33833 1.23468 0.87935 0.96122 0.95153 1.23846 1.01465 1.00117 0.97391 1.22995 0.96955 0.90814 0.94554 0.89351 1.60684 1.19096 1.47605 1.03310 1.22192 1.00158 0.96637 0.86280 1.18093 0.90557 0.91932 0.92591 1.21646 0.98620 0.99499 0.97964 1.21838 1.00566 0.99816 0.96809 1.21068 1.31113 1.08595 0.93940 0.93063 1.24881 0.95406 0.94873 0.98356 1.69819 1.33018 1.15687 1.33823 0.86719 0.77988 0.78595 0.85000 1.20389 1.21330 1.20480 0.92467 0.92317 0.90946 0.89479 0.92245 0.90707 0.90134 0.84146 0.96741 0.92494 0.96133 0.90712 0.96277 0.96237 0.89771 0.97116 0.93096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.36 37.16 0.35 -1.42 16 2 C 0.08 1.09 3.86 -26.16 -0.10 0.98 16 3 H 0.08 1.19 7.93 -51.93 -0.41 0.78 16 4 O -0.38 -5.55 11.19 -35.23 -0.39 -5.95 16 5 C 0.05 0.62 7.73 38.21 0.30 0.92 16 6 C -0.19 -2.47 6.57 -24.72 -0.16 -2.64 16 7 C 0.06 0.86 2.97 -66.18 -0.20 0.66 16 8 H 0.09 1.32 7.44 -51.93 -0.39 0.93 16 9 N -0.68 -11.75 5.37 -105.10 -0.56 -12.32 16 10 C 0.08 1.54 4.43 -3.82 -0.02 1.52 16 11 C 0.07 1.64 0.57 -155.66 -0.09 1.55 16 12 C -0.12 -2.89 8.09 37.16 0.30 -2.59 16 13 C -0.13 -3.08 7.92 37.16 0.29 -2.79 16 14 C -0.51 -13.57 8.01 -34.44 -0.28 -13.85 16 15 H 0.05 1.36 7.74 -52.49 -0.41 0.96 16 16 C 0.07 1.77 5.15 -17.82 -0.09 1.68 16 17 N -0.88 -24.37 9.35 55.43 0.52 -23.85 16 18 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.08 1.10 7.85 -51.93 -0.41 0.69 16 29 H 0.34 5.88 6.52 -39.29 -0.26 5.62 16 30 H 0.01 0.29 7.95 -51.93 -0.41 -0.12 16 31 H 0.06 1.19 8.08 -51.93 -0.42 0.77 16 32 H 0.02 0.45 7.60 -51.93 -0.39 0.05 16 33 H 0.07 1.98 6.07 -51.93 -0.32 1.67 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.08 2.18 6.07 -51.93 -0.32 1.87 16 37 H 0.01 0.21 6.57 -51.93 -0.34 -0.13 16 38 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 294.72 15.07 4.44 4.44 Total: -1.00 -27.16 294.72 -7.30 -34.45 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -6.58 Total: 3.21 kcal Atomic # 6 Polarization: -16.26 SS G_CDS: 0.30 Total: -15.96 kcal Atomic # 7 Polarization: -36.12 SS G_CDS: -0.05 Total: -36.17 kcal Atomic # 8 Polarization: -5.55 SS G_CDS: -0.39 Total: -5.95 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -27.16 -7.30 -34.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590970554.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.914 kcal (2) G-P(sol) polarization free energy of solvation -27.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds