Wall clock time and date at job start Sun Mar 29 2020 22:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.87003 * 2 1 4 4 O 1.43746 * 109.87960 * 121.15989 * 2 1 3 5 5 C 1.44478 * 106.98554 * 145.93890 * 4 2 1 6 6 C 1.54998 * 103.44508 * 319.94809 * 5 4 2 7 7 C 1.54100 * 109.87953 * 238.99576 * 2 1 3 8 8 H 1.08998 * 110.49031 * 357.21976 * 7 2 1 9 9 N 1.46896 * 110.48913 * 119.87155 * 7 2 1 10 10 C 1.46909 * 110.99811 * 201.21829 * 9 7 2 11 11 C 1.53004 * 109.46668 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47013 * 299.99766 * 11 10 9 13 13 C 1.53001 * 109.47261 * 60.00392 * 11 10 9 14 14 C 1.50703 * 109.46402 * 180.02562 * 11 10 9 15 15 H 1.07991 * 120.00351 * 359.97438 * 14 11 10 16 16 C 1.37881 * 119.99460 * 179.97438 * 14 11 10 17 17 N 1.31512 * 120.00356 * 0.02562 * 16 14 11 18 18 Si 1.86799 * 119.99715 * 179.97438 * 16 14 11 19 19 H 1.48499 * 109.47115 * 60.00351 * 18 16 14 20 20 H 1.48505 * 109.47027 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47600 * 300.00057 * 18 16 14 22 22 H 1.09005 * 109.46957 * 181.00600 * 1 2 3 23 23 H 1.08998 * 109.47031 * 301.00542 * 1 2 3 24 24 H 1.09005 * 109.46795 * 61.00670 * 1 2 3 25 25 H 1.08997 * 110.65764 * 201.45460 * 5 4 2 26 26 H 1.08997 * 110.61802 * 78.42806 * 5 4 2 27 27 H 1.09002 * 110.90913 * 278.80261 * 6 5 4 28 28 H 1.08997 * 110.90321 * 155.23378 * 6 5 4 29 29 H 1.00904 * 111.00272 * 77.26397 * 9 7 2 30 30 H 1.08997 * 109.46910 * 299.99917 * 10 9 7 31 31 H 1.09002 * 109.46613 * 59.99883 * 10 9 7 32 32 H 1.08999 * 109.46920 * 60.01156 * 12 11 10 33 33 H 1.09006 * 109.46559 * 180.02562 * 12 11 10 34 34 H 1.08998 * 109.47353 * 300.00417 * 12 11 10 35 35 H 1.08993 * 109.47049 * 59.99582 * 13 11 10 36 36 H 1.08993 * 109.46890 * 179.97438 * 13 11 10 37 37 H 1.08998 * 109.46687 * 299.99516 * 13 11 10 38 38 H 0.97001 * 120.00233 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 8 2.0188 -0.6995 1.1568 5 6 3.2388 -1.3657 0.7629 6 6 2.9196 -1.8905 -0.6601 7 6 2.0540 -0.7465 -1.2421 8 1 1.2247 -1.1524 -1.8214 9 7 2.8733 0.1472 -2.0715 10 6 2.9598 -0.3478 -3.4519 11 6 3.8186 0.6074 -4.2833 12 6 3.1830 1.9991 -4.2794 13 6 5.2228 0.6862 -3.6809 14 6 3.9067 0.0998 -5.6995 15 1 3.4013 -0.8128 -5.9786 16 6 4.6328 0.8008 -6.6390 17 7 5.2488 1.9119 -6.2991 18 14 4.7427 0.1714 -8.3943 19 1 3.3798 0.0942 -8.9788 20 1 5.5751 1.0991 -9.2017 21 1 5.3602 -1.1791 -8.3983 22 1 -0.3633 -1.0276 0.0180 23 1 -0.3633 0.5294 0.8808 24 1 -0.3633 0.4981 -0.8989 25 1 3.4597 -2.1934 1.4367 26 1 4.0693 -0.6604 0.7346 27 1 2.3540 -2.8212 -0.6137 28 1 3.8329 -2.0211 -1.2405 29 1 3.7922 0.2692 -1.6728 30 1 3.4122 -1.3395 -3.4546 31 1 1.9594 -0.4036 -3.8812 32 1 3.1189 2.3664 -3.2552 33 1 3.7946 2.6794 -4.8721 34 1 2.1826 1.9429 -4.7086 35 1 5.6755 -0.3052 -3.6837 36 1 5.8346 1.3663 -4.2734 37 1 5.1586 1.0535 -2.6567 38 1 5.7599 2.4048 -6.9600 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590970554.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:12 Heat of formation + Delta-G solvation = -73.722485 kcal Electronic energy + Delta-G solvation = -16691.335646 eV Core-core repulsion = 14146.569593 eV Total energy + Delta-G solvation = -2544.766054 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.74349 -38.32372 -35.47636 -33.19202 -32.39575 -30.67490 -27.51099 -27.26140 -26.64245 -24.91607 -22.95664 -21.68934 -20.30306 -18.02689 -17.27983 -16.90778 -16.66284 -16.32802 -15.57320 -15.35915 -14.84475 -14.35724 -14.10543 -13.88028 -13.54972 -13.24496 -13.11237 -12.97231 -12.71507 -12.58091 -12.45473 -12.24304 -12.15181 -11.98982 -11.95396 -11.76863 -11.30362 -10.89797 -10.63865 -10.60529 -10.33997 -9.19576 -7.96615 -6.13687 1.43621 1.44656 1.51199 2.46427 2.94324 3.25549 3.27861 3.66793 3.97175 4.05563 4.23168 4.31018 4.49270 4.54963 4.61769 4.69833 4.76395 4.86779 4.88287 4.95814 5.03897 5.05042 5.15919 5.17933 5.28305 5.29666 5.42868 5.53939 5.69998 5.76960 5.88713 6.17292 6.26945 6.34452 6.48792 6.60676 6.95914 7.54100 9.01373 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.047439 B = 0.006073 C = 0.005996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.088882 B = 4609.371510 C = 4668.282725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.079 3.921 3 H 0.068 0.932 4 O -0.393 6.393 5 C 0.048 3.952 6 C -0.183 4.183 7 C 0.056 3.944 8 H 0.088 0.912 9 N -0.677 5.677 10 C 0.092 3.908 11 C 0.059 3.941 12 C -0.106 4.106 13 C -0.121 4.121 14 C -0.528 4.528 15 H 0.045 0.955 16 C 0.023 3.977 17 N -0.904 5.904 18 Si 0.943 3.057 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.275 1.275 22 H 0.063 0.937 23 H 0.066 0.934 24 H 0.073 0.927 25 H 0.110 0.890 26 H 0.061 0.939 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.340 0.660 30 H 0.013 0.987 31 H 0.049 0.951 32 H 0.034 0.966 33 H 0.048 0.952 34 H 0.010 0.990 35 H 0.018 0.982 36 H 0.055 0.945 37 H 0.033 0.967 38 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.875 -5.436 11.172 13.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.021 3.979 3 H 0.086 0.914 4 O -0.313 6.313 5 C -0.028 4.028 6 C -0.222 4.222 7 C -0.055 4.055 8 H 0.106 0.894 9 N -0.308 5.308 10 C -0.037 4.037 11 C 0.059 3.941 12 C -0.164 4.164 13 C -0.179 4.179 14 C -0.567 4.567 15 H 0.064 0.936 16 C -0.176 4.176 17 N -0.543 5.543 18 Si 0.770 3.230 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.201 1.201 22 H 0.082 0.918 23 H 0.085 0.915 24 H 0.092 0.908 25 H 0.128 0.872 26 H 0.079 0.921 27 H 0.105 0.895 28 H 0.093 0.907 29 H 0.159 0.841 30 H 0.031 0.969 31 H 0.068 0.932 32 H 0.053 0.947 33 H 0.066 0.934 34 H 0.030 0.970 35 H 0.037 0.963 36 H 0.074 0.926 37 H 0.051 0.949 38 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -5.381 -4.853 11.153 13.301 hybrid contribution 0.963 -0.926 -1.354 1.903 sum -4.418 -5.780 9.799 12.204 Atomic orbital electron populations 1.21839 0.92498 1.02800 1.02781 1.22804 0.95870 0.95716 0.83533 0.91436 1.88844 1.40387 1.68047 1.34030 1.23616 0.87271 0.96738 0.95179 1.23787 1.00971 0.99950 0.97541 1.23041 0.96784 0.91189 0.94480 0.89381 1.60590 1.19398 1.48541 1.02282 1.21827 0.98802 0.95560 0.87482 1.18146 0.91483 0.92309 0.92177 1.21483 0.97504 0.99336 0.98113 1.21667 0.99674 0.99049 0.97523 1.21417 1.31049 1.08511 0.95691 0.93637 1.25527 0.95320 0.95138 1.01630 1.69956 1.33337 1.16378 1.34608 0.85850 0.77895 0.78130 0.81112 1.20155 1.21152 1.20063 0.91769 0.91513 0.90846 0.87223 0.92115 0.89465 0.90657 0.84058 0.96907 0.93224 0.94731 0.93354 0.97035 0.96312 0.92613 0.94856 0.93311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 9.36 71.98 0.67 -2.50 16 2 C 0.08 2.07 3.86 30.97 0.12 2.19 16 3 H 0.07 1.93 7.93 -2.39 -0.02 1.92 16 4 O -0.39 -10.54 11.19 -148.98 -1.67 -12.21 16 5 C 0.05 1.08 7.73 72.67 0.56 1.64 16 6 C -0.18 -4.38 6.57 31.90 0.21 -4.17 16 7 C 0.06 1.55 2.97 45.91 0.14 1.69 16 8 H 0.09 2.46 7.44 -2.39 -0.02 2.44 16 9 N -0.68 -22.57 5.37 -486.44 -2.61 -25.18 16 10 C 0.09 3.67 4.43 86.30 0.38 4.05 16 11 C 0.06 2.81 0.57 -52.93 -0.03 2.78 16 12 C -0.11 -5.14 8.09 71.98 0.58 -4.55 16 13 C -0.12 -5.58 7.92 71.98 0.57 -5.01 16 14 C -0.53 -28.16 8.01 25.60 0.21 -27.95 16 15 H 0.05 2.42 7.74 -2.92 -0.02 2.39 16 16 C 0.02 1.24 5.15 84.66 0.44 1.67 16 17 N -0.90 -50.18 9.35 21.45 0.20 -49.98 16 18 Si 0.94 42.96 29.54 68.60 2.03 44.99 16 19 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 20 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 21 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 22 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 23 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 24 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 25 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 26 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.07 1.90 7.85 -2.39 -0.02 1.89 16 29 H 0.34 11.21 6.52 -89.69 -0.59 10.63 16 30 H 0.01 0.51 7.95 -2.39 -0.02 0.49 16 31 H 0.05 2.03 8.08 -2.39 -0.02 2.02 16 32 H 0.03 1.51 7.60 -2.39 -0.02 1.50 16 33 H 0.05 2.58 6.07 -2.38 -0.01 2.56 16 34 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.05 2.90 6.07 -2.39 -0.01 2.88 16 37 H 0.03 1.34 6.57 -2.39 -0.02 1.32 16 38 H 0.26 13.81 8.31 -92.71 -0.77 13.04 16 Total: -1.00 -56.39 294.72 2.23 -54.16 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: 0.43 Total: 18.38 kcal Atomic # 6 Polarization: -34.02 SS G_CDS: 3.85 Total: -30.17 kcal Atomic # 7 Polarization: -72.74 SS G_CDS: -2.41 Total: -75.15 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: -1.67 Total: -12.21 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -56.39 2.23 -54.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590970554.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.559 kcal (2) G-P(sol) polarization free energy of solvation -56.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds