Wall clock time and date at job start Sun Mar 29 2020 21:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 114.00258 * 2 1 4 4 C 1.53785 * 113.69063 * 110.93650 * 3 2 1 5 5 C 1.53779 * 87.08093 * 139.99216 * 4 3 2 6 6 N 1.46900 * 113.69049 * 220.00567 * 5 4 3 7 7 C 1.46895 * 111.00037 * 252.53571 * 6 5 4 8 8 C 1.53001 * 109.47241 * 180.02562 * 7 6 5 9 9 C 1.53004 * 109.46709 * 299.99974 * 8 7 6 10 10 C 1.52996 * 109.47122 * 59.99722 * 8 7 6 11 11 C 1.50703 * 109.47294 * 180.02562 * 8 7 6 12 12 H 1.08000 * 119.99571 * 0.02562 * 11 8 7 13 13 C 1.37878 * 119.99852 * 179.97438 * 11 8 7 14 14 N 1.31507 * 119.99953 * 0.02562 * 13 11 8 15 15 Si 1.86797 * 119.99773 * 179.97438 * 13 11 8 16 16 H 1.48500 * 109.47061 * 90.00058 * 15 13 11 17 17 H 1.48496 * 109.47538 * 210.00260 * 15 13 11 18 18 H 1.48502 * 109.47489 * 330.00707 * 15 13 11 19 19 C 1.53781 * 113.61413 * 208.47320 * 3 2 1 20 20 H 1.08995 * 109.47317 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.46781 * 300.00325 * 1 2 3 22 22 H 1.09002 * 109.46817 * 60.00169 * 1 2 3 23 23 H 1.09002 * 112.84974 * 339.66626 * 3 2 1 24 24 H 1.09003 * 113.60734 * 254.54335 * 4 3 2 25 25 H 1.08996 * 113.61146 * 25.43833 * 4 3 2 26 26 H 1.09003 * 113.61186 * 89.11185 * 5 4 3 27 27 H 1.00901 * 111.00069 * 128.58311 * 6 5 4 28 28 H 1.08999 * 109.47315 * 300.00403 * 7 6 5 29 29 H 1.09002 * 109.47268 * 59.99916 * 7 6 5 30 30 H 1.08995 * 109.47193 * 60.00255 * 9 8 7 31 31 H 1.09004 * 109.46935 * 179.97438 * 9 8 7 32 32 H 1.08999 * 109.47655 * 299.99515 * 9 8 7 33 33 H 1.09006 * 109.46778 * 60.00424 * 10 8 7 34 34 H 1.08996 * 109.47212 * 180.02562 * 10 8 7 35 35 H 1.08993 * 109.47355 * 300.00710 * 10 8 7 36 36 H 0.97006 * 119.99851 * 180.02562 * 14 13 11 37 37 H 1.09005 * 113.61302 * 334.47944 * 19 3 2 38 38 H 1.08993 * 113.62030 * 105.38790 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 2.7213 1.6652 1.3153 5 6 3.8114 2.3246 0.4540 6 7 5.1751 2.0923 0.9484 7 6 5.7351 3.3138 1.5418 8 6 7.1530 3.0334 2.0435 9 6 7.1108 1.9266 3.0991 10 6 8.0298 2.5873 0.8717 11 6 7.7274 4.2864 2.6528 12 1 7.1396 5.1920 2.6799 13 6 9.0027 4.2762 3.1767 14 7 9.7181 3.1733 3.1441 15 14 9.7148 5.8295 3.9313 16 1 9.3880 5.8712 5.3793 17 1 11.1894 5.8338 3.7564 18 1 9.1330 7.0186 3.2582 19 6 3.3923 1.3643 -0.6718 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.3220 2.0752 -0.3490 24 1 2.1660 2.3713 1.9327 25 1 3.0715 0.7972 1.8738 26 1 3.6155 3.3730 0.2291 27 1 5.7711 1.7411 0.2139 28 1 5.7655 4.1022 0.7897 29 1 5.1102 3.6319 2.3763 30 1 6.6953 1.0203 2.6588 31 1 8.1210 1.7265 3.4563 32 1 6.4862 2.2443 3.9340 33 1 8.0598 3.3758 0.1197 34 1 9.0398 2.3871 1.2292 35 1 7.6142 1.6810 0.4314 36 1 10.6153 3.1660 3.5130 37 1 3.9262 0.4141 -0.6564 38 1 3.3790 1.8275 -1.6583 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590970576.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:41 Heat of formation + Delta-G solvation = -48.050109 kcal Electronic energy + Delta-G solvation = -16215.980093 eV Core-core repulsion = 13672.327278 eV Total energy + Delta-G solvation = -2543.652816 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.47396 -38.42466 -36.97358 -34.27683 -31.97108 -27.67701 -27.51364 -27.25198 -26.68052 -25.82930 -23.53995 -20.66248 -20.23936 -18.08387 -17.64097 -16.88659 -16.45709 -16.19763 -15.83879 -15.60557 -15.10231 -14.51353 -14.14068 -13.88325 -13.31250 -13.24820 -13.04643 -12.97552 -12.68622 -12.57407 -12.36343 -12.18284 -12.08009 -11.90186 -11.76946 -11.51233 -11.29397 -10.84034 -10.58209 -10.36173 -10.33739 -9.13851 -7.95694 -6.12840 1.42884 1.44765 1.53155 2.47137 2.87916 3.26270 3.56193 3.68251 3.76217 3.96549 3.99323 4.37784 4.55848 4.58638 4.61036 4.67422 4.80528 4.88204 4.88716 4.91564 5.00838 5.06090 5.17046 5.25576 5.27089 5.32822 5.44315 5.55448 5.70792 5.77794 6.19413 6.30449 6.36125 6.39681 6.51334 6.67078 6.96830 7.54734 9.02486 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.062711 B = 0.004989 C = 0.004913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 446.382871 B = 5610.724835 C = 5698.321147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.401 6.401 3 C 0.070 3.930 4 C -0.143 4.143 5 C 0.054 3.946 6 N -0.676 5.676 7 C 0.091 3.909 8 C 0.056 3.944 9 C -0.104 4.104 10 C -0.120 4.120 11 C -0.527 4.527 12 H 0.045 0.955 13 C 0.022 3.978 14 N -0.904 5.904 15 Si 0.945 3.055 16 H -0.280 1.280 17 H -0.285 1.285 18 H -0.272 1.272 19 C -0.132 4.132 20 H 0.094 0.906 21 H 0.046 0.954 22 H 0.054 0.946 23 H 0.108 0.892 24 H 0.067 0.933 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.340 0.660 28 H 0.011 0.989 29 H 0.046 0.954 30 H 0.032 0.968 31 H 0.048 0.952 32 H 0.008 0.992 33 H 0.018 0.982 34 H 0.055 0.945 35 H 0.033 0.967 36 H 0.257 0.743 37 H 0.085 0.915 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.095 -3.036 -7.317 17.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.320 6.320 3 C 0.012 3.988 4 C -0.182 4.182 5 C -0.057 4.057 6 N -0.309 5.309 7 C -0.038 4.038 8 C 0.056 3.944 9 C -0.162 4.162 10 C -0.178 4.178 11 C -0.565 4.565 12 H 0.063 0.937 13 C -0.177 4.177 14 N -0.543 5.543 15 Si 0.772 3.228 16 H -0.206 1.206 17 H -0.210 1.210 18 H -0.197 1.197 19 C -0.170 4.170 20 H 0.112 0.888 21 H 0.065 0.935 22 H 0.073 0.927 23 H 0.125 0.875 24 H 0.086 0.914 25 H 0.094 0.906 26 H 0.093 0.907 27 H 0.161 0.839 28 H 0.029 0.971 29 H 0.064 0.936 30 H 0.051 0.949 31 H 0.067 0.933 32 H 0.027 0.973 33 H 0.037 0.963 34 H 0.074 0.926 35 H 0.052 0.948 36 H 0.067 0.933 37 H 0.104 0.896 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -15.013 -3.522 -6.671 16.802 hybrid contribution 0.707 1.567 -0.049 1.720 sum -14.306 -1.955 -6.720 15.926 Atomic orbital electron populations 1.22964 0.79837 1.03683 1.00778 1.87926 1.21341 1.28084 1.94690 1.23568 0.93715 0.85233 0.96309 1.23556 0.96701 1.00592 0.97338 1.22814 0.89393 0.97587 0.95861 1.60599 1.02765 1.30977 1.36514 1.21844 0.96217 0.89302 0.96425 1.18182 0.90044 0.93594 0.92612 1.21461 0.99800 0.97265 0.97691 1.21648 1.02185 0.96980 0.96973 1.21437 0.99700 0.96826 1.38569 0.93694 1.25547 0.97395 0.98421 0.96373 1.69971 1.10462 1.27469 1.46391 0.85760 0.77441 0.80840 0.78750 1.20610 1.21047 1.19688 1.23413 0.95650 0.99940 0.98033 0.88780 0.93549 0.92711 0.87472 0.91393 0.90640 0.90748 0.83934 0.97057 0.93587 0.94889 0.93338 0.97251 0.96292 0.92628 0.94781 0.93340 0.89631 0.89505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 10.85 113.37 1.23 1.60 16 2 O -0.40 -9.67 10.72 -148.98 -1.60 -11.27 16 3 C 0.07 1.56 4.30 31.12 0.13 1.69 16 4 C -0.14 -3.85 7.72 31.12 0.24 -3.61 16 5 C 0.05 1.52 4.14 45.44 0.19 1.71 16 6 N -0.68 -23.87 5.77 -488.85 -2.82 -26.69 16 7 C 0.09 3.81 4.43 86.30 0.38 4.19 16 8 C 0.06 2.75 0.57 -52.93 -0.03 2.72 16 9 C -0.10 -5.22 8.09 71.98 0.58 -4.63 16 10 C -0.12 -5.69 7.92 71.98 0.57 -5.12 16 11 C -0.53 -28.74 8.01 25.60 0.21 -28.53 16 12 H 0.04 2.45 7.74 -2.91 -0.02 2.42 16 13 C 0.02 1.18 5.15 84.66 0.44 1.62 16 14 N -0.90 -50.98 9.35 21.45 0.20 -50.78 16 15 Si 0.95 43.61 29.54 68.60 2.03 45.63 16 16 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 17 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 18 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 19 C -0.13 -3.14 7.48 31.12 0.23 -2.90 16 20 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 21 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 22 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 23 H 0.11 1.85 7.88 -2.39 -0.02 1.83 16 24 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 25 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 26 H 0.07 2.03 7.87 -2.39 -0.02 2.01 16 27 H 0.34 11.76 6.58 -89.69 -0.59 11.17 16 28 H 0.01 0.47 8.13 -2.39 -0.02 0.45 16 29 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.03 1.51 7.60 -2.39 -0.02 1.49 16 31 H 0.05 2.66 6.07 -2.38 -0.01 2.64 16 32 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.02 0.85 8.14 -2.38 -0.02 0.83 16 34 H 0.05 2.95 6.07 -2.39 -0.01 2.94 16 35 H 0.03 1.41 6.57 -2.39 -0.02 1.40 16 36 H 0.26 13.95 8.31 -92.70 -0.77 13.18 16 37 H 0.09 2.24 8.14 -2.38 -0.02 2.22 16 38 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -59.35 299.62 2.40 -56.94 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: 0.42 Total: 17.42 kcal Atomic # 6 Polarization: -35.44 SS G_CDS: 4.17 Total: -31.27 kcal Atomic # 7 Polarization: -74.84 SS G_CDS: -2.62 Total: -77.46 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: -1.60 Total: -11.27 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.63 kcal Total: -59.35 2.40 -56.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590970576.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.894 kcal (2) G-P(sol) polarization free energy of solvation -59.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds