Wall clock time and date at job start Sun Mar 29 2020 21:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47137 * 2 1 4 4 H 1.09003 * 110.27633 * 55.63216 * 3 2 1 5 5 C 1.53987 * 110.30881 * 293.54433 * 3 2 1 6 6 N 1.47903 * 107.05961 * 242.30840 * 5 3 2 7 7 C 1.46903 * 111.00203 * 214.15256 * 6 5 3 8 8 H 1.09004 * 109.46615 * 56.77985 * 7 6 5 9 9 C 1.52995 * 109.47258 * 296.78297 * 7 6 5 10 10 C 1.52997 * 109.47174 * 176.78058 * 7 6 5 11 11 C 1.50701 * 109.47092 * 185.44819 * 10 7 6 12 12 H 1.08001 * 119.99718 * 5.07571 * 11 10 7 13 13 C 1.37872 * 119.99885 * 185.08047 * 11 10 7 14 14 N 1.31516 * 120.00314 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00007 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47477 * 59.99287 * 15 13 11 17 17 H 1.48499 * 109.47398 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.46769 * 299.99196 * 15 13 11 19 19 C 1.48531 * 105.81877 * 334.66846 * 6 5 3 20 20 C 1.54597 * 110.31071 * 177.82807 * 3 2 1 21 21 H 1.09002 * 110.72117 * 22.51100 * 20 3 2 22 22 O 1.42896 * 110.72478 * 259.23296 * 20 3 2 23 23 H 1.08994 * 109.46961 * 60.00321 * 1 2 3 24 24 H 1.08999 * 109.47107 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.46946 * 300.00259 * 1 2 3 26 26 H 1.09002 * 109.47385 * 239.99852 * 2 1 3 27 27 H 1.09004 * 109.46934 * 119.99620 * 2 1 3 28 28 H 1.09005 * 109.91938 * 1.66255 * 5 3 2 29 29 H 1.08997 * 109.92090 * 122.95398 * 5 3 2 30 30 H 1.09000 * 109.47381 * 299.99790 * 9 7 6 31 31 H 1.09008 * 109.47231 * 60.00027 * 9 7 6 32 32 H 1.08999 * 109.47221 * 179.97438 * 9 7 6 33 33 H 1.09008 * 109.47220 * 305.44586 * 10 7 6 34 34 H 1.08998 * 109.47217 * 65.44761 * 10 7 6 35 35 H 0.96998 * 120.00254 * 179.97438 * 14 13 11 36 36 H 1.08995 * 110.66746 * 280.77093 * 19 6 5 37 37 H 1.09003 * 110.80470 * 157.70599 * 19 6 5 38 38 H 0.96704 * 114.00293 * 179.97438 * 22 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6217 1.9911 0.8440 5 6 1.6743 2.1387 -1.3239 6 7 2.9447 2.5029 -1.9880 7 6 2.8088 3.7641 -2.7289 8 1 2.4778 4.5503 -2.0502 9 6 1.7801 3.5900 -3.8479 10 6 4.1605 4.1484 -3.3340 11 6 4.0541 5.5059 -3.9796 12 1 3.1416 6.0766 -3.8898 13 6 5.1217 6.0193 -4.6849 14 7 6.2331 5.3246 -4.7939 15 14 4.9902 7.7024 -5.4846 16 1 4.7230 8.7261 -4.4426 17 1 6.2643 8.0225 -6.1770 18 1 3.8790 7.6969 -6.4696 19 6 3.9482 2.6299 -0.9004 20 6 3.5848 1.4655 0.0549 21 1 3.9977 0.5247 -0.3090 22 8 4.0396 1.7393 1.3817 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8901 28 1 1.1062 1.4573 -1.9573 29 1 1.0900 3.0365 -1.1224 30 1 2.1109 2.8039 -4.5266 31 1 0.8170 3.3163 -3.4168 32 1 1.6789 4.5260 -4.3973 33 1 4.9152 4.1780 -2.5480 34 1 4.4457 3.4107 -4.0840 35 1 6.9841 5.6857 -5.2904 36 1 3.8467 3.5894 -0.3934 37 1 4.9588 2.5069 -1.2898 38 1 5.0023 1.7642 1.4702 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591021703.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:09 Heat of formation + Delta-G solvation = -67.121958 kcal Electronic energy + Delta-G solvation = -16474.746237 eV Core-core repulsion = 13930.266404 eV Total energy + Delta-G solvation = -2544.479833 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.39229 -36.18442 -34.80466 -32.93947 -31.30954 -28.22210 -27.85074 -26.34326 -23.93153 -22.55304 -21.33556 -19.82803 -19.03029 -17.19862 -16.59854 -15.34711 -15.13589 -14.47357 -14.28396 -13.73223 -13.61152 -13.48980 -12.59555 -12.50144 -12.36172 -12.03890 -11.91033 -11.58348 -11.36495 -11.14389 -10.90561 -10.84254 -10.80675 -10.44828 -10.37429 -10.25237 -9.86537 -9.68042 -9.19313 -9.11589 -8.33839 -7.82537 -5.99535 -4.01357 3.33064 3.37643 3.39829 4.11362 4.44856 4.71069 4.78481 4.83214 5.04487 5.24516 5.36190 5.42344 5.49710 5.61952 5.70510 5.81223 5.96981 5.98273 6.00333 6.04929 6.17132 6.24034 6.29350 6.34107 6.36670 6.42915 6.67278 6.89827 7.11583 7.43884 7.52096 7.73153 7.76945 7.86296 8.06997 8.43773 9.04675 9.61807 11.11856 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.041256 B = 0.006079 C = 0.005548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.519584 B = 4604.983293 C = 5045.266671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.112 4.112 3 C -0.092 4.092 4 H 0.080 0.920 5 C 0.042 3.958 6 N -0.509 5.509 7 C 0.077 3.923 8 H 0.028 0.972 9 C -0.127 4.127 10 C 0.033 3.967 11 C -0.518 4.518 12 H 0.054 0.946 13 C 0.059 3.941 14 N -0.894 5.894 15 Si 0.891 3.109 16 H -0.278 1.278 17 H -0.287 1.287 18 H -0.277 1.277 19 C 0.012 3.988 20 C 0.099 3.901 21 H 0.070 0.930 22 O -0.567 6.567 23 H 0.057 0.943 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.067 0.933 27 H 0.061 0.939 28 H 0.078 0.922 29 H 0.041 0.959 30 H 0.054 0.946 31 H 0.030 0.970 32 H 0.066 0.934 33 H 0.013 0.987 34 H 0.028 0.972 35 H 0.261 0.739 36 H 0.050 0.950 37 H 0.086 0.914 38 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.506 -8.911 8.874 14.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C -0.111 4.111 4 H 0.098 0.902 5 C -0.087 4.087 6 N -0.235 5.235 7 C -0.031 4.031 8 H 0.046 0.954 9 C -0.185 4.185 10 C -0.005 4.005 11 C -0.557 4.557 12 H 0.072 0.928 13 C -0.142 4.142 14 N -0.533 5.533 15 Si 0.719 3.281 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.202 1.202 19 C -0.117 4.117 20 C 0.040 3.960 21 H 0.088 0.912 22 O -0.372 6.372 23 H 0.076 0.924 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.085 0.915 27 H 0.080 0.920 28 H 0.096 0.904 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.049 0.951 32 H 0.085 0.915 33 H 0.031 0.969 34 H 0.046 0.954 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.104 0.896 38 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -7.827 -9.270 8.521 14.826 hybrid contribution 0.403 1.674 -0.076 1.723 sum -7.423 -7.597 8.445 13.570 Atomic orbital electron populations 1.21801 0.95863 1.01354 1.01935 1.21550 0.95819 0.95566 1.02046 1.22012 0.93864 0.96900 0.98288 0.90189 1.22939 0.93584 0.98829 0.93315 1.64825 1.04526 1.33375 1.20765 1.22053 0.99972 0.86801 0.94234 0.95397 1.21696 0.96085 1.02332 0.98399 1.19140 0.89297 0.96224 0.95804 1.21150 0.99400 1.02290 1.32821 0.92800 1.24977 0.95417 0.97432 0.96410 1.69957 1.03777 1.37717 1.41882 0.86683 0.77270 0.84598 0.79598 1.20337 1.21289 1.20227 1.23785 0.98290 0.97493 0.92119 1.22855 0.94441 0.97069 0.81647 0.91235 1.86457 1.27113 1.94719 1.28932 0.92375 0.92912 0.92943 0.91464 0.92037 0.90387 0.94097 0.92666 0.95111 0.91534 0.96908 0.95389 0.92973 0.93162 0.89606 0.77471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.73 37.16 0.36 -1.16 16 2 C -0.11 -1.28 5.13 -26.73 -0.14 -1.42 16 3 C -0.09 -1.26 2.79 -89.26 -0.25 -1.51 16 4 H 0.08 1.13 8.08 -51.93 -0.42 0.72 16 5 C 0.04 0.64 4.68 -2.76 -0.01 0.63 16 6 N -0.51 -9.45 5.11 -222.51 -1.14 -10.59 16 7 C 0.08 1.64 1.78 -67.71 -0.12 1.52 16 8 H 0.03 0.62 7.99 -51.93 -0.41 0.21 16 9 C -0.13 -2.50 8.97 37.15 0.33 -2.16 16 10 C 0.03 0.85 4.41 -27.88 -0.12 0.72 16 11 C -0.52 -14.51 8.31 -34.44 -0.29 -14.80 16 12 H 0.05 1.47 7.28 -52.49 -0.38 1.09 16 13 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 14 N -0.89 -26.79 13.29 55.43 0.74 -26.05 16 15 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 17 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 C 0.01 0.20 5.11 -1.90 -0.01 0.19 16 20 C 0.10 1.42 3.98 -24.87 -0.10 1.32 16 21 H 0.07 0.94 7.86 -51.93 -0.41 0.53 16 22 O -0.57 -7.68 13.40 -35.23 -0.47 -8.15 16 23 H 0.06 0.59 6.88 -51.93 -0.36 0.23 16 24 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.08 1.13 6.73 -51.93 -0.35 0.78 16 29 H 0.04 0.65 7.63 -51.93 -0.40 0.25 16 30 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.03 0.51 7.25 -51.92 -0.38 0.14 16 32 H 0.07 1.37 7.09 -51.93 -0.37 1.00 16 33 H 0.01 0.35 6.64 -51.92 -0.35 0.00 16 34 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 36 H 0.05 0.94 8.00 -51.93 -0.42 0.52 16 37 H 0.09 1.56 7.53 -51.93 -0.39 1.17 16 38 H 0.38 3.61 9.12 45.56 0.42 4.03 16 LS Contribution 298.25 15.07 4.49 4.49 Total: -1.00 -30.51 298.25 -7.72 -38.23 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -5.88 Total: 0.55 kcal Atomic # 6 Polarization: -14.64 SS G_CDS: -0.44 Total: -15.08 kcal Atomic # 7 Polarization: -36.24 SS G_CDS: -0.40 Total: -36.64 kcal Atomic # 8 Polarization: -7.68 SS G_CDS: -0.47 Total: -8.15 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.51 -7.72 -38.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591021703.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.896 kcal (2) G-P(sol) polarization free energy of solvation -30.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds