Wall clock time and date at job start Sun Mar 29 2020 21:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47137 * 2 1 4 4 H 1.09003 * 110.27633 * 55.63216 * 3 2 1 5 5 C 1.53987 * 110.30881 * 293.54433 * 3 2 1 6 6 N 1.47903 * 107.05961 * 242.30840 * 5 3 2 7 7 C 1.46903 * 111.00203 * 214.15256 * 6 5 3 8 8 H 1.09004 * 109.46615 * 56.77985 * 7 6 5 9 9 C 1.52995 * 109.47258 * 296.78297 * 7 6 5 10 10 C 1.52997 * 109.47174 * 176.78058 * 7 6 5 11 11 C 1.50701 * 109.47092 * 185.44819 * 10 7 6 12 12 H 1.08001 * 119.99718 * 5.07571 * 11 10 7 13 13 C 1.37872 * 119.99885 * 185.08047 * 11 10 7 14 14 N 1.31516 * 120.00314 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00007 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47477 * 59.99287 * 15 13 11 17 17 H 1.48499 * 109.47398 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.46769 * 299.99196 * 15 13 11 19 19 C 1.48531 * 105.81877 * 334.66846 * 6 5 3 20 20 C 1.54597 * 110.31071 * 177.82807 * 3 2 1 21 21 H 1.09002 * 110.72117 * 22.51100 * 20 3 2 22 22 O 1.42896 * 110.72478 * 259.23296 * 20 3 2 23 23 H 1.08994 * 109.46961 * 60.00321 * 1 2 3 24 24 H 1.08999 * 109.47107 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.46946 * 300.00259 * 1 2 3 26 26 H 1.09002 * 109.47385 * 239.99852 * 2 1 3 27 27 H 1.09004 * 109.46934 * 119.99620 * 2 1 3 28 28 H 1.09005 * 109.91938 * 1.66255 * 5 3 2 29 29 H 1.08997 * 109.92090 * 122.95398 * 5 3 2 30 30 H 1.09000 * 109.47381 * 299.99790 * 9 7 6 31 31 H 1.09008 * 109.47231 * 60.00027 * 9 7 6 32 32 H 1.08999 * 109.47221 * 179.97438 * 9 7 6 33 33 H 1.09008 * 109.47220 * 305.44586 * 10 7 6 34 34 H 1.08998 * 109.47217 * 65.44761 * 10 7 6 35 35 H 0.96998 * 120.00254 * 179.97438 * 14 13 11 36 36 H 1.08995 * 110.66746 * 280.77093 * 19 6 5 37 37 H 1.09003 * 110.80470 * 157.70599 * 19 6 5 38 38 H 0.96704 * 114.00293 * 179.97438 * 22 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6217 1.9911 0.8440 5 6 1.6743 2.1387 -1.3239 6 7 2.9447 2.5029 -1.9880 7 6 2.8088 3.7641 -2.7289 8 1 2.4778 4.5503 -2.0502 9 6 1.7801 3.5900 -3.8479 10 6 4.1605 4.1484 -3.3340 11 6 4.0541 5.5059 -3.9796 12 1 3.1416 6.0766 -3.8898 13 6 5.1217 6.0193 -4.6849 14 7 6.2331 5.3246 -4.7939 15 14 4.9902 7.7024 -5.4846 16 1 4.7230 8.7261 -4.4426 17 1 6.2643 8.0225 -6.1770 18 1 3.8790 7.6969 -6.4696 19 6 3.9482 2.6299 -0.9004 20 6 3.5848 1.4655 0.0549 21 1 3.9977 0.5247 -0.3090 22 8 4.0396 1.7393 1.3817 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8901 28 1 1.1062 1.4573 -1.9573 29 1 1.0900 3.0365 -1.1224 30 1 2.1109 2.8039 -4.5266 31 1 0.8170 3.3163 -3.4168 32 1 1.6789 4.5260 -4.3973 33 1 4.9152 4.1780 -2.5480 34 1 4.4457 3.4107 -4.0840 35 1 6.9841 5.6857 -5.2904 36 1 3.8467 3.5894 -0.3934 37 1 4.9588 2.5069 -1.2898 38 1 5.0023 1.7642 1.4702 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591021703.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:09 Heat of formation + Delta-G solvation = -89.340306 kcal Electronic energy + Delta-G solvation = -16475.709697 eV Core-core repulsion = 13930.266404 eV Total energy + Delta-G solvation = -2545.443293 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.70503 -37.56669 -36.05313 -34.77291 -32.89605 -29.88204 -29.03186 -28.01691 -25.59856 -24.00727 -22.58801 -21.17787 -20.52818 -18.67796 -18.34501 -16.84798 -16.63091 -16.07488 -15.73480 -15.07919 -14.89456 -14.73885 -14.20207 -14.00768 -13.65544 -13.55911 -13.17100 -13.10188 -12.79038 -12.72777 -12.56016 -12.50554 -12.27320 -11.94254 -11.64793 -11.53341 -11.37910 -11.19176 -11.06187 -10.87447 -10.53725 -9.34280 -8.19329 -6.29449 1.39565 1.42228 1.50024 2.39967 2.88959 3.14101 3.45983 3.58074 3.68944 3.96486 4.22223 4.27579 4.31712 4.40237 4.51538 4.59852 4.64918 4.66557 4.74627 4.83541 4.91707 5.00920 5.03732 5.14329 5.20510 5.25006 5.37158 5.39482 5.45713 5.48942 5.65789 5.76448 5.99052 6.15584 6.33312 6.81566 6.85753 7.38797 8.92661 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.041256 B = 0.006079 C = 0.005548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.519584 B = 4604.983293 C = 5045.266671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.107 4.107 3 C -0.087 4.087 4 H 0.077 0.923 5 C 0.043 3.957 6 N -0.519 5.519 7 C 0.087 3.913 8 H 0.018 0.982 9 C -0.120 4.120 10 C 0.043 3.957 11 C -0.535 4.535 12 H 0.059 0.941 13 C 0.003 3.997 14 N -0.932 5.932 15 Si 0.962 3.038 16 H -0.269 1.269 17 H -0.283 1.283 18 H -0.266 1.266 19 C 0.010 3.990 20 C 0.111 3.889 21 H 0.082 0.918 22 O -0.574 6.574 23 H 0.055 0.945 24 H 0.067 0.933 25 H 0.054 0.946 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.093 0.907 29 H 0.039 0.961 30 H 0.048 0.952 31 H 0.063 0.937 32 H 0.053 0.947 33 H -0.012 1.012 34 H -0.005 1.005 35 H 0.263 0.737 36 H 0.032 0.968 37 H 0.067 0.933 38 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.031 -9.188 9.317 15.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.144 4.144 3 C -0.106 4.106 4 H 0.096 0.904 5 C -0.085 4.085 6 N -0.244 5.244 7 C -0.021 4.021 8 H 0.036 0.964 9 C -0.177 4.177 10 C 0.005 3.995 11 C -0.574 4.574 12 H 0.077 0.923 13 C -0.195 4.195 14 N -0.572 5.572 15 Si 0.786 3.214 16 H -0.194 1.194 17 H -0.209 1.209 18 H -0.190 1.190 19 C -0.119 4.119 20 C 0.051 3.949 21 H 0.100 0.900 22 O -0.381 6.381 23 H 0.074 0.926 24 H 0.086 0.914 25 H 0.073 0.927 26 H 0.085 0.915 27 H 0.087 0.913 28 H 0.111 0.889 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.006 0.994 34 H 0.014 0.986 35 H 0.072 0.928 36 H 0.050 0.950 37 H 0.085 0.915 38 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -9.357 -9.556 8.980 16.109 hybrid contribution 0.924 1.731 -0.165 1.969 sum -8.432 -7.825 8.815 14.492 Atomic orbital electron populations 1.21790 0.94623 1.02381 1.01985 1.21513 0.96857 0.93636 1.02414 1.22008 0.93231 0.98377 0.97005 0.90414 1.23025 0.91960 0.99193 0.94322 1.64748 1.06525 1.31406 1.21722 1.21771 0.97593 0.87970 0.94815 0.96356 1.21600 0.97041 1.01519 0.97560 1.18951 0.91427 0.94913 0.94188 1.21533 0.99683 1.03186 1.32975 0.92280 1.25906 0.94933 1.01641 0.96988 1.70097 1.04614 1.39753 1.42753 0.85551 0.77594 0.79433 0.78780 1.19421 1.20865 1.19037 1.23779 0.97340 0.98245 0.92535 1.22745 0.95100 0.95775 0.81245 0.90017 1.86425 1.28948 1.94615 1.28102 0.92568 0.91444 0.92664 0.91482 0.91276 0.88913 0.94272 0.93252 0.91816 0.92772 0.99367 0.98645 0.92829 0.94988 0.91450 0.75524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 9.73 71.98 0.70 -1.86 16 2 C -0.11 -2.14 5.13 30.59 0.16 -1.98 16 3 C -0.09 -2.22 2.79 -9.92 -0.03 -2.25 16 4 H 0.08 2.05 8.08 -2.39 -0.02 2.03 16 5 C 0.04 1.24 4.68 86.44 0.40 1.65 16 6 N -0.52 -19.22 5.11 -857.88 -4.38 -23.61 16 7 C 0.09 3.74 1.78 44.91 0.08 3.82 16 8 H 0.02 0.83 7.99 -2.38 -0.02 0.81 16 9 C -0.12 -4.61 8.97 71.98 0.65 -3.96 16 10 C 0.04 2.30 4.41 29.85 0.13 2.43 16 11 C -0.54 -30.56 8.31 25.60 0.21 -30.35 16 12 H 0.06 3.24 7.28 -2.91 -0.02 3.22 16 13 C 0.00 0.18 5.46 84.65 0.46 0.65 16 14 N -0.93 -57.11 13.29 21.45 0.28 -56.83 16 15 Si 0.96 44.45 29.54 68.60 2.03 46.47 16 16 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 17 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 18 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 19 C 0.01 0.35 5.11 86.65 0.44 0.79 16 20 C 0.11 3.05 3.98 31.80 0.13 3.17 16 21 H 0.08 2.08 7.86 -2.39 -0.02 2.06 16 22 O -0.57 -14.70 13.40 -148.98 -2.00 -16.70 16 23 H 0.06 0.97 6.88 -2.39 -0.02 0.96 16 24 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 28 H 0.09 2.45 6.73 -2.38 -0.02 2.43 16 29 H 0.04 1.17 7.63 -2.39 -0.02 1.15 16 30 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.06 2.01 7.25 -2.38 -0.02 1.99 16 32 H 0.05 2.19 7.09 -2.39 -0.02 2.18 16 33 H -0.01 -0.69 6.64 -2.38 -0.02 -0.71 16 34 H 0.00 -0.29 8.14 -2.39 -0.02 -0.31 16 35 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 36 H 0.03 1.24 8.00 -2.39 -0.02 1.22 16 37 H 0.07 2.59 7.53 -2.39 -0.02 2.57 16 38 H 0.39 7.05 9.12 -74.05 -0.68 6.38 16 Total: -1.00 -65.84 298.25 -0.39 -66.23 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: 0.34 Total: 12.32 kcal Atomic # 6 Polarization: -31.22 SS G_CDS: 3.33 Total: -27.89 kcal Atomic # 7 Polarization: -76.34 SS G_CDS: -4.10 Total: -80.43 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: -2.00 Total: -16.70 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.47 kcal Total: -65.84 -0.39 -66.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591021703.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.109 kcal (2) G-P(sol) polarization free energy of solvation -65.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds