Wall clock time and date at job start Sun Mar 29 2020 22:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.47339 * 2 1 4 4 C 1.53002 * 109.47225 * 239.99698 * 2 1 3 5 5 C 1.50704 * 109.47265 * 174.99852 * 4 2 1 6 6 H 1.08006 * 119.99615 * 0.02562 * 5 4 2 7 7 C 1.37868 * 120.00342 * 180.02562 * 5 4 2 8 8 N 1.31520 * 119.99738 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00392 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47312 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47643 * 120.00168 * 9 7 5 12 12 H 1.48502 * 109.47379 * 240.00241 * 9 7 5 13 13 N 1.46906 * 109.47255 * 119.99714 * 2 1 3 14 14 C 1.46895 * 111.00098 * 262.25821 * 13 2 1 15 15 C 1.53001 * 110.54264 * 58.21866 * 14 13 2 16 16 C 1.54819 * 110.48458 * 295.60131 * 14 13 2 17 17 C 1.54989 * 102.09276 * 262.20890 * 16 14 13 18 18 O 1.44381 * 103.49255 * 322.97422 * 17 16 14 19 19 C 1.43751 * 106.97302 * 40.06310 * 18 17 16 20 20 H 1.09000 * 109.87741 * 92.90687 * 19 18 17 21 21 C 1.52993 * 109.87771 * 214.06509 * 19 18 17 22 22 H 1.08996 * 109.47206 * 294.64350 * 1 2 3 23 23 H 1.08998 * 109.46984 * 54.64538 * 1 2 3 24 24 H 1.08997 * 109.46878 * 174.64217 * 1 2 3 25 25 H 1.08996 * 109.47118 * 295.00221 * 4 2 1 26 26 H 1.09004 * 109.47206 * 55.00275 * 4 2 1 27 27 H 0.97000 * 120.00108 * 180.02562 * 8 7 5 28 28 H 1.00903 * 110.99232 * 26.20868 * 13 2 1 29 29 H 1.09002 * 109.46605 * 178.01791 * 15 14 13 30 30 H 1.08996 * 109.47233 * 298.01459 * 15 14 13 31 31 H 1.08992 * 109.46861 * 58.02064 * 15 14 13 32 32 H 1.09003 * 110.90497 * 20.40626 * 16 14 13 33 33 H 1.09000 * 110.90305 * 144.00873 * 16 14 13 34 34 H 1.08993 * 110.62395 * 81.47592 * 17 16 14 35 35 H 1.09003 * 110.61636 * 204.47696 * 17 16 14 36 36 H 1.09001 * 109.47112 * 177.83121 * 21 19 18 37 37 H 1.09004 * 109.47449 * 297.83034 * 21 19 18 38 38 H 1.08996 * 109.47628 * 57.82990 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3127 6 1 4.0790 -0.0861 -0.5391 7 6 4.2304 -1.1927 -2.3582 8 7 3.5763 -1.8362 -3.3004 9 14 6.0921 -1.0614 -2.4366 10 1 6.5838 -0.2919 -1.2656 11 1 6.6855 -2.4226 -2.4196 12 1 6.4871 -0.3649 -3.6872 13 7 2.0197 -0.6925 1.1995 14 6 2.3693 0.2670 2.2554 15 6 1.1589 1.1289 2.6200 16 6 3.5537 1.1579 1.8074 17 6 4.7614 0.4521 2.4747 18 8 4.2339 0.0094 3.7437 19 6 2.9010 -0.4703 3.4997 20 1 2.9218 -1.5441 3.3135 21 6 2.0097 -0.1656 4.7053 22 1 -0.3633 0.4285 0.9340 23 1 -0.3633 0.5946 -0.8381 24 1 -0.3633 -1.0232 -0.0960 25 1 1.7516 -1.7715 -1.2055 26 1 1.6054 -0.2618 -2.1370 27 1 4.0607 -2.2430 -4.0358 28 1 1.3433 -1.3640 1.5307 29 1 1.4276 1.8094 3.4280 30 1 0.8471 1.7047 1.7486 31 1 0.3398 0.4866 2.9432 32 1 3.6530 1.1559 0.7219 33 1 3.4401 2.1743 2.1845 34 1 5.0872 -0.3989 1.8766 35 1 5.5818 1.1541 2.6240 36 1 0.9922 -0.4973 4.4980 37 1 2.3914 -0.6901 5.5813 38 1 2.0102 0.9076 4.8956 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591032724.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:13 Heat of formation + Delta-G solvation = -51.759340 kcal Electronic energy + Delta-G solvation = -17174.136796 eV Core-core repulsion = 14630.323135 eV Total energy + Delta-G solvation = -2543.813660 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.90249 -36.46600 -33.37689 -32.05368 -31.05441 -28.62907 -27.71678 -26.74452 -24.22560 -23.08547 -21.99331 -19.44562 -18.77037 -16.84607 -15.87004 -15.52437 -14.97131 -14.50549 -14.25870 -13.84486 -13.60626 -13.35027 -12.73749 -12.24529 -12.12520 -11.93215 -11.84773 -11.66032 -11.44346 -11.26102 -10.90441 -10.75144 -10.68397 -10.47263 -10.39800 -10.09222 -9.92620 -9.31587 -9.21314 -8.86976 -8.24768 -7.59753 -5.87407 -3.84960 3.37453 3.45391 3.48160 4.20860 4.55992 4.60672 4.81473 5.16684 5.22649 5.42815 5.50275 5.51954 5.56308 5.67774 5.76063 5.80616 5.90556 5.91347 5.99015 6.03930 6.08581 6.17452 6.28007 6.38930 6.40954 6.48692 6.59404 6.65463 7.06322 7.20564 7.60357 7.73022 8.04710 8.07154 8.18453 8.61067 9.20162 9.76180 11.24822 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026626 B = 0.009677 C = 0.007666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.344995 B = 2892.860435 C = 3651.655137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.088 3.912 3 H 0.064 0.936 4 C 0.034 3.966 5 C -0.488 4.488 6 H 0.061 0.939 7 C 0.050 3.950 8 N -0.903 5.903 9 Si 0.885 3.115 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.288 1.288 13 N -0.649 5.649 14 C 0.086 3.914 15 C -0.174 4.174 16 C -0.150 4.150 17 C 0.054 3.946 18 O -0.383 6.383 19 C 0.083 3.917 20 H 0.074 0.926 21 C -0.150 4.150 22 H 0.044 0.956 23 H 0.053 0.947 24 H 0.052 0.948 25 H 0.017 0.983 26 H 0.015 0.985 27 H 0.256 0.744 28 H 0.330 0.670 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.107 0.893 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.066 0.934 37 H 0.056 0.944 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.189 5.076 12.140 13.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.021 4.021 3 H 0.082 0.918 4 C -0.004 4.004 5 C -0.526 4.526 6 H 0.079 0.921 7 C -0.149 4.149 8 N -0.544 5.544 9 Si 0.714 3.286 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.215 1.215 13 N -0.279 5.279 14 C -0.006 4.006 15 C -0.233 4.233 16 C -0.187 4.187 17 C -0.023 4.023 18 O -0.302 6.302 19 C 0.025 3.975 20 H 0.092 0.908 21 C -0.207 4.207 22 H 0.063 0.937 23 H 0.073 0.927 24 H 0.071 0.929 25 H 0.036 0.964 26 H 0.033 0.967 27 H 0.066 0.934 28 H 0.148 0.852 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.125 0.875 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.100 0.900 36 H 0.085 0.915 37 H 0.075 0.925 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.393 4.927 11.948 13.362 hybrid contribution 0.014 0.219 -0.147 0.264 sum -3.380 5.146 11.801 13.310 Atomic orbital electron populations 1.22682 0.99124 1.01561 1.00739 1.21819 0.90168 0.97982 0.92138 0.91831 1.19123 0.96149 0.95500 0.89616 1.21230 0.91960 1.32791 1.06640 0.92080 1.24999 0.97795 0.96006 0.96132 1.69974 1.34998 1.37060 1.12360 0.86648 0.86731 0.77622 0.77637 1.19800 1.21310 1.21459 1.60754 1.47787 1.15358 1.04025 1.22236 0.94615 0.92206 0.91529 1.22753 0.98473 1.00451 1.01629 1.23340 0.93934 0.97417 1.04046 1.23467 0.96100 0.98439 0.84263 1.88777 1.28117 1.83062 1.30265 1.22713 0.82992 0.98331 0.93445 0.90799 1.22037 0.98804 1.02296 0.97603 0.93679 0.92740 0.92914 0.96447 0.96703 0.93432 0.85210 0.92322 0.92107 0.92631 0.87490 0.91626 0.91032 0.89985 0.91507 0.92543 0.91911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.95 8.74 37.16 0.32 -2.63 16 2 C 0.09 1.69 1.59 -67.71 -0.11 1.59 16 3 H 0.06 1.25 5.73 -51.93 -0.30 0.95 16 4 C 0.03 0.84 4.65 -27.88 -0.13 0.71 16 5 C -0.49 -13.30 8.83 -34.44 -0.30 -13.61 16 6 H 0.06 1.61 5.60 -52.48 -0.29 1.32 16 7 C 0.05 1.42 5.46 -17.82 -0.10 1.33 16 8 N -0.90 -27.24 13.29 55.43 0.74 -26.50 16 9 Si 0.88 21.87 29.54 -169.99 -5.02 16.85 16 10 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 13 N -0.65 -11.60 5.58 -91.51 -0.51 -12.11 16 14 C 0.09 1.34 0.83 -130.07 -0.11 1.23 16 15 C -0.17 -2.27 5.92 37.16 0.22 -2.05 16 16 C -0.15 -2.47 5.85 -24.72 -0.14 -2.62 16 17 C 0.05 0.90 7.72 38.21 0.29 1.19 16 18 O -0.38 -6.49 11.19 -35.23 -0.39 -6.88 16 19 C 0.08 1.26 3.82 -26.16 -0.10 1.16 16 20 H 0.07 1.18 7.93 -51.93 -0.41 0.77 16 21 C -0.15 -1.81 8.40 37.15 0.31 -1.49 16 22 H 0.04 0.63 5.58 -51.93 -0.29 0.34 16 23 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 24 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 28 H 0.33 5.43 8.33 -39.29 -0.33 5.10 16 29 H 0.06 0.71 6.55 -51.93 -0.34 0.37 16 30 H 0.06 0.83 6.05 -51.93 -0.31 0.51 16 31 H 0.05 0.66 6.65 -51.93 -0.35 0.31 16 32 H 0.11 2.05 4.43 -51.93 -0.23 1.82 16 33 H 0.07 0.96 7.87 -51.93 -0.41 0.56 16 34 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 36 H 0.07 0.70 6.95 -51.93 -0.36 0.34 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.73 6.59 -51.93 -0.34 0.39 16 LS Contribution 286.30 15.07 4.31 4.31 Total: -1.00 -29.68 286.30 -6.77 -36.45 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -6.06 Total: 3.08 kcal Atomic # 6 Polarization: -15.36 SS G_CDS: 0.16 Total: -15.20 kcal Atomic # 7 Polarization: -38.84 SS G_CDS: 0.23 Total: -38.62 kcal Atomic # 8 Polarization: -6.49 SS G_CDS: -0.39 Total: -6.88 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -29.68 -6.77 -36.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591032724.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.308 kcal (2) G-P(sol) polarization free energy of solvation -29.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds