Wall clock time and date at job start Sun Mar 29 2020 22:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.47339 * 2 1 4 4 C 1.53002 * 109.47225 * 239.99698 * 2 1 3 5 5 C 1.50704 * 109.47265 * 174.99852 * 4 2 1 6 6 H 1.08006 * 119.99615 * 0.02562 * 5 4 2 7 7 C 1.37868 * 120.00342 * 180.02562 * 5 4 2 8 8 N 1.31520 * 119.99738 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00392 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47312 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47643 * 120.00168 * 9 7 5 12 12 H 1.48502 * 109.47379 * 240.00241 * 9 7 5 13 13 N 1.46906 * 109.47255 * 119.99714 * 2 1 3 14 14 C 1.46895 * 111.00098 * 262.25821 * 13 2 1 15 15 C 1.53001 * 110.54264 * 58.21866 * 14 13 2 16 16 C 1.54819 * 110.48458 * 295.60131 * 14 13 2 17 17 C 1.54989 * 102.09276 * 262.20890 * 16 14 13 18 18 O 1.44381 * 103.49255 * 322.97422 * 17 16 14 19 19 C 1.43751 * 106.97302 * 40.06310 * 18 17 16 20 20 H 1.09000 * 109.87741 * 92.90687 * 19 18 17 21 21 C 1.52993 * 109.87771 * 214.06509 * 19 18 17 22 22 H 1.08996 * 109.47206 * 294.64350 * 1 2 3 23 23 H 1.08998 * 109.46984 * 54.64538 * 1 2 3 24 24 H 1.08997 * 109.46878 * 174.64217 * 1 2 3 25 25 H 1.08996 * 109.47118 * 295.00221 * 4 2 1 26 26 H 1.09004 * 109.47206 * 55.00275 * 4 2 1 27 27 H 0.97000 * 120.00108 * 180.02562 * 8 7 5 28 28 H 1.00903 * 110.99232 * 26.20868 * 13 2 1 29 29 H 1.09002 * 109.46605 * 178.01791 * 15 14 13 30 30 H 1.08996 * 109.47233 * 298.01459 * 15 14 13 31 31 H 1.08992 * 109.46861 * 58.02064 * 15 14 13 32 32 H 1.09003 * 110.90497 * 20.40626 * 16 14 13 33 33 H 1.09000 * 110.90305 * 144.00873 * 16 14 13 34 34 H 1.08993 * 110.62395 * 81.47592 * 17 16 14 35 35 H 1.09003 * 110.61636 * 204.47696 * 17 16 14 36 36 H 1.09001 * 109.47112 * 177.83121 * 21 19 18 37 37 H 1.09004 * 109.47449 * 297.83034 * 21 19 18 38 38 H 1.08996 * 109.47628 * 57.82990 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3127 6 1 4.0790 -0.0861 -0.5391 7 6 4.2304 -1.1927 -2.3582 8 7 3.5763 -1.8362 -3.3004 9 14 6.0921 -1.0614 -2.4366 10 1 6.5838 -0.2919 -1.2656 11 1 6.6855 -2.4226 -2.4196 12 1 6.4871 -0.3649 -3.6872 13 7 2.0197 -0.6925 1.1995 14 6 2.3693 0.2670 2.2554 15 6 1.1589 1.1289 2.6200 16 6 3.5537 1.1579 1.8074 17 6 4.7614 0.4521 2.4747 18 8 4.2339 0.0094 3.7437 19 6 2.9010 -0.4703 3.4997 20 1 2.9218 -1.5441 3.3135 21 6 2.0097 -0.1656 4.7053 22 1 -0.3633 0.4285 0.9340 23 1 -0.3633 0.5946 -0.8381 24 1 -0.3633 -1.0232 -0.0960 25 1 1.7516 -1.7715 -1.2055 26 1 1.6054 -0.2618 -2.1370 27 1 4.0607 -2.2430 -4.0358 28 1 1.3433 -1.3640 1.5307 29 1 1.4276 1.8094 3.4280 30 1 0.8471 1.7047 1.7486 31 1 0.3398 0.4866 2.9432 32 1 3.6530 1.1559 0.7219 33 1 3.4401 2.1743 2.1845 34 1 5.0872 -0.3989 1.8766 35 1 5.5818 1.1541 2.6240 36 1 0.9922 -0.4973 4.4980 37 1 2.3914 -0.6901 5.5813 38 1 2.0102 0.9076 4.8956 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591032724.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:13 Heat of formation + Delta-G solvation = -72.032939 kcal Electronic energy + Delta-G solvation = -17175.015925 eV Core-core repulsion = 14630.323135 eV Total energy + Delta-G solvation = -2544.692789 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.17333 -37.92764 -35.12412 -33.74891 -32.29411 -30.18880 -29.21500 -28.09268 -25.40301 -25.01482 -23.39643 -20.95254 -20.07175 -18.60137 -17.59070 -16.79186 -16.52394 -16.16259 -15.66973 -15.25558 -14.90973 -14.51686 -14.38556 -13.66015 -13.52975 -13.39624 -13.20615 -13.11890 -13.03362 -12.64253 -12.45466 -12.37595 -12.08101 -11.92838 -11.80847 -11.77767 -11.32140 -11.01335 -10.88973 -10.55730 -10.46502 -9.00109 -8.07454 -6.10865 1.39424 1.41359 1.52378 2.47409 2.98431 3.23172 3.34547 3.60895 3.95664 4.05331 4.27364 4.34097 4.38873 4.42760 4.51519 4.59003 4.67520 4.68649 4.85092 4.90345 4.94325 4.97970 5.06001 5.12337 5.20582 5.25323 5.28366 5.37111 5.45119 5.59016 5.72305 5.94506 5.98569 6.39404 6.54748 6.78654 7.04886 7.54469 9.05281 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026626 B = 0.009677 C = 0.007666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.344995 B = 2892.860435 C = 3651.655137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.103 3.897 3 H 0.061 0.939 4 C 0.037 3.963 5 C -0.491 4.491 6 H 0.068 0.932 7 C -0.009 4.009 8 N -0.943 5.943 9 Si 0.948 3.052 10 H -0.260 1.260 11 H -0.288 1.288 12 H -0.284 1.284 13 N -0.669 5.669 14 C 0.088 3.912 15 C -0.168 4.168 16 C -0.150 4.150 17 C 0.053 3.947 18 O -0.392 6.392 19 C 0.078 3.922 20 H 0.059 0.941 21 C -0.143 4.143 22 H 0.076 0.924 23 H 0.053 0.947 24 H 0.049 0.951 25 H -0.013 1.013 26 H -0.013 1.013 27 H 0.256 0.744 28 H 0.338 0.662 29 H 0.075 0.925 30 H 0.056 0.944 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.042 0.958 35 H 0.102 0.898 36 H 0.085 0.915 37 H 0.060 0.940 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.499 6.317 14.225 16.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.006 4.006 3 H 0.079 0.921 4 C 0.000 4.000 5 C -0.529 4.529 6 H 0.086 0.914 7 C -0.204 4.204 8 N -0.586 5.586 9 Si 0.775 3.225 10 H -0.184 1.184 11 H -0.214 1.214 12 H -0.210 1.210 13 N -0.300 5.300 14 C -0.004 4.004 15 C -0.226 4.226 16 C -0.188 4.188 17 C -0.023 4.023 18 O -0.311 6.311 19 C 0.020 3.980 20 H 0.077 0.923 21 C -0.200 4.200 22 H 0.095 0.905 23 H 0.072 0.928 24 H 0.068 0.932 25 H 0.005 0.995 26 H 0.006 0.994 27 H 0.065 0.935 28 H 0.157 0.843 29 H 0.094 0.906 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.106 0.894 34 H 0.060 0.940 35 H 0.120 0.880 36 H 0.104 0.896 37 H 0.079 0.921 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.708 6.179 14.057 15.796 hybrid contribution 0.118 -0.197 -0.780 0.814 sum -3.590 5.981 13.277 14.998 Atomic orbital electron populations 1.22563 0.96437 1.01770 1.02400 1.21415 0.92195 0.96714 0.90313 0.92057 1.19029 0.95215 0.94065 0.91739 1.21656 0.93356 1.31661 1.06250 0.91420 1.25846 1.02459 0.96059 0.96082 1.70111 1.36796 1.38501 1.13191 0.85642 0.81298 0.77540 0.78063 1.18418 1.21416 1.21002 1.60519 1.48392 1.16527 1.04567 1.22270 0.95433 0.91932 0.90749 1.22676 0.97504 1.00411 1.02048 1.23327 0.94443 0.98908 1.02110 1.23431 0.97007 0.97785 0.84123 1.88773 1.29163 1.83113 1.30073 1.22850 0.82849 0.97460 0.94798 0.92311 1.22013 0.98925 1.02986 0.96058 0.90533 0.92817 0.93156 0.99507 0.99438 0.93532 0.84284 0.90634 0.92529 0.90890 0.90421 0.89389 0.93951 0.87974 0.89612 0.92067 0.91052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.33 8.74 71.98 0.63 -4.70 16 2 C 0.10 3.93 1.59 44.91 0.07 4.00 16 3 H 0.06 2.37 5.73 -2.38 -0.01 2.36 16 4 C 0.04 1.91 4.65 29.85 0.14 2.05 16 5 C -0.49 -27.32 8.83 25.60 0.23 -27.10 16 6 H 0.07 3.62 5.60 -2.91 -0.02 3.60 16 7 C -0.01 -0.53 5.46 84.65 0.46 -0.07 16 8 N -0.94 -58.52 13.29 21.44 0.28 -58.24 16 9 Si 0.95 45.54 29.54 68.60 2.03 47.57 16 10 H -0.26 -11.81 7.11 99.48 0.71 -11.11 16 11 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 12 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 13 N -0.67 -23.34 5.58 -443.43 -2.48 -25.81 16 14 C 0.09 2.54 0.83 4.52 0.00 2.54 16 15 C -0.17 -3.73 5.92 71.98 0.43 -3.31 16 16 C -0.15 -4.73 5.85 31.90 0.19 -4.54 16 17 C 0.05 1.71 7.72 72.66 0.56 2.28 16 18 O -0.39 -12.59 11.19 -148.98 -1.67 -14.26 16 19 C 0.08 2.21 3.82 30.96 0.12 2.33 16 20 H 0.06 1.82 7.93 -2.39 -0.02 1.80 16 21 C -0.14 -2.92 8.40 71.98 0.60 -2.32 16 22 H 0.08 1.88 5.58 -2.39 -0.01 1.87 16 23 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 24 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 25 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 26 H -0.01 -0.71 8.14 -2.38 -0.02 -0.73 16 27 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 28 H 0.34 10.71 8.33 -89.69 -0.75 9.96 16 29 H 0.07 1.47 6.55 -2.39 -0.02 1.45 16 30 H 0.06 1.33 6.05 -2.39 -0.01 1.32 16 31 H 0.07 1.39 6.65 -2.39 -0.02 1.37 16 32 H 0.08 2.94 4.43 -2.39 -0.01 2.93 16 33 H 0.09 2.35 7.87 -2.39 -0.02 2.33 16 34 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.10 2.83 8.14 -2.39 -0.02 2.81 16 36 H 0.09 1.44 6.95 -2.39 -0.02 1.42 16 37 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 38 H 0.07 1.36 6.59 -2.39 -0.02 1.35 16 Total: -1.00 -65.00 286.30 1.90 -63.11 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: 0.30 Total: 16.48 kcal Atomic # 6 Polarization: -32.27 SS G_CDS: 3.43 Total: -28.84 kcal Atomic # 7 Polarization: -81.86 SS G_CDS: -2.19 Total: -84.05 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: -1.67 Total: -14.26 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -65.00 1.90 -63.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591032724.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.925 kcal (2) G-P(sol) polarization free energy of solvation -65.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds