Wall clock time and date at job start Sun Mar 29 2020 22:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47480 * 2 1 4 4 C 1.53003 * 109.47547 * 239.99641 * 2 1 3 5 5 C 1.50699 * 109.47215 * 175.00358 * 4 2 1 6 6 H 1.07994 * 120.00431 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99686 * 180.02562 * 5 4 2 8 8 N 1.31516 * 120.00009 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99738 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47252 * 269.99597 * 9 7 5 11 11 H 1.48494 * 109.47438 * 30.00054 * 9 7 5 12 12 H 1.48510 * 109.46949 * 149.99867 * 9 7 5 13 13 N 1.46909 * 109.46924 * 119.99969 * 2 1 3 14 14 C 1.46901 * 110.99802 * 253.27580 * 13 2 1 15 15 C 1.52997 * 110.43955 * 299.10364 * 14 13 2 16 16 C 1.54809 * 110.48669 * 61.64989 * 14 13 2 17 17 C 1.54993 * 102.09366 * 139.55814 * 16 14 13 18 18 O 1.44375 * 103.48915 * 322.97102 * 17 16 14 19 19 C 1.43748 * 106.97728 * 40.06484 * 18 17 16 20 20 H 1.09000 * 109.88040 * 92.90593 * 19 18 17 21 21 C 1.53001 * 109.88270 * 214.06562 * 19 18 17 22 22 H 1.08999 * 109.46639 * 66.79543 * 1 2 3 23 23 H 1.08999 * 109.47293 * 186.79403 * 1 2 3 24 24 H 1.09004 * 109.47374 * 306.79963 * 1 2 3 25 25 H 1.08997 * 109.46767 * 55.00213 * 4 2 1 26 26 H 1.09004 * 109.46819 * 295.00586 * 4 2 1 27 27 H 0.96995 * 119.99993 * 0.02562 * 8 7 5 28 28 H 1.00894 * 110.99677 * 129.32225 * 13 2 1 29 29 H 1.08998 * 109.47355 * 59.29769 * 15 14 13 30 30 H 1.08998 * 109.47498 * 179.29995 * 15 14 13 31 31 H 1.09008 * 109.46876 * 299.29839 * 15 14 13 32 32 H 1.09004 * 110.90632 * 257.75250 * 16 14 13 33 33 H 1.08997 * 110.91337 * 21.35448 * 16 14 13 34 34 H 1.08995 * 110.62551 * 81.47645 * 17 16 14 35 35 H 1.08998 * 110.61756 * 204.47487 * 17 16 14 36 36 H 1.08998 * 109.47099 * 177.82541 * 21 19 18 37 37 H 1.09004 * 109.46643 * 297.83059 * 21 19 18 38 38 H 1.09001 * 109.47306 * 57.82233 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5420 -0.6150 -1.3125 6 1 4.0790 -0.0863 -0.5391 7 6 4.2304 -1.1928 -2.3581 8 7 3.5764 -1.8371 -3.2998 9 14 6.0920 -1.0605 -2.4371 10 1 6.4699 0.1622 -3.1904 11 1 6.6416 -0.9829 -1.0598 12 1 6.6446 -2.2556 -3.1239 13 7 2.0196 -0.6925 1.1995 14 6 2.5671 0.2626 2.1721 15 6 3.7481 1.0238 1.5667 16 6 1.4694 1.2488 2.6400 17 6 1.7672 1.3707 4.1562 18 8 2.1726 0.0359 4.5282 19 6 2.9949 -0.4657 3.4611 20 1 4.0439 -0.2589 3.6729 21 6 2.7802 -1.9723 3.3030 22 1 -0.3632 0.4049 -0.9445 23 1 -0.3634 -1.0204 0.1216 24 1 -0.3634 0.6156 0.8229 25 1 1.6055 -0.2618 -2.1369 26 1 1.7516 -1.7716 -1.2055 27 1 2.6097 -1.9055 -3.2590 28 1 2.7028 -1.3945 0.9581 29 1 3.4176 1.5588 0.6765 30 1 4.1339 1.7359 2.2962 31 1 4.5344 0.3189 1.2961 32 1 1.5760 2.2135 2.1439 33 1 0.4758 0.8338 2.4709 34 1 2.5752 2.0805 4.3328 35 1 0.8703 1.6653 4.7010 36 1 3.3772 -2.3387 2.4679 37 1 3.0847 -2.4806 4.2180 38 1 1.7259 -2.1710 3.1107 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591032725.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:15 Heat of formation + Delta-G solvation = -59.839819 kcal Electronic energy + Delta-G solvation = -17216.123608 eV Core-core repulsion = 14671.959552 eV Total energy + Delta-G solvation = -2544.164056 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.93700 -36.55784 -33.44524 -31.96144 -31.31702 -28.32047 -27.70892 -26.90720 -23.96415 -22.95010 -22.00163 -20.08601 -18.73804 -16.84250 -15.82088 -15.75520 -15.42414 -14.68066 -14.05223 -13.78103 -13.40412 -12.80264 -12.77283 -12.61749 -12.25501 -11.97407 -11.87721 -11.52635 -11.28056 -11.03062 -10.98406 -10.90311 -10.79571 -10.55852 -10.43747 -10.16751 -10.00147 -9.50702 -9.34428 -8.56065 -8.38020 -7.68368 -6.38764 -4.09644 3.38561 3.40921 3.56274 4.08061 4.49283 4.64469 4.79695 5.07406 5.24247 5.30152 5.38544 5.53869 5.70487 5.73803 5.74730 5.84154 5.91292 5.94977 6.08277 6.10292 6.21635 6.26611 6.32361 6.35757 6.52247 6.67005 6.68930 6.76634 6.88234 7.13111 7.27186 7.36774 7.92423 8.15701 8.19693 8.43057 8.84682 9.63537 11.00913 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.030067 B = 0.008682 C = 0.007726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.028367 B = 3224.433264 C = 3623.382211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.089 3.911 3 H 0.047 0.953 4 C -0.001 4.001 5 C -0.609 4.609 6 H 0.058 0.942 7 C 0.017 3.983 8 N -0.912 5.912 9 Si 1.065 2.935 10 H -0.289 1.289 11 H -0.289 1.289 12 H -0.284 1.284 13 N -0.664 5.664 14 C 0.088 3.912 15 C -0.173 4.173 16 C -0.144 4.144 17 C 0.049 3.951 18 O -0.376 6.376 19 C 0.085 3.915 20 H 0.062 0.938 21 C -0.139 4.139 22 H 0.044 0.956 23 H 0.052 0.948 24 H 0.041 0.959 25 H 0.010 0.990 26 H 0.013 0.987 27 H 0.270 0.730 28 H 0.355 0.645 29 H 0.070 0.930 30 H 0.046 0.954 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.054 0.946 35 H 0.087 0.913 36 H 0.069 0.931 37 H 0.048 0.952 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.259 5.151 11.833 13.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.020 4.020 3 H 0.065 0.935 4 C -0.039 4.039 5 C -0.647 4.647 6 H 0.076 0.924 7 C -0.187 4.187 8 N -0.548 5.548 9 Si 0.894 3.106 10 H -0.216 1.216 11 H -0.215 1.215 12 H -0.210 1.210 13 N -0.298 5.298 14 C -0.005 4.005 15 C -0.232 4.232 16 C -0.182 4.182 17 C -0.028 4.028 18 O -0.296 6.296 19 C 0.027 3.973 20 H 0.080 0.920 21 C -0.197 4.197 22 H 0.063 0.937 23 H 0.071 0.929 24 H 0.060 0.940 25 H 0.028 0.972 26 H 0.031 0.969 27 H 0.080 0.920 28 H 0.178 0.822 29 H 0.089 0.911 30 H 0.065 0.935 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.107 0.893 34 H 0.072 0.928 35 H 0.105 0.895 36 H 0.088 0.912 37 H 0.067 0.933 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.602 4.556 11.411 12.391 hybrid contribution -0.382 0.933 0.141 1.018 sum -1.984 5.489 11.552 12.942 Atomic orbital electron populations 1.21916 0.96917 1.01134 0.99513 1.21520 0.93063 0.97049 0.90399 0.93493 1.19583 0.96772 0.95345 0.92177 1.22231 0.91855 1.38744 1.11913 0.92412 1.25756 1.06587 0.93559 0.92819 1.70735 1.10480 1.39584 1.33972 0.83586 0.74777 0.76640 0.75558 1.21602 1.21536 1.21007 1.61014 1.41717 1.13962 1.13064 1.22188 0.92960 0.92164 0.93172 1.22593 0.98686 1.00816 1.01068 1.23296 1.00586 0.99126 0.95198 1.23440 0.99167 0.85282 0.94954 1.88842 1.69406 1.29132 1.42177 1.22780 0.93514 0.95415 0.85624 0.91985 1.21730 1.04031 0.93104 1.00817 0.93676 0.92919 0.94013 0.97209 0.96911 0.91963 0.82237 0.91115 0.93475 0.91551 0.90951 0.89325 0.92798 0.89504 0.91224 0.93299 0.90586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 9.30 37.15 0.35 -2.06 16 2 C 0.09 1.77 1.83 -67.71 -0.12 1.65 16 3 H 0.05 0.96 5.52 -51.93 -0.29 0.67 16 4 C 0.00 -0.03 3.69 -27.88 -0.10 -0.13 16 5 C -0.61 -16.12 8.24 -34.44 -0.28 -16.40 16 6 H 0.06 1.46 4.70 -52.49 -0.25 1.21 16 7 C 0.02 0.48 5.46 -17.82 -0.10 0.38 16 8 N -0.91 -27.36 13.65 55.43 0.76 -26.60 16 9 Si 1.07 24.77 29.90 -169.99 -5.08 19.69 16 10 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 N -0.66 -12.20 4.67 -91.51 -0.43 -12.63 16 14 C 0.09 1.42 0.81 -130.07 -0.11 1.31 16 15 C -0.17 -2.88 6.85 37.16 0.25 -2.62 16 16 C -0.14 -2.07 5.31 -24.73 -0.13 -2.20 16 17 C 0.05 0.63 7.72 38.21 0.29 0.93 16 18 O -0.38 -5.92 11.19 -35.23 -0.39 -6.31 16 19 C 0.08 1.31 3.73 -26.15 -0.10 1.22 16 20 H 0.06 0.93 7.70 -51.93 -0.40 0.53 16 21 C -0.14 -2.11 8.51 37.16 0.32 -1.79 16 22 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 24 H 0.04 0.65 6.17 -51.93 -0.32 0.33 16 25 H 0.01 0.25 8.01 -51.93 -0.42 -0.16 16 26 H 0.01 0.33 8.01 -51.93 -0.42 -0.08 16 27 H 0.27 8.11 7.22 -40.82 -0.29 7.81 16 28 H 0.36 7.20 5.83 -39.29 -0.23 6.97 16 29 H 0.07 1.29 5.92 -51.93 -0.31 0.98 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 1.20 7.10 -51.92 -0.37 0.83 16 32 H 0.07 0.98 7.86 -51.93 -0.41 0.57 16 33 H 0.09 1.34 6.07 -51.93 -0.32 1.02 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.07 1.07 6.96 -51.93 -0.36 0.71 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.08 1.22 7.75 -51.93 -0.40 0.82 16 LS Contribution 285.86 15.07 4.31 4.31 Total: -1.00 -28.61 285.86 -6.68 -35.29 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -6.10 Total: 5.99 kcal Atomic # 6 Polarization: -20.00 SS G_CDS: 0.27 Total: -19.73 kcal Atomic # 7 Polarization: -39.56 SS G_CDS: 0.33 Total: -39.23 kcal Atomic # 8 Polarization: -5.92 SS G_CDS: -0.39 Total: -6.31 kcal Atomic # 14 Polarization: 24.77 SS G_CDS: -5.08 Total: 19.69 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -28.61 -6.68 -35.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591032725.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.552 kcal (2) G-P(sol) polarization free energy of solvation -28.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds