Wall clock time and date at job start Sun Mar 29 2020 22:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47480 * 2 1 4 4 C 1.53003 * 109.47547 * 239.99641 * 2 1 3 5 5 C 1.50699 * 109.47215 * 175.00358 * 4 2 1 6 6 H 1.07994 * 120.00431 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99686 * 180.02562 * 5 4 2 8 8 N 1.31516 * 120.00009 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99738 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47252 * 269.99597 * 9 7 5 11 11 H 1.48494 * 109.47438 * 30.00054 * 9 7 5 12 12 H 1.48510 * 109.46949 * 149.99867 * 9 7 5 13 13 N 1.46909 * 109.46924 * 119.99969 * 2 1 3 14 14 C 1.46901 * 110.99802 * 253.27580 * 13 2 1 15 15 C 1.52997 * 110.43955 * 299.10364 * 14 13 2 16 16 C 1.54809 * 110.48669 * 61.64989 * 14 13 2 17 17 C 1.54993 * 102.09366 * 139.55814 * 16 14 13 18 18 O 1.44375 * 103.48915 * 322.97102 * 17 16 14 19 19 C 1.43748 * 106.97728 * 40.06484 * 18 17 16 20 20 H 1.09000 * 109.88040 * 92.90593 * 19 18 17 21 21 C 1.53001 * 109.88270 * 214.06562 * 19 18 17 22 22 H 1.08999 * 109.46639 * 66.79543 * 1 2 3 23 23 H 1.08999 * 109.47293 * 186.79403 * 1 2 3 24 24 H 1.09004 * 109.47374 * 306.79963 * 1 2 3 25 25 H 1.08997 * 109.46767 * 55.00213 * 4 2 1 26 26 H 1.09004 * 109.46819 * 295.00586 * 4 2 1 27 27 H 0.96995 * 119.99993 * 0.02562 * 8 7 5 28 28 H 1.00894 * 110.99677 * 129.32225 * 13 2 1 29 29 H 1.08998 * 109.47355 * 59.29769 * 15 14 13 30 30 H 1.08998 * 109.47498 * 179.29995 * 15 14 13 31 31 H 1.09008 * 109.46876 * 299.29839 * 15 14 13 32 32 H 1.09004 * 110.90632 * 257.75250 * 16 14 13 33 33 H 1.08997 * 110.91337 * 21.35448 * 16 14 13 34 34 H 1.08995 * 110.62551 * 81.47645 * 17 16 14 35 35 H 1.08998 * 110.61756 * 204.47487 * 17 16 14 36 36 H 1.08998 * 109.47099 * 177.82541 * 21 19 18 37 37 H 1.09004 * 109.46643 * 297.83059 * 21 19 18 38 38 H 1.09001 * 109.47306 * 57.82233 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5420 -0.6150 -1.3125 6 1 4.0790 -0.0863 -0.5391 7 6 4.2304 -1.1928 -2.3581 8 7 3.5764 -1.8371 -3.2998 9 14 6.0920 -1.0605 -2.4371 10 1 6.4699 0.1622 -3.1904 11 1 6.6416 -0.9829 -1.0598 12 1 6.6446 -2.2556 -3.1239 13 7 2.0196 -0.6925 1.1995 14 6 2.5671 0.2626 2.1721 15 6 3.7481 1.0238 1.5667 16 6 1.4694 1.2488 2.6400 17 6 1.7672 1.3707 4.1562 18 8 2.1726 0.0359 4.5282 19 6 2.9949 -0.4657 3.4611 20 1 4.0439 -0.2589 3.6729 21 6 2.7802 -1.9723 3.3030 22 1 -0.3632 0.4049 -0.9445 23 1 -0.3634 -1.0204 0.1216 24 1 -0.3634 0.6156 0.8229 25 1 1.6055 -0.2618 -2.1369 26 1 1.7516 -1.7716 -1.2055 27 1 2.6097 -1.9055 -3.2590 28 1 2.7028 -1.3945 0.9581 29 1 3.4176 1.5588 0.6765 30 1 4.1339 1.7359 2.2962 31 1 4.5344 0.3189 1.2961 32 1 1.5760 2.2135 2.1439 33 1 0.4758 0.8338 2.4709 34 1 2.5752 2.0805 4.3328 35 1 0.8703 1.6653 4.7010 36 1 3.3772 -2.3387 2.4679 37 1 3.0847 -2.4806 4.2180 38 1 1.7259 -2.1710 3.1107 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591032725.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:15 Heat of formation + Delta-G solvation = -78.127396 kcal Electronic energy + Delta-G solvation = -17216.916617 eV Core-core repulsion = 14671.959552 eV Total energy + Delta-G solvation = -2544.957065 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.18758 -38.06514 -35.27951 -33.60887 -32.49533 -29.62382 -29.30291 -28.59392 -25.20768 -24.94941 -23.17846 -21.63874 -20.11691 -18.87867 -17.08840 -16.98742 -16.64428 -16.20430 -15.64870 -15.37662 -15.15492 -14.26257 -14.18587 -14.01072 -13.71890 -13.34712 -13.16342 -13.10363 -12.88546 -12.60507 -12.54752 -12.43999 -12.23334 -11.98693 -11.97436 -11.74351 -11.29452 -11.14258 -10.60826 -10.56640 -10.52331 -9.19214 -8.61960 -6.32746 1.50321 1.58180 1.74285 2.55869 2.96541 3.15604 3.31164 3.55477 3.89623 4.05347 4.20684 4.24136 4.33435 4.47210 4.52642 4.56628 4.62247 4.70949 4.72569 4.78130 4.91088 4.95810 5.00083 5.04029 5.11063 5.16946 5.26180 5.29742 5.38442 5.45544 5.49431 5.98841 6.06124 6.25793 6.37085 6.56476 6.65807 7.49252 8.77634 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.030067 B = 0.008682 C = 0.007726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.028367 B = 3224.433264 C = 3623.382211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.100 3.900 3 H 0.046 0.954 4 C 0.003 3.997 5 C -0.607 4.607 6 H 0.070 0.930 7 C -0.039 4.039 8 N -0.944 5.944 9 Si 1.111 2.889 10 H -0.278 1.278 11 H -0.265 1.265 12 H -0.288 1.288 13 N -0.660 5.660 14 C 0.081 3.919 15 C -0.167 4.167 16 C -0.141 4.141 17 C 0.049 3.951 18 O -0.390 6.390 19 C 0.086 3.914 20 H 0.071 0.929 21 C -0.136 4.136 22 H 0.045 0.955 23 H 0.046 0.954 24 H 0.066 0.934 25 H -0.015 1.015 26 H -0.011 1.011 27 H 0.254 0.746 28 H 0.343 0.657 29 H 0.052 0.948 30 H 0.073 0.927 31 H 0.047 0.953 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.109 0.891 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.662 6.521 13.778 15.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.009 4.009 3 H 0.064 0.936 4 C -0.035 4.035 5 C -0.645 4.645 6 H 0.088 0.912 7 C -0.236 4.236 8 N -0.582 5.582 9 Si 0.933 3.067 10 H -0.204 1.204 11 H -0.190 1.190 12 H -0.214 1.214 13 N -0.293 5.293 14 C -0.011 4.011 15 C -0.226 4.226 16 C -0.179 4.179 17 C -0.027 4.027 18 O -0.310 6.310 19 C 0.028 3.972 20 H 0.089 0.911 21 C -0.193 4.193 22 H 0.064 0.936 23 H 0.065 0.935 24 H 0.084 0.916 25 H 0.003 0.997 26 H 0.007 0.993 27 H 0.064 0.936 28 H 0.163 0.837 29 H 0.071 0.929 30 H 0.092 0.908 31 H 0.066 0.934 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.089 0.911 35 H 0.127 0.873 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.027 5.950 13.384 14.683 hybrid contribution -0.613 0.528 -0.425 0.914 sum -1.641 6.478 12.959 14.581 Atomic orbital electron populations 1.21842 0.94998 1.01378 1.00595 1.21338 0.94560 0.96135 0.88914 0.93641 1.19516 0.96081 0.94236 0.93627 1.22626 0.92931 1.37365 1.11529 0.91151 1.27206 1.10683 0.93067 0.92692 1.70874 1.09627 1.42060 1.35605 0.83004 0.70000 0.76762 0.76887 1.20391 1.19000 1.21438 1.61084 1.41614 1.14151 1.12435 1.22340 0.93625 0.92255 0.92868 1.22500 0.98252 1.00753 1.01053 1.23279 0.99313 0.98873 0.96462 1.23634 1.00781 0.84419 0.93892 1.88831 1.69479 1.30579 1.42109 1.22746 0.93989 0.95237 0.85188 0.91132 1.21672 1.03040 0.93450 1.01175 0.93610 0.93451 0.91559 0.99675 0.99294 0.93607 0.83694 0.92892 0.90798 0.93351 0.89903 0.90036 0.91071 0.87322 0.92009 0.91926 0.91834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.46 9.30 71.98 0.67 -3.79 16 2 C 0.10 3.95 1.83 44.91 0.08 4.03 16 3 H 0.05 1.82 5.52 -2.39 -0.01 1.81 16 4 C 0.00 0.15 3.69 29.85 0.11 0.26 16 5 C -0.61 -32.34 8.24 25.60 0.21 -32.12 16 6 H 0.07 3.52 4.70 -2.91 -0.01 3.51 16 7 C -0.04 -2.20 5.46 84.65 0.46 -1.74 16 8 N -0.94 -58.10 13.65 21.45 0.29 -57.80 16 9 Si 1.11 49.48 29.90 68.60 2.05 51.54 16 10 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 11 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 12 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 13 N -0.66 -23.84 4.67 -443.43 -2.07 -25.91 16 14 C 0.08 2.47 0.81 4.52 0.00 2.47 16 15 C -0.17 -5.21 6.85 71.98 0.49 -4.72 16 16 C -0.14 -3.65 5.31 31.89 0.17 -3.48 16 17 C 0.05 1.10 7.72 72.66 0.56 1.66 16 18 O -0.39 -11.14 11.19 -148.98 -1.67 -12.80 16 19 C 0.09 2.49 3.73 30.97 0.12 2.60 16 20 H 0.07 1.93 7.70 -2.39 -0.02 1.91 16 21 C -0.14 -3.95 8.51 71.98 0.61 -3.34 16 22 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 23 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 24 H 0.07 1.95 6.17 -2.38 -0.01 1.93 16 25 H -0.02 -0.82 8.01 -2.39 -0.02 -0.84 16 26 H -0.01 -0.61 8.01 -2.38 -0.02 -0.63 16 27 H 0.25 15.96 7.22 -92.71 -0.67 15.29 16 28 H 0.34 13.90 5.83 -89.70 -0.52 13.38 16 29 H 0.05 1.84 5.92 -2.39 -0.01 1.82 16 30 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.05 1.67 7.10 -2.38 -0.02 1.65 16 32 H 0.08 1.97 7.86 -2.38 -0.02 1.95 16 33 H 0.08 2.24 6.07 -2.39 -0.01 2.22 16 34 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.06 1.87 6.96 -2.39 -0.02 1.85 16 37 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 38 H 0.06 1.99 7.75 -2.39 -0.02 1.97 16 Total: -1.00 -61.52 285.86 2.71 -58.81 By element: Atomic # 1 Polarization: 23.73 SS G_CDS: 0.61 Total: 24.34 kcal Atomic # 6 Polarization: -41.66 SS G_CDS: 3.49 Total: -38.17 kcal Atomic # 7 Polarization: -81.94 SS G_CDS: -1.78 Total: -83.72 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: -1.67 Total: -12.80 kcal Atomic # 14 Polarization: 49.48 SS G_CDS: 2.05 Total: 51.54 kcal Total: -61.52 2.71 -58.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591032725.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.316 kcal (2) G-P(sol) polarization free energy of solvation -61.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds