Wall clock time and date at job start Sun Mar 29 2020 21:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47254 * 2 1 4 4 C 1.52994 * 109.47342 * 239.99267 * 2 1 3 5 5 O 1.42903 * 109.46967 * 60.00423 * 4 2 1 6 6 C 1.53003 * 109.46857 * 119.99766 * 2 1 3 7 7 H 1.08998 * 109.47457 * 180.02562 * 6 2 1 8 8 N 1.46908 * 109.47243 * 300.00430 * 6 2 1 9 9 C 1.46900 * 110.99574 * 236.44209 * 8 6 2 10 10 C 1.50699 * 109.46808 * 185.18969 * 9 8 6 11 11 H 1.08003 * 120.00193 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00192 * 179.97438 * 10 9 8 13 13 N 1.31514 * 119.99750 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 120.00436 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47134 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.47072 * 119.99750 * 14 12 10 17 17 H 1.48493 * 109.47285 * 240.00082 * 14 12 10 18 18 C 1.53005 * 109.47343 * 59.99807 * 6 2 1 19 19 C 1.52997 * 117.49842 * 111.00908 * 18 6 2 20 20 C 1.52996 * 117.49925 * 179.67123 * 18 6 2 21 21 H 1.09002 * 109.47424 * 300.00567 * 1 2 3 22 22 H 1.08999 * 109.46763 * 60.00456 * 1 2 3 23 23 H 1.08999 * 109.47050 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47135 * 179.97438 * 3 2 1 25 25 H 1.09006 * 109.47073 * 299.99772 * 3 2 1 26 26 H 1.09002 * 109.47368 * 59.99399 * 3 2 1 27 27 H 1.08999 * 109.47346 * 180.02562 * 4 2 1 28 28 H 1.08999 * 109.47722 * 300.00414 * 4 2 1 29 29 H 0.96701 * 114.00062 * 179.97438 * 5 4 2 30 30 H 1.00899 * 110.99457 * 0.38513 * 8 6 2 31 31 H 1.09003 * 109.47197 * 305.18958 * 9 8 6 32 32 H 1.09000 * 109.47503 * 65.18891 * 9 8 6 33 33 H 0.96998 * 120.00164 * 179.97438 * 13 12 10 34 34 H 1.09005 * 115.54595 * 325.33913 * 18 6 2 35 35 H 1.09000 * 117.50035 * 215.01052 * 19 18 6 36 36 H 1.08998 * 117.49922 * 0.02581 * 19 18 6 37 37 H 1.08993 * 117.49781 * 359.97438 * 20 18 6 38 38 H 1.08999 * 117.49615 * 145.00360 * 20 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2491 5 8 1.5638 -0.0478 -2.4160 6 6 2.0400 -0.7212 1.2493 7 1 3.1299 -0.7209 1.2496 8 7 1.5502 -0.0287 2.4488 9 6 2.6652 0.3739 3.3163 10 6 2.1214 0.9647 4.5915 11 1 1.0542 1.0346 4.7423 12 6 2.9862 1.4161 5.5659 13 7 4.2857 1.3306 5.3826 14 14 2.3122 2.1479 7.1469 15 1 0.8278 2.1286 7.1079 16 1 2.7868 1.3478 8.3044 17 1 2.7860 3.5483 7.2856 18 6 1.5299 -2.1638 1.2494 19 6 2.5582 -3.2766 1.0374 20 6 1.9405 -3.0581 2.4209 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 3.1300 1.4424 0.0005 25 1 1.6767 1.9563 -0.8901 26 1 1.6766 1.9563 0.8899 27 1 3.1300 -0.7218 -1.2489 28 1 1.6767 -1.7490 -1.2491 29 1 1.8495 -0.4512 -3.2471 30 1 0.9804 0.7660 2.2001 31 1 3.2759 -0.4979 3.5513 32 1 3.2752 1.1170 2.8028 33 1 4.8941 1.6485 6.0678 34 1 0.5352 -2.3107 0.8285 35 1 2.2401 -4.1557 0.4770 36 1 3.5981 -2.9812 0.8983 37 1 2.5743 -2.6190 3.1912 38 1 1.2159 -3.7936 2.7706 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591038304.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:29 Heat of formation + Delta-G solvation = -37.606628 kcal Electronic energy + Delta-G solvation = -16716.873142 eV Core-core repulsion = 14173.673189 eV Total energy + Delta-G solvation = -2543.199952 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.23739 -36.56639 -34.96027 -33.40185 -31.60981 -27.32482 -26.89218 -26.31202 -24.17318 -21.86509 -21.44438 -20.37402 -18.37774 -17.40455 -16.20650 -15.38635 -14.89723 -14.74321 -14.35927 -14.28969 -13.91281 -12.76564 -12.70723 -12.34613 -12.18555 -12.16663 -11.68069 -11.39954 -11.19499 -11.03858 -10.81649 -10.74454 -10.58077 -10.38411 -10.18495 -9.93043 -9.82438 -9.65130 -9.46271 -9.03297 -8.45670 -7.20483 -6.00622 -4.01852 3.32395 3.39741 3.45057 4.22824 4.34288 4.47782 4.90498 5.08602 5.24239 5.26656 5.35208 5.37701 5.54588 5.65413 5.72140 5.78746 5.83814 5.93527 5.98443 6.08275 6.19580 6.30654 6.34291 6.42503 6.47188 6.54296 6.68566 6.70809 6.81856 7.30705 7.44654 7.68637 7.84198 8.17704 8.47726 8.66311 9.08231 9.63110 11.10297 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.030267 B = 0.007182 C = 0.006438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.867019 B = 3897.640857 C = 4347.915001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.072 4.072 3 C -0.140 4.140 4 C 0.090 3.910 5 O -0.572 6.572 6 C 0.125 3.875 7 H 0.054 0.946 8 N -0.677 5.677 9 C 0.196 3.804 10 C -0.509 4.509 11 H 0.062 0.938 12 C 0.055 3.945 13 N -0.899 5.899 14 Si 0.897 3.103 15 H -0.272 1.272 16 H -0.285 1.285 17 H -0.285 1.285 18 C -0.131 4.131 19 C -0.197 4.197 20 C -0.158 4.158 21 H 0.061 0.939 22 H 0.055 0.945 23 H 0.053 0.947 24 H 0.050 0.950 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.040 0.960 28 H 0.049 0.951 29 H 0.372 0.628 30 H 0.330 0.670 31 H 0.025 0.975 32 H -0.015 1.015 33 H 0.260 0.740 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.100 0.900 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.060 -5.622 -12.785 14.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.073 4.073 3 C -0.198 4.198 4 C 0.012 3.988 5 O -0.376 6.376 6 C 0.014 3.986 7 H 0.073 0.927 8 N -0.309 5.309 9 C 0.070 3.930 10 C -0.547 4.547 11 H 0.081 0.919 12 C -0.146 4.146 13 N -0.539 5.539 14 Si 0.725 3.275 15 H -0.197 1.197 16 H -0.211 1.211 17 H -0.212 1.212 18 C -0.150 4.150 19 C -0.235 4.235 20 C -0.195 4.195 21 H 0.080 0.920 22 H 0.074 0.926 23 H 0.072 0.928 24 H 0.069 0.931 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.217 0.783 30 H 0.150 0.850 31 H 0.043 0.957 32 H 0.003 0.997 33 H 0.069 0.931 34 H 0.117 0.883 35 H 0.102 0.898 36 H 0.105 0.895 37 H 0.118 0.882 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.288 -5.751 -11.863 13.863 hybrid contribution 0.541 0.679 0.065 0.870 sum -3.747 -5.073 -11.798 13.378 Atomic orbital electron populations 1.21774 0.93921 1.01683 1.01688 1.20958 0.96914 0.95954 0.93515 1.21825 1.00702 0.95253 1.02008 1.22211 0.96846 0.94813 0.84961 1.86482 1.77552 1.57617 1.15945 1.21031 0.97198 0.91590 0.88750 0.92746 1.60690 1.24100 1.31421 1.14640 1.19635 0.87911 0.94528 0.90958 1.21232 0.93421 1.38931 1.01159 0.91950 1.24983 0.94793 0.96178 0.98675 1.69971 1.01651 1.47696 1.34575 0.86459 0.79183 0.78606 0.83266 1.19672 1.21073 1.21168 1.22357 0.98131 0.91505 1.03039 1.23022 0.98444 1.00453 1.01541 1.22751 1.03238 1.01948 0.91574 0.92019 0.92638 0.92760 0.93131 0.92154 0.92128 0.94134 0.93309 0.78272 0.85030 0.95662 0.99727 0.93064 0.88332 0.89754 0.89498 0.88152 0.89770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.93 7.89 37.16 0.29 -1.64 16 2 C -0.07 -1.10 0.37 -154.51 -0.06 -1.15 16 3 C -0.14 -2.26 8.14 37.15 0.30 -1.96 16 4 C 0.09 1.16 5.67 37.15 0.21 1.37 16 5 O -0.57 -6.92 12.31 -35.23 -0.43 -7.36 16 6 C 0.13 2.19 1.66 -67.70 -0.11 2.08 16 7 H 0.05 1.05 7.30 -51.93 -0.38 0.67 16 8 N -0.68 -14.25 5.89 -107.98 -0.64 -14.88 16 9 C 0.20 5.08 5.10 -4.98 -0.03 5.06 16 10 C -0.51 -14.41 9.36 -34.44 -0.32 -14.73 16 11 H 0.06 1.76 7.81 -52.48 -0.41 1.35 16 12 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 13 N -0.90 -26.93 13.29 55.43 0.74 -26.20 16 14 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 15 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 16 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 17 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 18 C -0.13 -2.06 3.89 -90.62 -0.35 -2.41 16 19 C -0.20 -2.76 10.17 -26.69 -0.27 -3.03 16 20 C -0.16 -2.60 10.13 -26.69 -0.27 -2.87 16 21 H 0.06 0.94 6.66 -51.93 -0.35 0.59 16 22 H 0.05 0.78 7.68 -51.93 -0.40 0.38 16 23 H 0.05 0.74 6.15 -51.93 -0.32 0.42 16 24 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 25 H 0.06 0.92 7.68 -51.93 -0.40 0.52 16 26 H 0.06 1.05 6.68 -51.93 -0.35 0.71 16 27 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.59 7.20 -51.93 -0.37 0.21 16 29 H 0.37 2.75 9.12 45.56 0.42 3.16 16 30 H 0.33 6.78 5.21 -39.29 -0.20 6.57 16 31 H 0.03 0.71 7.61 -51.93 -0.40 0.31 16 32 H -0.02 -0.42 8.14 -51.93 -0.42 -0.84 16 33 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 34 H 0.10 1.46 6.09 -51.93 -0.32 1.15 16 35 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.09 1.23 8.05 -51.93 -0.42 0.81 16 37 H 0.10 1.95 7.62 -51.93 -0.40 1.56 16 38 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 300.08 15.07 4.52 4.52 Total: -1.00 -30.39 300.08 -7.07 -37.46 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -5.54 Total: 7.43 kcal Atomic # 6 Polarization: -17.12 SS G_CDS: -0.70 Total: -17.82 kcal Atomic # 7 Polarization: -41.18 SS G_CDS: 0.10 Total: -41.08 kcal Atomic # 8 Polarization: -6.92 SS G_CDS: -0.43 Total: -7.36 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.39 -7.07 -37.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591038304.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.149 kcal (2) G-P(sol) polarization free energy of solvation -30.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds