Wall clock time and date at job start Sun Mar 29 2020 21:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47254 * 2 1 4 4 C 1.52994 * 109.47342 * 239.99267 * 2 1 3 5 5 O 1.42903 * 109.46967 * 60.00423 * 4 2 1 6 6 C 1.53003 * 109.46857 * 119.99766 * 2 1 3 7 7 H 1.08998 * 109.47457 * 180.02562 * 6 2 1 8 8 N 1.46908 * 109.47243 * 300.00430 * 6 2 1 9 9 C 1.46900 * 110.99574 * 236.44209 * 8 6 2 10 10 C 1.50699 * 109.46808 * 185.18969 * 9 8 6 11 11 H 1.08003 * 120.00193 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00192 * 179.97438 * 10 9 8 13 13 N 1.31514 * 119.99750 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 120.00436 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47134 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.47072 * 119.99750 * 14 12 10 17 17 H 1.48493 * 109.47285 * 240.00082 * 14 12 10 18 18 C 1.53005 * 109.47343 * 59.99807 * 6 2 1 19 19 C 1.52997 * 117.49842 * 111.00908 * 18 6 2 20 20 C 1.52996 * 117.49925 * 179.67123 * 18 6 2 21 21 H 1.09002 * 109.47424 * 300.00567 * 1 2 3 22 22 H 1.08999 * 109.46763 * 60.00456 * 1 2 3 23 23 H 1.08999 * 109.47050 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47135 * 179.97438 * 3 2 1 25 25 H 1.09006 * 109.47073 * 299.99772 * 3 2 1 26 26 H 1.09002 * 109.47368 * 59.99399 * 3 2 1 27 27 H 1.08999 * 109.47346 * 180.02562 * 4 2 1 28 28 H 1.08999 * 109.47722 * 300.00414 * 4 2 1 29 29 H 0.96701 * 114.00062 * 179.97438 * 5 4 2 30 30 H 1.00899 * 110.99457 * 0.38513 * 8 6 2 31 31 H 1.09003 * 109.47197 * 305.18958 * 9 8 6 32 32 H 1.09000 * 109.47503 * 65.18891 * 9 8 6 33 33 H 0.96998 * 120.00164 * 179.97438 * 13 12 10 34 34 H 1.09005 * 115.54595 * 325.33913 * 18 6 2 35 35 H 1.09000 * 117.50035 * 215.01052 * 19 18 6 36 36 H 1.08998 * 117.49922 * 0.02581 * 19 18 6 37 37 H 1.08993 * 117.49781 * 359.97438 * 20 18 6 38 38 H 1.08999 * 117.49615 * 145.00360 * 20 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2491 5 8 1.5638 -0.0478 -2.4160 6 6 2.0400 -0.7212 1.2493 7 1 3.1299 -0.7209 1.2496 8 7 1.5502 -0.0287 2.4488 9 6 2.6652 0.3739 3.3163 10 6 2.1214 0.9647 4.5915 11 1 1.0542 1.0346 4.7423 12 6 2.9862 1.4161 5.5659 13 7 4.2857 1.3306 5.3826 14 14 2.3122 2.1479 7.1469 15 1 0.8278 2.1286 7.1079 16 1 2.7868 1.3478 8.3044 17 1 2.7860 3.5483 7.2856 18 6 1.5299 -2.1638 1.2494 19 6 2.5582 -3.2766 1.0374 20 6 1.9405 -3.0581 2.4209 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 3.1300 1.4424 0.0005 25 1 1.6767 1.9563 -0.8901 26 1 1.6766 1.9563 0.8899 27 1 3.1300 -0.7218 -1.2489 28 1 1.6767 -1.7490 -1.2491 29 1 1.8495 -0.4512 -3.2471 30 1 0.9804 0.7660 2.2001 31 1 3.2759 -0.4979 3.5513 32 1 3.2752 1.1170 2.8028 33 1 4.8941 1.6485 6.0678 34 1 0.5352 -2.3107 0.8285 35 1 2.2401 -4.1557 0.4770 36 1 3.5981 -2.9812 0.8983 37 1 2.5743 -2.6190 3.1912 38 1 1.2159 -3.7936 2.7706 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591038304.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:29 Heat of formation + Delta-G solvation = -59.365954 kcal Electronic energy + Delta-G solvation = -16717.816697 eV Core-core repulsion = 14173.673189 eV Total energy + Delta-G solvation = -2544.143508 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.55480 -37.66204 -36.37636 -35.21458 -33.47322 -29.07638 -28.26533 -27.58871 -25.77565 -23.43661 -23.08292 -21.66851 -19.77835 -18.51661 -18.20492 -16.88752 -16.38755 -16.09310 -15.94973 -15.65235 -15.23131 -14.35080 -14.31688 -14.04441 -13.64774 -13.43866 -13.16215 -12.97485 -12.76833 -12.68136 -12.47414 -12.30004 -12.08586 -11.82883 -11.75122 -11.43827 -11.15277 -10.94322 -10.84330 -10.68770 -10.61183 -9.01218 -8.21803 -6.32396 1.39653 1.40250 1.54246 2.39420 2.95367 3.11122 3.30625 3.65479 3.79079 3.93370 4.11089 4.18644 4.29870 4.35465 4.43596 4.60304 4.60870 4.69568 4.81575 4.84317 4.88450 5.00565 5.07148 5.11375 5.16840 5.23415 5.28003 5.34617 5.40207 5.44892 5.55025 5.64755 6.06531 6.51971 6.77582 6.92243 6.99875 7.38660 8.89505 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.030267 B = 0.007182 C = 0.006438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.867019 B = 3897.640857 C = 4347.915001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.070 4.070 3 C -0.136 4.136 4 C 0.098 3.902 5 O -0.582 6.582 6 C 0.126 3.874 7 H 0.029 0.971 8 N -0.673 5.673 9 C 0.218 3.782 10 C -0.529 4.529 11 H 0.062 0.938 12 C 0.001 3.999 13 N -0.935 5.935 14 Si 0.971 3.029 15 H -0.263 1.263 16 H -0.279 1.279 17 H -0.278 1.278 18 C -0.134 4.134 19 C -0.168 4.168 20 C -0.179 4.179 21 H 0.047 0.953 22 H 0.063 0.937 23 H 0.067 0.933 24 H 0.037 0.963 25 H 0.072 0.928 26 H 0.039 0.961 27 H 0.039 0.961 28 H 0.066 0.934 29 H 0.394 0.606 30 H 0.333 0.667 31 H -0.004 1.004 32 H -0.045 1.045 33 H 0.264 0.736 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.082 0.918 37 H 0.058 0.942 38 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.467 -6.421 -13.794 16.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.071 4.071 3 C -0.194 4.194 4 C 0.020 3.980 5 O -0.390 6.390 6 C 0.015 3.985 7 H 0.047 0.953 8 N -0.305 5.305 9 C 0.090 3.910 10 C -0.568 4.568 11 H 0.080 0.920 12 C -0.197 4.197 13 N -0.576 5.576 14 Si 0.795 3.205 15 H -0.187 1.187 16 H -0.204 1.204 17 H -0.203 1.203 18 C -0.152 4.152 19 C -0.205 4.205 20 C -0.217 4.217 21 H 0.066 0.934 22 H 0.082 0.918 23 H 0.085 0.915 24 H 0.056 0.944 25 H 0.091 0.909 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.084 0.916 29 H 0.244 0.756 30 H 0.153 0.847 31 H 0.014 0.986 32 H -0.027 1.027 33 H 0.073 0.927 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.100 0.900 37 H 0.077 0.923 38 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -5.702 -6.565 -12.909 15.564 hybrid contribution 1.014 0.921 0.313 1.405 sum -4.689 -5.644 -12.596 14.577 Atomic orbital electron populations 1.21717 0.92897 1.02420 1.01396 1.20886 0.97604 0.94973 0.93665 1.21782 0.99835 0.96276 1.01497 1.22008 0.96674 0.95071 0.84254 1.86416 1.77668 1.58156 1.16777 1.21060 0.95856 0.92980 0.88581 0.95273 1.60613 1.22329 1.31257 1.16284 1.19194 0.88467 0.92155 0.91189 1.21576 0.93521 1.39377 1.02307 0.91988 1.25929 0.95000 0.96398 1.02387 1.70099 1.03050 1.48463 1.35942 0.85316 0.78836 0.77842 0.78497 1.18714 1.20428 1.20344 1.22334 0.99639 0.90240 1.03027 1.23092 0.97761 1.00427 0.99216 1.22684 1.04053 1.03100 0.91820 0.93351 0.91835 0.91458 0.94407 0.90926 0.94209 0.94289 0.91575 0.75620 0.84708 0.98630 1.02691 0.92740 0.86375 0.86237 0.89975 0.92291 0.88067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.43 7.89 71.98 0.57 -2.87 16 2 C -0.07 -2.06 0.37 -52.18 -0.02 -2.08 16 3 C -0.14 -4.44 8.14 71.98 0.59 -3.85 16 4 C 0.10 2.30 5.67 71.98 0.41 2.71 16 5 O -0.58 -12.35 12.31 -148.98 -1.83 -14.19 16 6 C 0.13 4.44 1.66 44.92 0.07 4.51 16 7 H 0.03 1.18 7.30 -2.39 -0.02 1.16 16 8 N -0.67 -29.25 5.89 -495.55 -2.92 -32.17 16 9 C 0.22 11.88 5.10 85.56 0.44 12.32 16 10 C -0.53 -30.85 9.36 25.60 0.24 -30.61 16 11 H 0.06 3.54 7.81 -2.91 -0.02 3.52 16 12 C 0.00 0.04 5.46 84.65 0.46 0.50 16 13 N -0.93 -57.50 13.29 21.45 0.28 -57.22 16 14 Si 0.97 45.23 29.54 68.60 2.03 47.26 16 15 H -0.26 -11.78 7.11 99.48 0.71 -11.08 16 16 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 17 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 18 C -0.13 -4.00 3.89 -10.79 -0.04 -4.04 16 19 C -0.17 -4.33 10.17 30.62 0.31 -4.02 16 20 C -0.18 -5.84 10.13 30.62 0.31 -5.53 16 21 H 0.05 1.42 6.66 -2.39 -0.02 1.41 16 22 H 0.06 1.63 7.68 -2.39 -0.02 1.61 16 23 H 0.07 1.64 6.15 -2.39 -0.01 1.62 16 24 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.07 2.15 7.68 -2.38 -0.02 2.14 16 26 H 0.04 1.43 6.68 -2.39 -0.02 1.41 16 27 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.07 1.34 7.20 -2.39 -0.02 1.33 16 29 H 0.39 4.48 9.12 -74.06 -0.68 3.80 16 30 H 0.33 14.06 5.21 -89.69 -0.47 13.59 16 31 H 0.00 -0.26 7.61 -2.39 -0.02 -0.28 16 32 H -0.04 -2.64 8.14 -2.39 -0.02 -2.66 16 33 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 34 H 0.12 3.12 6.09 -2.38 -0.01 3.11 16 35 H 0.12 2.32 8.14 -2.39 -0.02 2.30 16 36 H 0.08 2.22 8.05 -2.39 -0.02 2.20 16 37 H 0.06 2.41 7.62 -2.39 -0.02 2.39 16 38 H 0.10 2.90 8.14 -2.39 -0.02 2.88 16 Total: -1.00 -66.81 300.08 0.79 -66.02 By element: Atomic # 1 Polarization: 23.35 SS G_CDS: -0.10 Total: 23.25 kcal Atomic # 6 Polarization: -36.29 SS G_CDS: 3.33 Total: -32.95 kcal Atomic # 7 Polarization: -86.75 SS G_CDS: -2.63 Total: -89.38 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: -1.83 Total: -14.19 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -66.81 0.79 -66.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591038304.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.650 kcal (2) G-P(sol) polarization free energy of solvation -66.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds