Wall clock time and date at job start Sun Mar 29 2020 22:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47385 * 2 1 4 4 C 1.53004 * 109.47085 * 120.00061 * 2 1 3 5 5 C 1.50699 * 109.47322 * 183.01005 * 4 2 1 6 6 H 1.07997 * 119.99854 * 5.12929 * 5 4 2 7 7 C 1.37877 * 120.00183 * 185.13709 * 5 4 2 8 8 N 1.31514 * 120.00154 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99945 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47533 * 90.00037 * 9 7 5 11 11 H 1.48504 * 109.46942 * 209.99522 * 9 7 5 12 12 H 1.48496 * 109.47123 * 329.99188 * 9 7 5 13 13 N 1.46896 * 109.47280 * 239.99504 * 2 1 3 14 14 C 1.46847 * 110.99667 * 69.86178 * 13 2 1 15 15 C 1.53038 * 109.52307 * 174.15639 * 14 13 2 16 16 H 1.08995 * 109.53866 * 299.22008 * 15 14 13 17 17 O 1.42898 * 109.50354 * 179.11597 * 15 14 13 18 18 C 1.53126 * 109.27595 * 59.18105 * 15 14 13 19 19 C 1.53120 * 109.16129 * 302.34584 * 18 15 14 20 20 H 1.08998 * 109.49887 * 297.71406 * 19 18 15 21 21 C 1.52993 * 109.50475 * 177.63485 * 19 18 15 22 22 C 1.46923 * 110.99185 * 305.63402 * 13 2 1 23 23 H 1.09001 * 109.46749 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47098 * 299.99907 * 1 2 3 25 25 H 1.08997 * 109.46737 * 60.00164 * 1 2 3 26 26 H 1.09005 * 109.46883 * 303.00507 * 4 2 1 27 27 H 1.08993 * 109.47499 * 63.00785 * 4 2 1 28 28 H 0.96994 * 120.00366 * 179.97438 * 8 7 5 29 29 H 1.09001 * 109.46389 * 54.14746 * 14 13 2 30 30 H 1.08997 * 109.45586 * 294.16909 * 14 13 2 31 31 H 0.96701 * 113.99924 * 60.20803 * 17 15 14 32 32 H 1.08997 * 109.52013 * 182.43868 * 18 15 14 33 33 H 1.09001 * 109.52009 * 62.24964 * 18 15 14 34 34 H 1.09003 * 109.47208 * 60.07368 * 21 19 18 35 35 H 1.08995 * 109.47229 * 180.02562 * 21 19 18 36 36 H 1.08998 * 109.47377 * 300.07748 * 21 19 18 37 37 H 1.08999 * 109.45266 * 65.83365 * 22 13 2 38 38 H 1.09007 * 109.51799 * 305.84213 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5452 -0.6570 1.2872 6 1 4.0799 -0.0826 0.5453 7 6 4.2395 -1.3317 2.2689 8 7 3.5883 -2.0310 3.1725 9 14 6.1052 -1.2526 2.3154 10 1 6.5313 -0.1023 3.1523 11 1 6.6397 -2.5111 2.8949 12 1 6.6279 -1.0818 0.9360 13 7 2.0197 -0.6926 -1.1993 14 6 1.7501 0.0953 -2.4089 15 6 2.3997 -0.5836 -3.6168 16 1 3.4779 -0.6393 -3.4675 17 8 2.1197 0.1724 -4.7967 18 6 1.8309 -1.9972 -3.7686 19 6 2.0821 -2.7813 -2.4776 20 1 3.1553 -2.8715 -2.3097 21 6 1.4649 -4.1760 -2.5987 22 6 1.4417 -2.0394 -1.3022 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.6333 -0.2395 2.1384 27 1 1.7214 -1.7633 1.2228 28 1 4.0767 -2.5059 3.8629 29 1 2.1634 1.0969 -2.2895 30 1 0.6736 0.1629 -2.5656 31 1 2.4521 1.0801 -4.7703 32 1 2.3222 -2.5000 -4.6016 33 1 0.7589 -1.9401 -3.9574 34 1 1.9204 -4.7033 -3.4369 35 1 1.6436 -4.7335 -1.6793 36 1 0.3918 -4.0851 -2.7666 37 1 0.3666 -1.9616 -1.4642 38 1 1.6310 -2.5884 -0.3797 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591052103.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:37 Heat of formation + Delta-G solvation = -65.992716 kcal Electronic energy + Delta-G solvation = -16939.097034 eV Core-core repulsion = 14394.666169 eV Total energy + Delta-G solvation = -2544.430866 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.34488 -36.48608 -34.76497 -32.64314 -30.87163 -29.02112 -27.34272 -26.35242 -24.09615 -22.78599 -21.44643 -19.73832 -18.71428 -16.86610 -16.15220 -15.59825 -14.95559 -14.48209 -14.35652 -14.03239 -13.63011 -13.12459 -12.77306 -12.53566 -12.07686 -11.81119 -11.74170 -11.69238 -11.44848 -11.22913 -11.08861 -10.62703 -10.51497 -10.41954 -10.21184 -10.05760 -9.91579 -9.64328 -9.13754 -8.96620 -8.25848 -7.47395 -5.88746 -3.86308 3.38500 3.44909 3.49751 4.16931 4.55946 4.64492 5.07098 5.12811 5.29250 5.39878 5.48534 5.54028 5.73855 5.76172 5.85276 5.88332 5.90758 5.95005 6.05733 6.10087 6.12527 6.20143 6.33097 6.38940 6.48191 6.61021 6.70812 6.77986 6.97646 7.53128 7.61319 7.76558 7.93413 8.02068 8.12302 8.57649 9.18891 9.75083 11.23238 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.024486 B = 0.008251 C = 0.008030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.237061 B = 3392.755868 C = 3486.294150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.088 3.912 3 H 0.068 0.932 4 C 0.029 3.971 5 C -0.488 4.488 6 H 0.059 0.941 7 C 0.051 3.949 8 N -0.904 5.904 9 Si 0.888 3.112 10 H -0.284 1.284 11 H -0.290 1.290 12 H -0.274 1.274 13 N -0.506 5.506 14 C 0.024 3.976 15 C 0.105 3.895 16 H 0.064 0.936 17 O -0.574 6.574 18 C -0.103 4.103 19 C -0.089 4.089 20 H 0.082 0.918 21 C -0.142 4.142 22 C 0.060 3.940 23 H 0.053 0.947 24 H 0.056 0.944 25 H 0.039 0.961 26 H 0.015 0.985 27 H 0.023 0.977 28 H 0.257 0.743 29 H 0.068 0.932 30 H 0.031 0.969 31 H 0.375 0.625 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.052 0.948 35 H 0.060 0.940 36 H 0.050 0.950 37 H 0.024 0.976 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.542 1.012 -11.677 12.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.020 4.020 3 H 0.086 0.914 4 C -0.008 4.008 5 C -0.526 4.526 6 H 0.077 0.923 7 C -0.149 4.149 8 N -0.545 5.545 9 Si 0.717 3.283 10 H -0.211 1.211 11 H -0.216 1.216 12 H -0.199 1.199 13 N -0.230 5.230 14 C -0.105 4.105 15 C 0.046 3.954 16 H 0.082 0.918 17 O -0.378 6.378 18 C -0.141 4.141 19 C -0.108 4.108 20 H 0.101 0.899 21 C -0.200 4.200 22 C -0.068 4.068 23 H 0.072 0.928 24 H 0.075 0.925 25 H 0.058 0.942 26 H 0.033 0.967 27 H 0.042 0.958 28 H 0.067 0.933 29 H 0.086 0.914 30 H 0.049 0.951 31 H 0.222 0.778 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.069 0.931 37 H 0.042 0.958 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.278 0.293 -11.673 12.436 hybrid contribution 0.404 0.665 0.279 0.826 sum -3.874 0.958 -11.394 12.073 Atomic orbital electron populations 1.22525 0.99768 1.01410 1.00623 1.21908 0.90062 0.98194 0.91839 0.91417 1.19212 0.96403 0.95545 0.89610 1.21130 0.91467 1.29049 1.10985 0.92289 1.24990 0.97977 0.95884 0.96000 1.69957 1.35125 1.33082 1.16326 0.86648 0.86505 0.77089 0.78050 1.21059 1.21568 1.19923 1.61985 1.58682 1.01669 1.00713 1.22746 0.98329 0.97650 0.91732 1.21837 0.98861 0.91317 0.83345 0.91769 1.86469 1.82975 1.28369 1.40009 1.21567 1.00989 0.93518 0.97992 1.21125 1.01760 0.94148 0.93721 0.89937 1.21743 1.00297 0.96161 1.01794 1.22188 0.94996 0.90498 0.99085 0.92772 0.92535 0.94224 0.96676 0.95837 0.93333 0.91375 0.95068 0.77838 0.91812 0.92033 0.92874 0.92101 0.93098 0.95752 0.89077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.20 8.45 37.16 0.31 -2.89 16 2 C 0.09 1.78 2.28 -67.71 -0.15 1.63 16 3 H 0.07 1.39 7.99 -51.93 -0.41 0.97 16 4 C 0.03 0.74 4.34 -27.88 -0.12 0.62 16 5 C -0.49 -13.53 8.78 -34.44 -0.30 -13.83 16 6 H 0.06 1.64 7.75 -52.49 -0.41 1.23 16 7 C 0.05 1.45 5.46 -17.82 -0.10 1.35 16 8 N -0.90 -27.04 13.29 55.43 0.74 -26.31 16 9 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 10 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 12 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 13 N -0.51 -9.60 4.27 -226.63 -0.97 -10.56 16 14 C 0.02 0.39 4.75 -3.83 -0.02 0.37 16 15 C 0.11 1.55 3.63 -26.65 -0.10 1.46 16 16 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 17 O -0.57 -7.74 13.32 -35.23 -0.47 -8.20 16 18 C -0.10 -1.48 4.94 -26.60 -0.13 -1.61 16 19 C -0.09 -1.36 2.88 -90.54 -0.26 -1.62 16 20 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 21 C -0.14 -1.85 9.20 37.15 0.34 -1.51 16 22 C 0.06 1.07 3.84 -3.79 -0.01 1.06 16 23 H 0.05 0.94 6.46 -51.93 -0.34 0.60 16 24 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.04 0.62 6.81 -51.93 -0.35 0.27 16 26 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.02 0.63 6.29 -51.93 -0.33 0.30 16 28 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 29 H 0.07 1.03 8.02 -51.93 -0.42 0.62 16 30 H 0.03 0.50 6.87 -51.93 -0.36 0.14 16 31 H 0.37 3.52 9.08 45.56 0.41 3.93 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.02 0.41 6.58 -51.93 -0.34 0.07 16 38 H 0.09 1.87 6.16 -51.93 -0.32 1.55 16 LS Contribution 293.87 15.07 4.43 4.43 Total: -1.00 -30.23 293.87 -7.63 -37.86 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -5.80 Total: 0.84 kcal Atomic # 6 Polarization: -14.45 SS G_CDS: -0.54 Total: -14.99 kcal Atomic # 7 Polarization: -36.64 SS G_CDS: -0.23 Total: -36.87 kcal Atomic # 8 Polarization: -7.74 SS G_CDS: -0.47 Total: -8.20 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.23 -7.63 -37.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591052103.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.135 kcal (2) G-P(sol) polarization free energy of solvation -30.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds