Wall clock time and date at job start Sun Mar 29 2020 22:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47385 * 2 1 4 4 C 1.53004 * 109.47085 * 120.00061 * 2 1 3 5 5 C 1.50699 * 109.47322 * 183.01005 * 4 2 1 6 6 H 1.07997 * 119.99854 * 5.12929 * 5 4 2 7 7 C 1.37877 * 120.00183 * 185.13709 * 5 4 2 8 8 N 1.31514 * 120.00154 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99945 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47533 * 90.00037 * 9 7 5 11 11 H 1.48504 * 109.46942 * 209.99522 * 9 7 5 12 12 H 1.48496 * 109.47123 * 329.99188 * 9 7 5 13 13 N 1.46896 * 109.47280 * 239.99504 * 2 1 3 14 14 C 1.46847 * 110.99667 * 69.86178 * 13 2 1 15 15 C 1.53038 * 109.52307 * 174.15639 * 14 13 2 16 16 H 1.08995 * 109.53866 * 299.22008 * 15 14 13 17 17 O 1.42898 * 109.50354 * 179.11597 * 15 14 13 18 18 C 1.53126 * 109.27595 * 59.18105 * 15 14 13 19 19 C 1.53120 * 109.16129 * 302.34584 * 18 15 14 20 20 H 1.08998 * 109.49887 * 297.71406 * 19 18 15 21 21 C 1.52993 * 109.50475 * 177.63485 * 19 18 15 22 22 C 1.46923 * 110.99185 * 305.63402 * 13 2 1 23 23 H 1.09001 * 109.46749 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47098 * 299.99907 * 1 2 3 25 25 H 1.08997 * 109.46737 * 60.00164 * 1 2 3 26 26 H 1.09005 * 109.46883 * 303.00507 * 4 2 1 27 27 H 1.08993 * 109.47499 * 63.00785 * 4 2 1 28 28 H 0.96994 * 120.00366 * 179.97438 * 8 7 5 29 29 H 1.09001 * 109.46389 * 54.14746 * 14 13 2 30 30 H 1.08997 * 109.45586 * 294.16909 * 14 13 2 31 31 H 0.96701 * 113.99924 * 60.20803 * 17 15 14 32 32 H 1.08997 * 109.52013 * 182.43868 * 18 15 14 33 33 H 1.09001 * 109.52009 * 62.24964 * 18 15 14 34 34 H 1.09003 * 109.47208 * 60.07368 * 21 19 18 35 35 H 1.08995 * 109.47229 * 180.02562 * 21 19 18 36 36 H 1.08998 * 109.47377 * 300.07748 * 21 19 18 37 37 H 1.08999 * 109.45266 * 65.83365 * 22 13 2 38 38 H 1.09007 * 109.51799 * 305.84213 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5452 -0.6570 1.2872 6 1 4.0799 -0.0826 0.5453 7 6 4.2395 -1.3317 2.2689 8 7 3.5883 -2.0310 3.1725 9 14 6.1052 -1.2526 2.3154 10 1 6.5313 -0.1023 3.1523 11 1 6.6397 -2.5111 2.8949 12 1 6.6279 -1.0818 0.9360 13 7 2.0197 -0.6926 -1.1993 14 6 1.7501 0.0953 -2.4089 15 6 2.3997 -0.5836 -3.6168 16 1 3.4779 -0.6393 -3.4675 17 8 2.1197 0.1724 -4.7967 18 6 1.8309 -1.9972 -3.7686 19 6 2.0821 -2.7813 -2.4776 20 1 3.1553 -2.8715 -2.3097 21 6 1.4649 -4.1760 -2.5987 22 6 1.4417 -2.0394 -1.3022 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.6333 -0.2395 2.1384 27 1 1.7214 -1.7633 1.2228 28 1 4.0767 -2.5059 3.8629 29 1 2.1634 1.0969 -2.2895 30 1 0.6736 0.1629 -2.5656 31 1 2.4521 1.0801 -4.7703 32 1 2.3222 -2.5000 -4.6016 33 1 0.7589 -1.9401 -3.9574 34 1 1.9204 -4.7033 -3.4369 35 1 1.6436 -4.7335 -1.6793 36 1 0.3918 -4.0851 -2.7666 37 1 0.3666 -1.9616 -1.4642 38 1 1.6310 -2.5884 -0.3797 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591052103.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:37 Heat of formation + Delta-G solvation = -87.418318 kcal Electronic energy + Delta-G solvation = -16940.026118 eV Core-core repulsion = 14394.666169 eV Total energy + Delta-G solvation = -2545.359949 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.68659 -37.76527 -36.10976 -34.65618 -32.34465 -30.39794 -29.18262 -27.56484 -25.66347 -24.61439 -22.67742 -21.14226 -20.18260 -18.36227 -17.94461 -17.01382 -16.58258 -16.12152 -15.68269 -15.39872 -14.96877 -14.66508 -14.19315 -13.84188 -13.71861 -13.55099 -13.14130 -12.93034 -12.80092 -12.78088 -12.54304 -12.45299 -12.36196 -11.93646 -11.65180 -11.49747 -11.20333 -11.09437 -11.06517 -10.71812 -10.46343 -8.93287 -8.08746 -6.13060 1.41969 1.42836 1.54100 2.48038 2.92791 3.25849 3.42100 3.86184 3.91483 4.05712 4.16500 4.26448 4.36150 4.43005 4.52193 4.56070 4.62168 4.71593 4.81418 4.87439 4.90092 4.98888 5.06004 5.09778 5.18420 5.23239 5.28549 5.36920 5.48785 5.53738 5.70155 5.90451 6.31637 6.41265 6.51416 6.88505 7.00046 7.52317 9.03295 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.024486 B = 0.008251 C = 0.008030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.237061 B = 3392.755868 C = 3486.294150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.095 3.905 3 H 0.066 0.934 4 C 0.036 3.964 5 C -0.496 4.496 6 H 0.057 0.943 7 C -0.004 4.004 8 N -0.940 5.940 9 Si 0.954 3.046 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.267 1.267 13 N -0.527 5.527 14 C 0.028 3.972 15 C 0.112 3.888 16 H 0.055 0.945 17 O -0.576 6.576 18 C -0.098 4.098 19 C -0.084 4.084 20 H 0.063 0.937 21 C -0.138 4.138 22 C 0.065 3.935 23 H 0.050 0.950 24 H 0.058 0.942 25 H 0.063 0.937 26 H -0.010 1.010 27 H 0.000 1.000 28 H 0.258 0.742 29 H 0.075 0.925 30 H 0.037 0.963 31 H 0.393 0.607 32 H 0.076 0.924 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.050 0.950 36 H 0.062 0.938 37 H 0.035 0.965 38 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.403 1.517 -13.608 14.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.013 4.013 3 H 0.084 0.916 4 C -0.002 4.002 5 C -0.534 4.534 6 H 0.075 0.925 7 C -0.200 4.200 8 N -0.582 5.582 9 Si 0.780 3.220 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.192 1.192 13 N -0.251 5.251 14 C -0.100 4.100 15 C 0.053 3.947 16 H 0.073 0.927 17 O -0.384 6.384 18 C -0.136 4.136 19 C -0.104 4.104 20 H 0.081 0.919 21 C -0.195 4.195 22 C -0.063 4.063 23 H 0.069 0.931 24 H 0.077 0.923 25 H 0.082 0.918 26 H 0.008 0.992 27 H 0.018 0.982 28 H 0.067 0.933 29 H 0.094 0.906 30 H 0.055 0.945 31 H 0.243 0.757 32 H 0.095 0.905 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.053 0.947 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.138 0.823 -13.623 14.261 hybrid contribution 0.343 0.541 0.872 1.082 sum -3.795 1.363 -12.751 13.373 Atomic orbital electron populations 1.22385 0.97366 1.01603 1.01916 1.21622 0.91958 0.97198 0.90552 0.91613 1.19063 0.95305 0.94514 0.91279 1.21436 0.92892 1.28488 1.10581 0.92525 1.25819 1.02755 0.95678 0.95758 1.70087 1.36940 1.34088 1.17088 0.85606 0.80840 0.77195 0.78325 1.20245 1.21340 1.19153 1.61869 1.59460 1.02388 1.01411 1.22776 0.98868 0.97655 0.90699 1.21668 0.98135 0.91654 0.83259 0.92690 1.86439 1.83117 1.29819 1.38982 1.21514 1.01395 0.93230 0.97411 1.21072 1.00456 0.95416 0.93409 0.91879 1.21712 1.01035 0.94674 1.02117 1.22097 0.95797 0.89928 0.98443 0.93114 0.92277 0.91832 0.99200 0.98166 0.93327 0.90625 0.94477 0.75708 0.90488 0.91526 0.90918 0.93135 0.91937 0.94727 0.92853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.86 8.45 71.98 0.61 -5.26 16 2 C 0.09 3.85 2.28 44.92 0.10 3.95 16 3 H 0.07 2.67 7.99 -2.39 -0.02 2.65 16 4 C 0.04 1.84 4.34 29.85 0.13 1.97 16 5 C -0.50 -27.99 8.78 25.60 0.22 -27.76 16 6 H 0.06 3.16 7.75 -2.91 -0.02 3.14 16 7 C 0.00 -0.24 5.46 84.65 0.46 0.22 16 8 N -0.94 -57.57 13.29 21.45 0.28 -57.28 16 9 Si 0.95 45.39 29.54 68.60 2.03 47.42 16 10 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 11 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 12 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 13 N -0.53 -19.69 4.27 -870.92 -3.72 -23.41 16 14 C 0.03 0.85 4.75 86.33 0.41 1.26 16 15 C 0.11 3.05 3.63 30.65 0.11 3.16 16 16 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 17 O -0.58 -13.73 13.32 -148.98 -1.98 -15.72 16 18 C -0.10 -2.58 4.94 30.68 0.15 -2.42 16 19 C -0.08 -2.52 2.88 -10.74 -0.03 -2.55 16 20 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 21 C -0.14 -3.39 9.20 71.98 0.66 -2.73 16 22 C 0.07 2.32 3.84 86.31 0.33 2.65 16 23 H 0.05 1.73 6.46 -2.39 -0.02 1.71 16 24 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 25 H 0.06 1.84 6.81 -2.39 -0.02 1.82 16 26 H -0.01 -0.57 8.14 -2.38 -0.02 -0.59 16 27 H 0.00 0.00 6.29 -2.39 -0.02 -0.01 16 28 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 29 H 0.08 2.12 8.02 -2.39 -0.02 2.10 16 30 H 0.04 1.08 6.87 -2.39 -0.02 1.06 16 31 H 0.39 6.12 9.08 -74.06 -0.67 5.45 16 32 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.03 1.15 6.58 -2.39 -0.02 1.13 16 38 H 0.05 2.29 6.16 -2.38 -0.01 2.27 16 Total: -1.00 -64.78 293.87 0.12 -64.66 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: 0.35 Total: 11.85 kcal Atomic # 6 Polarization: -30.68 SS G_CDS: 3.16 Total: -27.52 kcal Atomic # 7 Polarization: -77.26 SS G_CDS: -3.43 Total: -80.69 kcal Atomic # 8 Polarization: -13.73 SS G_CDS: -1.98 Total: -15.72 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -64.78 0.12 -64.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591052103.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.756 kcal (2) G-P(sol) polarization free energy of solvation -64.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds