Wall clock time and date at job start Sun Mar 29 2020 22:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 109.46670 * 2 1 4 4 C 1.52992 * 109.47092 * 239.99669 * 2 1 3 5 5 C 1.50703 * 109.47015 * 175.54994 * 4 2 1 6 6 H 1.08004 * 119.99850 * 5.02430 * 5 4 2 7 7 C 1.37875 * 120.00207 * 185.02133 * 5 4 2 8 8 N 1.31515 * 120.00226 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 120.00017 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47340 * 89.99630 * 9 7 5 11 11 H 1.48505 * 109.47402 * 210.00032 * 9 7 5 12 12 H 1.48503 * 109.47093 * 329.99749 * 9 7 5 13 13 N 1.46900 * 109.46616 * 119.99575 * 2 1 3 14 14 C 1.46846 * 110.99966 * 58.43026 * 13 2 1 15 15 C 1.53042 * 109.52303 * 174.15742 * 14 13 2 16 16 H 1.08997 * 109.53661 * 299.21594 * 15 14 13 17 17 O 1.42902 * 109.50039 * 179.12300 * 15 14 13 18 18 C 1.53110 * 109.27802 * 59.18032 * 15 14 13 19 19 C 1.53117 * 109.16254 * 302.34491 * 18 15 14 20 20 H 1.09000 * 109.50144 * 297.67557 * 19 18 15 21 21 C 1.52995 * 109.50571 * 177.59527 * 19 18 15 22 22 C 1.46849 * 110.99690 * 294.17876 * 13 2 1 23 23 H 1.09005 * 109.46691 * 60.00063 * 1 2 3 24 24 H 1.08994 * 109.47078 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47247 * 300.00270 * 1 2 3 26 26 H 1.09001 * 109.47232 * 295.54984 * 4 2 1 27 27 H 1.08997 * 109.47453 * 55.55094 * 4 2 1 28 28 H 0.96998 * 120.00079 * 180.02562 * 8 7 5 29 29 H 1.09006 * 109.46252 * 54.14322 * 14 13 2 30 30 H 1.09003 * 109.46574 * 294.17735 * 14 13 2 31 31 H 0.96696 * 114.00736 * 60.19873 * 17 15 14 32 32 H 1.09004 * 109.52741 * 182.44185 * 18 15 14 33 33 H 1.08999 * 109.57797 * 62.28046 * 18 15 14 34 34 H 1.08998 * 109.47431 * 60.08135 * 21 19 18 35 35 H 1.09007 * 109.47157 * 180.02562 * 21 19 18 36 36 H 1.08999 * 109.47557 * 300.07907 * 21 19 18 37 37 H 1.08997 * 109.42738 * 65.80790 * 22 13 2 38 38 H 1.08992 * 109.49394 * 305.83431 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5430 -0.6265 -1.3055 6 1 4.0867 -0.1756 -0.4884 7 6 4.2241 -1.1155 -2.4000 8 7 5.5358 -1.0333 -2.4490 9 14 3.2838 -1.8948 -3.8135 10 1 2.9330 -0.8511 -4.8098 11 1 4.1294 -2.9310 -4.4589 12 1 2.0415 -2.5221 -3.2953 13 7 2.0196 -0.6924 1.1995 14 6 1.5183 -2.0716 1.2524 15 6 2.1619 -2.8049 2.4315 16 1 3.2435 -2.8297 2.2989 17 8 1.6583 -4.1407 2.4948 18 6 1.8229 -2.0687 3.7305 19 6 2.3127 -0.6214 3.6305 20 1 3.3968 -0.6112 3.5170 21 6 1.9249 0.1381 4.9007 22 6 1.6655 0.0492 2.4165 23 1 -0.3633 0.5139 -0.8901 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.7433 -1.7694 -1.2101 27 1 1.6131 -0.2557 -2.1374 28 1 6.0149 -1.3769 -3.2192 29 1 1.7697 -2.5853 0.3244 30 1 0.4357 -2.0600 1.3791 31 1 1.8375 -4.6666 1.7034 32 1 2.3151 -2.5626 4.5684 33 1 0.7440 -2.0781 3.8848 34 1 2.3849 -0.3406 5.7651 35 1 2.2734 1.1685 4.8287 36 1 0.8408 0.1276 5.0137 37 1 0.5823 0.0515 2.5374 38 1 2.0239 1.0752 2.3344 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591052104.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:39 Heat of formation + Delta-G solvation = -61.882289 kcal Electronic energy + Delta-G solvation = -16947.637114 eV Core-core repulsion = 14403.384490 eV Total energy + Delta-G solvation = -2544.252624 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.40965 -36.38515 -35.03053 -32.52188 -30.73191 -29.58725 -27.78134 -26.38611 -24.16021 -22.29385 -21.79057 -19.60943 -18.71667 -16.90650 -16.57534 -15.68830 -15.05793 -14.51704 -14.12904 -14.05951 -13.72677 -13.00035 -12.91053 -12.64105 -12.34396 -12.22032 -11.91713 -11.75070 -11.54965 -11.37161 -11.24504 -10.74150 -10.59346 -10.38758 -10.23859 -9.97353 -9.67163 -9.63559 -9.45507 -9.04162 -8.45630 -7.54968 -5.94043 -3.88659 3.32301 3.40725 3.42474 4.19077 4.50893 4.58451 5.05541 5.09184 5.26382 5.35753 5.38899 5.53261 5.63971 5.66893 5.73864 5.78178 5.82506 5.85616 5.93287 6.02092 6.05010 6.20584 6.24243 6.31404 6.39000 6.47509 6.56805 6.61687 6.75107 7.06604 7.32891 7.68655 7.79029 7.92191 7.94865 8.69612 9.20129 9.68938 11.19782 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.028308 B = 0.008185 C = 0.007792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.873212 B = 3419.884867 C = 3592.661733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.097 3.903 3 H 0.077 0.923 4 C -0.007 4.007 5 C -0.494 4.494 6 H 0.081 0.919 7 C 0.062 3.938 8 N -0.906 5.906 9 Si 0.872 3.128 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.270 1.270 13 N -0.506 5.506 14 C 0.027 3.973 15 C 0.105 3.895 16 H 0.067 0.933 17 O -0.575 6.575 18 C -0.103 4.103 19 C -0.089 4.089 20 H 0.082 0.918 21 C -0.142 4.142 22 C 0.057 3.943 23 H 0.056 0.944 24 H 0.051 0.949 25 H 0.045 0.955 26 H 0.015 0.985 27 H 0.015 0.985 28 H 0.260 0.740 29 H 0.087 0.913 30 H 0.030 0.970 31 H 0.378 0.622 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.054 0.946 35 H 0.056 0.944 36 H 0.051 0.949 37 H 0.027 0.973 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.192 -0.493 10.332 13.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.011 4.011 3 H 0.096 0.904 4 C -0.045 4.045 5 C -0.532 4.532 6 H 0.099 0.901 7 C -0.138 4.138 8 N -0.546 5.546 9 Si 0.700 3.300 10 H -0.205 1.205 11 H -0.216 1.216 12 H -0.195 1.195 13 N -0.231 5.231 14 C -0.101 4.101 15 C 0.046 3.954 16 H 0.086 0.914 17 O -0.380 6.380 18 C -0.141 4.141 19 C -0.108 4.108 20 H 0.101 0.899 21 C -0.200 4.200 22 C -0.071 4.071 23 H 0.075 0.925 24 H 0.070 0.930 25 H 0.064 0.936 26 H 0.033 0.967 27 H 0.033 0.967 28 H 0.070 0.930 29 H 0.105 0.895 30 H 0.048 0.952 31 H 0.226 0.774 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.045 0.955 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.723 -0.363 10.780 13.872 hybrid contribution -1.114 -0.578 -1.474 1.936 sum -9.838 -0.941 9.306 13.575 Atomic orbital electron populations 1.22567 0.99729 1.01342 1.01045 1.21689 0.89874 0.98604 0.90949 0.90434 1.19708 0.98047 0.95133 0.91586 1.21081 0.89297 1.38108 1.04699 0.90087 1.25026 0.94677 0.96023 0.98063 1.69910 1.06563 1.47792 1.30382 0.86913 0.80203 0.79547 0.83309 1.20538 1.21587 1.19451 1.61889 1.59183 1.00786 1.01200 1.22760 0.96570 0.91278 0.99528 1.21825 0.97783 0.81131 0.94691 0.91450 1.86411 1.82590 1.24490 1.44515 1.21546 1.01208 0.94729 0.96588 1.21116 1.01633 0.93700 0.94304 0.89915 1.21754 1.01094 1.00167 0.96964 1.22164 0.97020 0.97845 0.90091 0.92491 0.92994 0.93630 0.96727 0.96718 0.93032 0.89495 0.95179 0.77438 0.91733 0.92067 0.92665 0.92444 0.93016 0.95538 0.90950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.06 8.50 37.16 0.32 -2.74 16 2 C 0.10 1.89 2.30 -67.71 -0.16 1.73 16 3 H 0.08 1.56 8.07 -51.93 -0.42 1.14 16 4 C -0.01 -0.17 3.34 -27.89 -0.09 -0.26 16 5 C -0.49 -13.78 9.38 -34.44 -0.32 -14.10 16 6 H 0.08 2.48 7.97 -52.48 -0.42 2.07 16 7 C 0.06 1.79 5.47 -17.82 -0.10 1.69 16 8 N -0.91 -27.98 13.96 55.43 0.77 -27.20 16 9 Si 0.87 21.63 27.37 -169.99 -4.65 16.98 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.27 -6.41 6.69 56.52 0.38 -6.04 16 13 N -0.51 -9.39 4.32 -226.68 -0.98 -10.37 16 14 C 0.03 0.47 4.26 -3.83 -0.02 0.45 16 15 C 0.10 1.67 3.63 -26.65 -0.10 1.57 16 16 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 17 O -0.57 -8.64 13.32 -35.23 -0.47 -9.11 16 18 C -0.10 -1.46 4.94 -26.61 -0.13 -1.59 16 19 C -0.09 -1.22 2.88 -90.54 -0.26 -1.48 16 20 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 21 C -0.14 -1.55 9.20 37.16 0.34 -1.21 16 22 C 0.06 0.88 4.33 -3.83 -0.02 0.86 16 23 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 24 H 0.05 0.84 6.51 -51.93 -0.34 0.50 16 25 H 0.04 0.67 6.67 -51.93 -0.35 0.32 16 26 H 0.01 0.34 5.51 -51.93 -0.29 0.06 16 27 H 0.01 0.34 7.29 -51.93 -0.38 -0.04 16 28 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 29 H 0.09 1.67 5.97 -51.93 -0.31 1.36 16 30 H 0.03 0.51 6.61 -51.93 -0.34 0.17 16 31 H 0.38 4.44 9.08 45.56 0.41 4.86 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.03 0.39 6.75 -51.93 -0.35 0.04 16 38 H 0.07 1.10 8.07 -51.93 -0.42 0.68 16 LS Contribution 290.04 15.07 4.37 4.37 Total: -1.00 -30.76 290.04 -7.23 -37.99 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -5.74 Total: 2.41 kcal Atomic # 6 Polarization: -14.53 SS G_CDS: -0.53 Total: -15.06 kcal Atomic # 7 Polarization: -37.36 SS G_CDS: -0.21 Total: -37.57 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: -0.47 Total: -9.11 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.65 Total: 16.98 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.76 -7.23 -37.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591052104.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.895 kcal (2) G-P(sol) polarization free energy of solvation -30.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds