Wall clock time and date at job start Sun Mar 29 2020 22:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 109.46670 * 2 1 4 4 C 1.52992 * 109.47092 * 239.99669 * 2 1 3 5 5 C 1.50703 * 109.47015 * 175.54994 * 4 2 1 6 6 H 1.08004 * 119.99850 * 5.02430 * 5 4 2 7 7 C 1.37875 * 120.00207 * 185.02133 * 5 4 2 8 8 N 1.31515 * 120.00226 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 120.00017 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47340 * 89.99630 * 9 7 5 11 11 H 1.48505 * 109.47402 * 210.00032 * 9 7 5 12 12 H 1.48503 * 109.47093 * 329.99749 * 9 7 5 13 13 N 1.46900 * 109.46616 * 119.99575 * 2 1 3 14 14 C 1.46846 * 110.99966 * 58.43026 * 13 2 1 15 15 C 1.53042 * 109.52303 * 174.15742 * 14 13 2 16 16 H 1.08997 * 109.53661 * 299.21594 * 15 14 13 17 17 O 1.42902 * 109.50039 * 179.12300 * 15 14 13 18 18 C 1.53110 * 109.27802 * 59.18032 * 15 14 13 19 19 C 1.53117 * 109.16254 * 302.34491 * 18 15 14 20 20 H 1.09000 * 109.50144 * 297.67557 * 19 18 15 21 21 C 1.52995 * 109.50571 * 177.59527 * 19 18 15 22 22 C 1.46849 * 110.99690 * 294.17876 * 13 2 1 23 23 H 1.09005 * 109.46691 * 60.00063 * 1 2 3 24 24 H 1.08994 * 109.47078 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47247 * 300.00270 * 1 2 3 26 26 H 1.09001 * 109.47232 * 295.54984 * 4 2 1 27 27 H 1.08997 * 109.47453 * 55.55094 * 4 2 1 28 28 H 0.96998 * 120.00079 * 180.02562 * 8 7 5 29 29 H 1.09006 * 109.46252 * 54.14322 * 14 13 2 30 30 H 1.09003 * 109.46574 * 294.17735 * 14 13 2 31 31 H 0.96696 * 114.00736 * 60.19873 * 17 15 14 32 32 H 1.09004 * 109.52741 * 182.44185 * 18 15 14 33 33 H 1.08999 * 109.57797 * 62.28046 * 18 15 14 34 34 H 1.08998 * 109.47431 * 60.08135 * 21 19 18 35 35 H 1.09007 * 109.47157 * 180.02562 * 21 19 18 36 36 H 1.08999 * 109.47557 * 300.07907 * 21 19 18 37 37 H 1.08997 * 109.42738 * 65.80790 * 22 13 2 38 38 H 1.08992 * 109.49394 * 305.83431 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5430 -0.6265 -1.3055 6 1 4.0867 -0.1756 -0.4884 7 6 4.2241 -1.1155 -2.4000 8 7 5.5358 -1.0333 -2.4490 9 14 3.2838 -1.8948 -3.8135 10 1 2.9330 -0.8511 -4.8098 11 1 4.1294 -2.9310 -4.4589 12 1 2.0415 -2.5221 -3.2953 13 7 2.0196 -0.6924 1.1995 14 6 1.5183 -2.0716 1.2524 15 6 2.1619 -2.8049 2.4315 16 1 3.2435 -2.8297 2.2989 17 8 1.6583 -4.1407 2.4948 18 6 1.8229 -2.0687 3.7305 19 6 2.3127 -0.6214 3.6305 20 1 3.3968 -0.6112 3.5170 21 6 1.9249 0.1381 4.9007 22 6 1.6655 0.0492 2.4165 23 1 -0.3633 0.5139 -0.8901 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.7433 -1.7694 -1.2101 27 1 1.6131 -0.2557 -2.1374 28 1 6.0149 -1.3769 -3.2192 29 1 1.7697 -2.5853 0.3244 30 1 0.4357 -2.0600 1.3791 31 1 1.8375 -4.6666 1.7034 32 1 2.3151 -2.5626 4.5684 33 1 0.7440 -2.0781 3.8848 34 1 2.3849 -0.3406 5.7651 35 1 2.2734 1.1685 4.8287 36 1 0.8408 0.1276 5.0137 37 1 0.5823 0.0515 2.5374 38 1 2.0239 1.0752 2.3344 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591052104.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:38 Heat of formation + Delta-G solvation = -84.662749 kcal Electronic energy + Delta-G solvation = -16948.624949 eV Core-core repulsion = 14403.384490 eV Total energy + Delta-G solvation = -2545.240459 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.72860 -37.72543 -36.30877 -34.57985 -32.18104 -31.01047 -29.43342 -27.50715 -25.62091 -24.10293 -23.02315 -20.90909 -20.18432 -18.77543 -18.12188 -17.06995 -16.54541 -16.05831 -15.55156 -15.42593 -15.04113 -14.68735 -14.29002 -14.00811 -13.92138 -13.68222 -13.37839 -12.92822 -12.80916 -12.74808 -12.51205 -12.41413 -12.13773 -11.69955 -11.57831 -11.51465 -11.37015 -11.31947 -11.01715 -10.78046 -10.67670 -8.92902 -8.17932 -6.17245 1.36344 1.37705 1.48529 2.40928 2.91593 3.17350 3.39444 3.87099 3.89340 4.04556 4.13352 4.23742 4.35178 4.39906 4.49738 4.57944 4.63009 4.70963 4.80559 4.84595 4.89790 4.97862 5.04137 5.06238 5.12028 5.15839 5.21899 5.29603 5.36742 5.50395 5.57190 5.74319 6.32677 6.38416 6.54017 6.80896 6.92261 7.43781 8.99331 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.028308 B = 0.008185 C = 0.007792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.873212 B = 3419.884867 C = 3592.661733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.098 3.902 3 H 0.064 0.936 4 C -0.005 4.005 5 C -0.491 4.491 6 H 0.037 0.963 7 C -0.002 4.002 8 N -0.957 5.957 9 Si 0.943 3.057 10 H -0.270 1.270 11 H -0.290 1.290 12 H -0.250 1.250 13 N -0.534 5.534 14 C 0.034 3.966 15 C 0.108 3.892 16 H 0.044 0.956 17 O -0.578 6.578 18 C -0.097 4.097 19 C -0.086 4.086 20 H 0.062 0.938 21 C -0.135 4.135 22 C 0.058 3.942 23 H 0.065 0.935 24 H 0.054 0.946 25 H 0.065 0.935 26 H 0.018 0.982 27 H 0.020 0.980 28 H 0.261 0.739 29 H 0.063 0.937 30 H 0.041 0.959 31 H 0.391 0.609 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.042 0.958 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.688 -0.777 10.903 16.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.010 4.010 3 H 0.082 0.918 4 C -0.042 4.042 5 C -0.530 4.530 6 H 0.056 0.944 7 C -0.197 4.197 8 N -0.599 5.599 9 Si 0.767 3.233 10 H -0.195 1.195 11 H -0.216 1.216 12 H -0.174 1.174 13 N -0.259 5.259 14 C -0.094 4.094 15 C 0.049 3.951 16 H 0.062 0.938 17 O -0.384 6.384 18 C -0.135 4.135 19 C -0.105 4.105 20 H 0.080 0.920 21 C -0.193 4.193 22 C -0.069 4.069 23 H 0.084 0.916 24 H 0.073 0.927 25 H 0.084 0.916 26 H 0.036 0.964 27 H 0.038 0.962 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.060 0.940 31 H 0.240 0.760 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.060 0.940 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -11.242 -0.647 11.363 15.998 hybrid contribution -0.262 -0.470 -1.595 1.683 sum -11.504 -1.117 9.769 15.133 Atomic orbital electron populations 1.22416 0.96592 1.01940 1.02541 1.21504 0.92293 0.97289 0.89925 0.91756 1.19651 0.94728 0.95882 0.93935 1.21297 0.91826 1.36736 1.03116 0.94443 1.25940 0.95511 0.96927 1.01315 1.70081 1.08616 1.49684 1.31558 0.85776 0.79268 0.78694 0.79531 1.19542 1.21575 1.17363 1.61801 1.60391 1.01608 1.02111 1.22663 0.97166 0.90635 0.98953 1.21738 0.96309 0.81724 0.95365 0.93834 1.86390 1.82388 1.24108 1.45555 1.21528 1.01759 0.94561 0.95653 1.21101 1.00266 0.93968 0.95134 0.91951 1.21701 1.01941 1.00066 0.95543 1.22223 0.98012 0.97476 0.89218 0.91569 0.92743 0.91620 0.96404 0.96201 0.93046 0.91905 0.94049 0.75973 0.90783 0.91200 0.91491 0.91904 0.91841 0.93999 0.91182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.24 8.50 71.98 0.61 -4.63 16 2 C 0.10 3.75 2.30 44.92 0.10 3.85 16 3 H 0.06 2.59 8.07 -2.39 -0.02 2.57 16 4 C 0.00 -0.21 3.34 29.85 0.10 -0.11 16 5 C -0.49 -28.14 9.38 25.60 0.24 -27.90 16 6 H 0.04 2.41 7.97 -2.91 -0.02 2.39 16 7 C 0.00 -0.11 5.47 84.65 0.46 0.35 16 8 N -0.96 -60.93 13.96 21.45 0.30 -60.63 16 9 Si 0.94 44.64 27.37 68.60 1.88 46.52 16 10 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 11 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 12 H -0.25 -10.94 6.69 99.48 0.67 -10.27 16 13 N -0.53 -19.64 4.32 -871.09 -3.76 -23.40 16 14 C 0.03 1.16 4.26 86.33 0.37 1.53 16 15 C 0.11 3.37 3.63 30.65 0.11 3.48 16 16 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 17 O -0.58 -16.57 13.32 -148.98 -1.98 -18.56 16 18 C -0.10 -2.57 4.94 30.67 0.15 -2.42 16 19 C -0.09 -2.23 2.88 -10.74 -0.03 -2.26 16 20 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 21 C -0.13 -2.59 9.20 71.98 0.66 -1.92 16 22 C 0.06 1.71 4.33 86.33 0.37 2.08 16 23 H 0.07 1.84 8.14 -2.38 -0.02 1.83 16 24 H 0.05 1.60 6.51 -2.39 -0.02 1.58 16 25 H 0.06 1.70 6.67 -2.39 -0.02 1.68 16 26 H 0.02 0.82 5.51 -2.39 -0.01 0.80 16 27 H 0.02 0.89 7.29 -2.39 -0.02 0.87 16 28 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 29 H 0.06 2.40 5.97 -2.38 -0.01 2.39 16 30 H 0.04 1.31 6.61 -2.39 -0.02 1.29 16 31 H 0.39 8.78 9.08 -74.06 -0.67 8.11 16 32 H 0.07 1.82 8.14 -2.38 -0.02 1.80 16 33 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 36 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.04 1.11 6.75 -2.39 -0.02 1.09 16 38 H 0.07 2.06 8.07 -2.39 -0.02 2.04 16 Total: -1.00 -67.02 290.04 -0.11 -67.12 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: 0.31 Total: 16.89 kcal Atomic # 6 Polarization: -31.09 SS G_CDS: 3.15 Total: -27.94 kcal Atomic # 7 Polarization: -80.57 SS G_CDS: -3.46 Total: -84.03 kcal Atomic # 8 Polarization: -16.57 SS G_CDS: -1.98 Total: -18.56 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 1.88 Total: 46.52 kcal Total: -67.02 -0.11 -67.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591052104.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.539 kcal (2) G-P(sol) polarization free energy of solvation -67.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds