Wall clock time and date at job start Sun Mar 29 2020 22:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.45485 * 2 1 4 4 C 1.53031 * 109.45777 * 240.02788 * 2 1 3 5 5 H 1.09000 * 109.50866 * 300.74674 * 4 2 1 6 6 C 1.53002 * 109.50719 * 60.86976 * 4 2 1 7 7 O 1.42901 * 109.47510 * 184.99971 * 6 4 2 8 8 C 1.53129 * 109.27641 * 180.80397 * 4 2 1 9 9 C 1.53116 * 109.15636 * 57.65724 * 8 4 2 10 10 C 1.53042 * 109.27667 * 302.34190 * 9 8 4 11 11 N 1.46845 * 109.46105 * 119.97480 * 2 1 3 12 12 C 1.46900 * 111.00089 * 305.85704 * 11 2 1 13 13 C 1.53002 * 109.46916 * 165.41584 * 12 11 2 14 14 C 1.50702 * 109.46928 * 179.97438 * 13 12 11 15 15 H 1.08001 * 119.99883 * 0.02562 * 14 13 12 16 16 C 1.37873 * 119.99886 * 179.97438 * 14 13 12 17 17 N 1.31521 * 119.99939 * 180.02562 * 16 14 13 18 18 Si 1.86794 * 120.00167 * 0.02562 * 16 14 13 19 19 H 1.48494 * 109.47311 * 270.00018 * 18 16 14 20 20 H 1.48503 * 109.47178 * 30.00435 * 18 16 14 21 21 H 1.48503 * 109.47431 * 150.00042 * 18 16 14 22 22 H 1.09001 * 109.47326 * 306.54449 * 1 2 3 23 23 H 1.09002 * 109.47207 * 66.54168 * 1 2 3 24 24 H 1.08997 * 109.47426 * 186.53944 * 1 2 3 25 25 H 1.09000 * 109.46738 * 304.99441 * 6 4 2 26 26 H 1.09001 * 109.47593 * 64.99156 * 6 4 2 27 27 H 0.96694 * 114.00227 * 179.97438 * 7 6 4 28 28 H 1.09002 * 109.52359 * 177.55776 * 8 4 2 29 29 H 1.09002 * 109.52254 * 297.75277 * 8 4 2 30 30 H 1.08992 * 109.50705 * 62.28510 * 9 8 4 31 31 H 1.09003 * 109.50302 * 182.41036 * 9 8 4 32 32 H 1.08994 * 109.46801 * 299.16727 * 10 9 8 33 33 H 1.09004 * 109.46150 * 179.19749 * 10 9 8 34 34 H 1.08997 * 109.47319 * 45.41555 * 12 11 2 35 35 H 1.08996 * 109.46647 * 285.41176 * 12 11 2 36 36 H 1.09005 * 109.46993 * 60.00148 * 13 12 11 37 37 H 1.09001 * 109.47153 * 299.99768 * 13 12 11 38 38 H 0.96992 * 120.00270 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0398 -0.7208 -1.2499 5 1 1.6658 -1.7446 -1.2577 6 6 1.5480 0.0130 -2.4992 7 8 1.9253 -0.7239 -3.6640 8 6 3.5709 -0.7360 -1.2357 9 6 4.0547 -1.4189 0.0466 10 6 3.4864 -0.6777 1.2590 11 7 2.0193 -0.6917 1.1994 12 6 1.4372 -0.1106 2.4165 13 6 1.6681 -1.0587 3.5950 14 6 1.0716 -0.4622 4.8438 15 1 0.5769 0.4969 4.8011 16 6 1.1565 -1.1414 6.0407 17 7 0.6354 -0.6211 7.1304 18 14 2.0115 -2.8005 6.1145 19 1 1.0232 -3.8786 5.8579 20 1 3.0800 -2.8530 5.0844 21 1 2.6114 -2.9889 7.4598 22 1 -0.3634 0.6119 0.8256 23 1 -0.3634 0.4091 -0.9427 24 1 -0.3634 -1.0209 0.1170 25 1 0.4625 0.1045 -2.4630 26 1 1.9953 1.0063 -2.5369 27 1 1.6452 -0.3164 -4.4950 28 1 3.9379 -1.2863 -2.1021 29 1 3.9457 0.2871 -1.2672 30 1 3.7124 -2.4536 0.0593 31 1 5.1439 -1.3947 0.0831 32 1 3.8403 0.3532 1.2532 33 1 3.8174 -1.1699 2.1735 34 1 0.3668 0.0365 2.2730 35 1 1.9114 0.8487 2.6236 36 1 2.7386 -1.2058 3.7386 37 1 1.1941 -2.0180 3.3879 38 1 0.6955 -1.0987 7.9725 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591056120.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:21 Heat of formation + Delta-G solvation = -63.685149 kcal Electronic energy + Delta-G solvation = -16520.348479 eV Core-core repulsion = 13976.017677 eV Total energy + Delta-G solvation = -2544.330802 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.47691 -36.82673 -34.19426 -32.78421 -32.42665 -29.81103 -27.39487 -25.65637 -24.75690 -21.99630 -21.11474 -19.77177 -19.51146 -17.49704 -16.81060 -15.34619 -15.15798 -14.95814 -14.32503 -14.24578 -13.71592 -13.59020 -13.09447 -12.70747 -12.53900 -12.25818 -11.97720 -11.83765 -11.51645 -11.34785 -10.92903 -10.78212 -10.64071 -10.37259 -10.20629 -9.97587 -9.87108 -9.59334 -9.56080 -9.14589 -8.49874 -7.78259 -6.02035 -3.99841 3.35078 3.41796 3.47329 3.96360 4.46861 4.48935 4.76321 4.90671 5.04245 5.24046 5.32694 5.36084 5.40244 5.49220 5.54628 5.59939 5.78128 5.82721 5.93907 6.07058 6.09051 6.13214 6.21407 6.30946 6.38293 6.41820 6.45027 6.59224 6.84987 7.22462 7.37356 7.47885 7.66384 7.71296 7.89544 8.55895 9.02132 9.60946 11.11419 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.043872 B = 0.006161 C = 0.005711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.073401 B = 4543.415517 C = 4902.043496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.089 3.911 3 H 0.034 0.966 4 C -0.079 4.079 5 H 0.085 0.915 6 C 0.078 3.922 7 O -0.573 6.573 8 C -0.109 4.109 9 C -0.117 4.117 10 C 0.054 3.946 11 N -0.536 5.536 12 C 0.066 3.934 13 C -0.006 4.006 14 C -0.520 4.520 15 H 0.070 0.930 16 C 0.067 3.933 17 N -0.905 5.905 18 Si 0.881 3.119 19 H -0.277 1.277 20 H -0.265 1.265 21 H -0.289 1.289 22 H 0.063 0.937 23 H 0.055 0.945 24 H 0.067 0.933 25 H 0.051 0.949 26 H 0.042 0.958 27 H 0.375 0.625 28 H 0.066 0.934 29 H 0.053 0.947 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.027 0.973 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.025 0.975 36 H 0.014 0.986 37 H 0.020 0.980 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.587 1.064 -19.123 19.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.019 4.019 3 H 0.052 0.948 4 C -0.098 4.098 5 H 0.103 0.897 6 C 0.000 4.000 7 O -0.377 6.377 8 C -0.147 4.147 9 C -0.155 4.155 10 C -0.074 4.074 11 N -0.261 5.261 12 C -0.061 4.061 13 C -0.043 4.043 14 C -0.559 4.559 15 H 0.088 0.912 16 C -0.133 4.133 17 N -0.544 5.544 18 Si 0.709 3.291 19 H -0.203 1.203 20 H -0.190 1.190 21 H -0.215 1.215 22 H 0.082 0.918 23 H 0.074 0.926 24 H 0.086 0.914 25 H 0.069 0.931 26 H 0.060 0.940 27 H 0.221 0.779 28 H 0.085 0.915 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.045 0.955 33 H 0.100 0.900 34 H 0.092 0.908 35 H 0.043 0.957 36 H 0.033 0.967 37 H 0.038 0.962 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.667 0.154 -18.492 18.852 hybrid contribution 0.401 0.460 -0.082 0.616 sum 4.068 0.614 -18.574 19.024 Atomic orbital electron populations 1.22045 0.94553 1.03167 1.01296 1.21434 0.95295 0.94893 0.90320 0.94799 1.21161 0.96047 1.00906 0.91677 0.89662 1.22347 0.98286 0.93907 0.85445 1.86484 1.82257 1.52784 1.16207 1.21547 0.94784 1.00344 0.97990 1.21611 0.99343 1.00439 0.94138 1.22110 0.88035 0.98420 0.98883 1.62006 1.06635 1.55198 1.02222 1.22230 0.99047 0.96414 0.88384 1.19551 0.96672 0.95457 0.92669 1.21097 1.36645 1.06690 0.91445 0.91203 1.24989 0.95040 0.97764 0.95557 1.69917 1.45881 1.38987 0.99651 0.86750 0.80581 0.84642 0.77148 1.20251 1.18960 1.21547 0.91817 0.92609 0.91416 0.93105 0.94016 0.77874 0.91529 0.92830 0.91195 0.91952 0.95525 0.90041 0.90825 0.95717 0.96735 0.96200 0.92771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 8.43 37.16 0.31 -1.76 16 2 C 0.09 1.30 1.96 -67.73 -0.13 1.17 16 3 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 4 C -0.08 -1.03 2.11 -90.54 -0.19 -1.22 16 5 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 6 C 0.08 0.82 6.24 37.16 0.23 1.05 16 7 O -0.57 -5.97 13.25 -35.23 -0.47 -6.43 16 8 C -0.11 -1.39 5.16 -26.60 -0.14 -1.52 16 9 C -0.12 -1.61 6.09 -26.65 -0.16 -1.77 16 10 C 0.05 0.88 5.30 -3.83 -0.02 0.86 16 11 N -0.54 -9.44 4.46 -226.69 -1.01 -10.45 16 12 C 0.07 1.35 4.69 -3.82 -0.02 1.33 16 13 C -0.01 -0.14 4.06 -27.88 -0.11 -0.25 16 14 C -0.52 -15.02 9.66 -34.44 -0.33 -15.36 16 15 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 16 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 17 N -0.91 -28.21 13.96 55.43 0.77 -27.44 16 18 Si 0.88 22.22 27.47 -169.99 -4.67 17.55 16 19 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.27 -6.46 6.54 56.52 0.37 -6.09 16 21 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 22 H 0.06 0.91 6.41 -51.93 -0.33 0.58 16 23 H 0.06 0.61 6.03 -51.93 -0.31 0.29 16 24 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 25 H 0.05 0.49 6.07 -51.93 -0.32 0.17 16 26 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.38 2.10 9.12 45.56 0.42 2.51 16 28 H 0.07 0.83 7.90 -51.93 -0.41 0.42 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.08 1.46 6.42 -51.93 -0.33 1.13 16 34 H 0.07 1.49 5.59 -51.93 -0.29 1.20 16 35 H 0.02 0.52 8.07 -51.93 -0.42 0.10 16 36 H 0.01 0.36 5.65 -51.93 -0.29 0.06 16 37 H 0.02 0.49 7.57 -51.93 -0.39 0.10 16 38 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 289.35 15.07 4.36 4.36 Total: -1.00 -31.83 289.35 -7.33 -39.16 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: -5.65 Total: -1.17 kcal Atomic # 6 Polarization: -14.91 SS G_CDS: -0.66 Total: -15.57 kcal Atomic # 7 Polarization: -37.66 SS G_CDS: -0.24 Total: -37.89 kcal Atomic # 8 Polarization: -5.97 SS G_CDS: -0.47 Total: -6.43 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.67 Total: 17.55 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -31.83 -7.33 -39.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591056120.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.530 kcal (2) G-P(sol) polarization free energy of solvation -31.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds