Wall clock time and date at job start Sun Mar 29 2020 22:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.45485 * 2 1 4 4 C 1.53031 * 109.45777 * 240.02788 * 2 1 3 5 5 H 1.09000 * 109.50866 * 300.74674 * 4 2 1 6 6 C 1.53002 * 109.50719 * 60.86976 * 4 2 1 7 7 O 1.42901 * 109.47510 * 184.99971 * 6 4 2 8 8 C 1.53129 * 109.27641 * 180.80397 * 4 2 1 9 9 C 1.53116 * 109.15636 * 57.65724 * 8 4 2 10 10 C 1.53042 * 109.27667 * 302.34190 * 9 8 4 11 11 N 1.46845 * 109.46105 * 119.97480 * 2 1 3 12 12 C 1.46900 * 111.00089 * 305.85704 * 11 2 1 13 13 C 1.53002 * 109.46916 * 165.41584 * 12 11 2 14 14 C 1.50702 * 109.46928 * 179.97438 * 13 12 11 15 15 H 1.08001 * 119.99883 * 0.02562 * 14 13 12 16 16 C 1.37873 * 119.99886 * 179.97438 * 14 13 12 17 17 N 1.31521 * 119.99939 * 180.02562 * 16 14 13 18 18 Si 1.86794 * 120.00167 * 0.02562 * 16 14 13 19 19 H 1.48494 * 109.47311 * 270.00018 * 18 16 14 20 20 H 1.48503 * 109.47178 * 30.00435 * 18 16 14 21 21 H 1.48503 * 109.47431 * 150.00042 * 18 16 14 22 22 H 1.09001 * 109.47326 * 306.54449 * 1 2 3 23 23 H 1.09002 * 109.47207 * 66.54168 * 1 2 3 24 24 H 1.08997 * 109.47426 * 186.53944 * 1 2 3 25 25 H 1.09000 * 109.46738 * 304.99441 * 6 4 2 26 26 H 1.09001 * 109.47593 * 64.99156 * 6 4 2 27 27 H 0.96694 * 114.00227 * 179.97438 * 7 6 4 28 28 H 1.09002 * 109.52359 * 177.55776 * 8 4 2 29 29 H 1.09002 * 109.52254 * 297.75277 * 8 4 2 30 30 H 1.08992 * 109.50705 * 62.28510 * 9 8 4 31 31 H 1.09003 * 109.50302 * 182.41036 * 9 8 4 32 32 H 1.08994 * 109.46801 * 299.16727 * 10 9 8 33 33 H 1.09004 * 109.46150 * 179.19749 * 10 9 8 34 34 H 1.08997 * 109.47319 * 45.41555 * 12 11 2 35 35 H 1.08996 * 109.46647 * 285.41176 * 12 11 2 36 36 H 1.09005 * 109.46993 * 60.00148 * 13 12 11 37 37 H 1.09001 * 109.47153 * 299.99768 * 13 12 11 38 38 H 0.96992 * 120.00270 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0398 -0.7208 -1.2499 5 1 1.6658 -1.7446 -1.2577 6 6 1.5480 0.0130 -2.4992 7 8 1.9253 -0.7239 -3.6640 8 6 3.5709 -0.7360 -1.2357 9 6 4.0547 -1.4189 0.0466 10 6 3.4864 -0.6777 1.2590 11 7 2.0193 -0.6917 1.1994 12 6 1.4372 -0.1106 2.4165 13 6 1.6681 -1.0587 3.5950 14 6 1.0716 -0.4622 4.8438 15 1 0.5769 0.4969 4.8011 16 6 1.1565 -1.1414 6.0407 17 7 0.6354 -0.6211 7.1304 18 14 2.0115 -2.8005 6.1145 19 1 1.0232 -3.8786 5.8579 20 1 3.0800 -2.8530 5.0844 21 1 2.6114 -2.9889 7.4598 22 1 -0.3634 0.6119 0.8256 23 1 -0.3634 0.4091 -0.9427 24 1 -0.3634 -1.0209 0.1170 25 1 0.4625 0.1045 -2.4630 26 1 1.9953 1.0063 -2.5369 27 1 1.6452 -0.3164 -4.4950 28 1 3.9379 -1.2863 -2.1021 29 1 3.9457 0.2871 -1.2672 30 1 3.7124 -2.4536 0.0593 31 1 5.1439 -1.3947 0.0831 32 1 3.8403 0.3532 1.2532 33 1 3.8174 -1.1699 2.1735 34 1 0.3668 0.0365 2.2730 35 1 1.9114 0.8487 2.6236 36 1 2.7386 -1.2058 3.7386 37 1 1.1941 -2.0180 3.3879 38 1 0.6955 -1.0987 7.9725 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591056120.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:20 Heat of formation + Delta-G solvation = -87.444263 kcal Electronic energy + Delta-G solvation = -16521.378752 eV Core-core repulsion = 13976.017677 eV Total energy + Delta-G solvation = -2545.361074 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.65846 -37.75548 -35.77893 -34.40066 -33.82192 -31.61408 -28.54915 -26.93902 -26.29155 -23.53531 -22.24628 -21.41012 -20.64007 -19.00325 -18.27527 -16.71892 -16.29528 -16.25267 -16.05619 -15.35801 -15.12329 -14.96985 -14.56015 -14.29514 -14.04650 -13.46104 -13.25432 -13.07891 -12.88989 -12.81918 -12.56545 -12.05838 -11.95047 -11.83909 -11.63306 -11.60387 -11.42296 -11.07437 -10.98941 -10.75326 -10.67784 -9.19262 -8.30683 -6.34455 1.35938 1.36496 1.49644 2.35725 2.86129 3.05053 3.47409 3.77529 3.84484 4.02114 4.18012 4.30392 4.34377 4.44614 4.49125 4.52200 4.52828 4.61535 4.74935 4.82607 4.90895 4.97990 4.99777 5.02454 5.10045 5.20135 5.26025 5.35286 5.39264 5.48109 5.51767 5.63268 6.17035 6.29231 6.34638 6.73041 6.97188 7.30471 8.86052 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.043872 B = 0.006161 C = 0.005711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.073401 B = 4543.415517 C = 4902.043496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.088 3.912 3 H 0.038 0.962 4 C -0.077 4.077 5 H 0.068 0.932 6 C 0.084 3.916 7 O -0.589 6.589 8 C -0.104 4.104 9 C -0.111 4.111 10 C 0.050 3.950 11 N -0.544 5.544 12 C 0.078 3.922 13 C 0.002 3.998 14 C -0.532 4.532 15 H 0.033 0.967 16 C 0.009 3.991 17 N -0.950 5.950 18 Si 0.950 3.050 19 H -0.267 1.267 20 H -0.251 1.251 21 H -0.282 1.282 22 H 0.049 0.951 23 H 0.086 0.914 24 H 0.056 0.944 25 H 0.062 0.938 26 H 0.054 0.946 27 H 0.397 0.603 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.081 0.919 32 H 0.029 0.971 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.015 0.985 36 H 0.015 0.985 37 H 0.017 0.983 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.523 0.304 -21.322 21.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 H 0.056 0.944 4 C -0.096 4.096 5 H 0.087 0.913 6 C 0.006 3.994 7 O -0.397 6.397 8 C -0.142 4.142 9 C -0.149 4.149 10 C -0.078 4.078 11 N -0.269 5.269 12 C -0.049 4.049 13 C -0.036 4.036 14 C -0.570 4.570 15 H 0.051 0.949 16 C -0.188 4.188 17 N -0.591 5.591 18 Si 0.774 3.226 19 H -0.192 1.192 20 H -0.175 1.175 21 H -0.208 1.208 22 H 0.068 0.932 23 H 0.105 0.895 24 H 0.075 0.925 25 H 0.080 0.920 26 H 0.073 0.927 27 H 0.246 0.754 28 H 0.091 0.909 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.100 0.900 32 H 0.047 0.953 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.033 0.967 36 H 0.034 0.966 37 H 0.036 0.964 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.601 -0.593 -20.733 21.246 hybrid contribution 0.071 0.775 0.573 0.966 sum 4.672 0.182 -20.161 20.696 Atomic orbital electron populations 1.22035 0.93894 1.02440 1.02445 1.21537 0.95887 0.94965 0.89618 0.94442 1.21101 0.96276 1.00062 0.92127 0.91311 1.22222 0.98895 0.93805 0.84491 1.86421 1.82571 1.53485 1.17234 1.21519 0.94525 1.00732 0.97422 1.21578 1.00387 0.99578 0.93369 1.22160 0.87336 0.98790 0.99464 1.61954 1.07453 1.55504 1.01997 1.21912 0.99256 0.94977 0.88782 1.19414 0.96043 0.95781 0.92344 1.21412 1.36427 1.05570 0.93606 0.94855 1.25930 0.95800 1.02061 0.95018 1.70057 1.47522 1.41012 1.00478 0.85655 0.79832 0.79381 0.77750 1.19236 1.17457 1.20767 0.93183 0.89534 0.92480 0.92025 0.92747 0.75370 0.90879 0.92020 0.91979 0.90037 0.95258 0.91976 0.90936 0.96716 0.96626 0.96436 0.92425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.87 8.43 71.98 0.61 -3.26 16 2 C 0.09 2.43 1.96 44.94 0.09 2.51 16 3 H 0.04 1.02 8.14 -2.39 -0.02 1.01 16 4 C -0.08 -1.82 2.11 -10.74 -0.02 -1.84 16 5 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 6 C 0.08 1.49 6.24 71.98 0.45 1.94 16 7 O -0.59 -10.37 13.25 -148.98 -1.97 -12.34 16 8 C -0.10 -2.38 5.16 30.68 0.16 -2.22 16 9 C -0.11 -2.83 6.09 30.65 0.19 -2.64 16 10 C 0.05 1.60 5.30 86.33 0.46 2.05 16 11 N -0.54 -18.76 4.46 -871.12 -3.88 -22.64 16 12 C 0.08 3.24 4.69 86.30 0.40 3.64 16 13 C 0.00 0.10 4.06 29.85 0.12 0.22 16 14 C -0.53 -31.49 9.66 25.60 0.25 -31.24 16 15 H 0.03 2.15 7.99 -2.91 -0.02 2.12 16 16 C 0.01 0.53 5.47 84.65 0.46 0.99 16 17 N -0.95 -60.46 13.96 21.45 0.30 -60.16 16 18 Si 0.95 45.74 27.47 68.60 1.88 47.63 16 19 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 20 H -0.25 -11.41 6.54 99.48 0.65 -10.76 16 21 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 22 H 0.05 1.40 6.41 -2.39 -0.02 1.39 16 23 H 0.09 1.65 6.03 -2.39 -0.01 1.64 16 24 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 25 H 0.06 0.96 6.07 -2.39 -0.01 0.94 16 26 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.40 3.09 9.12 -74.06 -0.68 2.42 16 28 H 0.07 1.61 7.90 -2.39 -0.02 1.59 16 29 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.03 0.90 8.14 -2.39 -0.02 0.89 16 33 H 0.06 2.18 6.42 -2.39 -0.02 2.17 16 34 H 0.07 3.00 5.59 -2.39 -0.01 2.98 16 35 H 0.01 0.63 8.07 -2.39 -0.02 0.61 16 36 H 0.02 0.76 5.65 -2.38 -0.01 0.75 16 37 H 0.02 0.86 7.57 -2.39 -0.02 0.84 16 38 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 Total: -1.00 -68.77 289.35 -0.22 -68.99 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: 0.30 Total: 8.37 kcal Atomic # 6 Polarization: -32.99 SS G_CDS: 3.16 Total: -29.83 kcal Atomic # 7 Polarization: -79.22 SS G_CDS: -3.58 Total: -82.81 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: -1.97 Total: -12.34 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 1.88 Total: 47.63 kcal Total: -68.77 -0.22 -68.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591056120.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.458 kcal (2) G-P(sol) polarization free energy of solvation -68.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds