Wall clock time and date at job start Sun Mar 29 2020 22:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46577 * 2 1 4 4 C 1.53034 * 109.46577 * 240.02243 * 2 1 3 5 5 H 1.09002 * 109.50678 * 179.22292 * 4 2 1 6 6 C 1.52995 * 109.50523 * 59.10333 * 4 2 1 7 7 O 1.42900 * 109.47284 * 175.00319 * 6 4 2 8 8 C 1.53120 * 109.27691 * 299.16320 * 4 2 1 9 9 C 1.53123 * 109.15984 * 302.34566 * 8 4 2 10 10 C 1.53036 * 109.27927 * 57.65420 * 9 8 4 11 11 N 1.46847 * 109.52359 * 300.81865 * 10 9 8 12 12 C 1.46896 * 111.00265 * 185.84000 * 11 10 9 13 13 C 1.53002 * 109.47054 * 45.78732 * 12 11 10 14 14 C 1.50698 * 109.46887 * 179.97438 * 13 12 11 15 15 H 1.07999 * 120.00233 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99645 * 180.02562 * 14 13 12 17 17 N 1.31510 * 119.99771 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 119.99981 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.46829 * 90.00419 * 18 16 14 20 20 H 1.48497 * 109.46973 * 210.00274 * 18 16 14 21 21 H 1.48499 * 109.47229 * 330.00334 * 18 16 14 22 22 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46832 * 59.97975 * 1 2 3 24 24 H 1.09004 * 109.47261 * 299.97956 * 1 2 3 25 25 H 1.09002 * 109.47317 * 295.00284 * 6 4 2 26 26 H 1.09005 * 109.47254 * 55.00277 * 6 4 2 27 27 H 0.96708 * 113.99618 * 179.97438 * 7 6 4 28 28 H 1.08996 * 109.52367 * 62.24699 * 8 4 2 29 29 H 1.08997 * 109.52576 * 182.37874 * 8 4 2 30 30 H 1.09004 * 109.50391 * 177.59763 * 9 8 4 31 31 H 1.08996 * 109.50097 * 297.71119 * 9 8 4 32 32 H 1.09002 * 109.46114 * 60.83641 * 10 9 8 33 33 H 1.09003 * 109.46282 * 180.81755 * 10 9 8 34 34 H 1.08994 * 109.47381 * 165.79554 * 12 11 10 35 35 H 1.09003 * 109.47103 * 285.79436 * 12 11 10 36 36 H 1.08996 * 109.47180 * 300.00636 * 13 12 11 37 37 H 1.09003 * 109.46591 * 60.00390 * 13 12 11 38 38 H 0.97007 * 119.99977 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7209 -1.2498 5 1 3.1299 -0.7093 -1.2575 6 6 1.5120 -0.0130 -2.4991 7 8 2.0811 -0.6143 -3.6638 8 6 1.5443 -2.1697 -1.2354 9 6 2.0270 -2.8531 0.0471 10 6 1.5174 -2.0703 1.2593 11 7 2.0193 -0.6916 1.1995 12 6 1.6651 0.0509 2.4166 13 6 1.9651 -0.8106 3.6450 14 6 1.6023 -0.0486 4.8935 15 1 1.1979 0.9500 4.8184 16 6 1.7868 -0.6264 6.1318 17 7 1.4697 0.0383 7.2213 18 14 2.4857 -2.3539 6.2616 19 1 3.9664 -2.2834 6.3495 20 1 1.9484 -3.0150 7.4779 21 1 2.0978 -3.1364 5.0606 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5142 -0.8898 24 1 -0.3634 0.5135 0.8902 25 1 0.4264 -0.1039 -2.5369 26 1 1.7873 1.0411 -2.4631 27 1 1.7896 -0.2150 -4.4950 28 1 0.4549 -2.1823 -1.2670 29 1 1.9401 -2.6987 -2.1022 30 1 1.6415 -3.8721 0.0836 31 1 3.1166 -2.8750 0.0598 32 1 0.4274 -2.0606 1.2534 33 1 1.8714 -2.5461 2.1739 34 1 2.2501 0.9693 2.4651 35 1 0.6034 0.2970 2.3960 36 1 1.3801 -1.7289 3.5963 37 1 3.0267 -1.0567 3.6655 38 1 1.5992 -0.3683 8.0925 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591056121.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:22 Heat of formation + Delta-G solvation = -59.081404 kcal Electronic energy + Delta-G solvation = -16645.372195 eV Core-core repulsion = 14101.241026 eV Total energy + Delta-G solvation = -2544.131169 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.78548 -36.87282 -34.29116 -32.49612 -32.10130 -29.80651 -27.55721 -25.68777 -24.72731 -22.24648 -22.04370 -19.61725 -18.26809 -17.47367 -16.97502 -15.57048 -15.33641 -14.59037 -14.49738 -14.24024 -14.06079 -13.18842 -12.99627 -12.76752 -12.69869 -12.43247 -12.28771 -11.79237 -11.36556 -11.20216 -11.03833 -10.83494 -10.44419 -10.30575 -10.16442 -10.03496 -9.86111 -9.71685 -9.60760 -9.11832 -8.52474 -7.70928 -6.04135 -4.02073 3.32552 3.39455 3.42948 3.98525 4.46028 4.51202 4.78902 4.95418 5.07395 5.24224 5.29342 5.31125 5.39472 5.47937 5.57377 5.64761 5.75984 5.87567 5.89654 6.00743 6.06903 6.12811 6.23531 6.28829 6.33891 6.43701 6.51682 6.66534 6.78072 7.18254 7.36705 7.47633 7.60729 7.70060 7.87351 8.53705 9.00101 9.58400 11.09304 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.049278 B = 0.006186 C = 0.005742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.071575 B = 4525.183025 C = 4875.265762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.088 3.912 3 H 0.079 0.921 4 C -0.078 4.078 5 H 0.083 0.917 6 C 0.080 3.920 7 O -0.573 6.573 8 C -0.110 4.110 9 C -0.118 4.118 10 C 0.045 3.955 11 N -0.534 5.534 12 C 0.068 3.932 13 C -0.014 4.014 14 C -0.520 4.520 15 H 0.071 0.929 16 C 0.068 3.932 17 N -0.904 5.904 18 Si 0.881 3.119 19 H -0.276 1.276 20 H -0.289 1.289 21 H -0.266 1.266 22 H 0.062 0.938 23 H 0.055 0.945 24 H 0.063 0.937 25 H 0.046 0.954 26 H 0.044 0.956 27 H 0.375 0.625 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.033 0.967 33 H 0.086 0.914 34 H 0.067 0.933 35 H 0.031 0.969 36 H 0.019 0.981 37 H 0.020 0.980 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.216 -2.556 -19.169 19.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.021 4.021 3 H 0.097 0.903 4 C -0.096 4.096 5 H 0.101 0.899 6 C 0.002 3.998 7 O -0.378 6.378 8 C -0.147 4.147 9 C -0.156 4.156 10 C -0.083 4.083 11 N -0.257 5.257 12 C -0.059 4.059 13 C -0.052 4.052 14 C -0.559 4.559 15 H 0.089 0.911 16 C -0.134 4.134 17 N -0.543 5.543 18 Si 0.708 3.292 19 H -0.202 1.202 20 H -0.215 1.215 21 H -0.191 1.191 22 H 0.081 0.919 23 H 0.074 0.926 24 H 0.082 0.918 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.221 0.779 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.052 0.948 33 H 0.104 0.896 34 H 0.085 0.915 35 H 0.049 0.951 36 H 0.037 0.963 37 H 0.038 0.962 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.413 -2.961 -18.524 18.764 hybrid contribution -0.872 -0.354 -0.061 0.943 sum -1.285 -3.315 -18.585 18.922 Atomic orbital electron populations 1.22592 0.98086 1.02466 1.02056 1.21521 0.92477 0.97808 0.90299 0.90315 1.21124 1.01641 0.95251 0.91632 0.89855 1.22297 0.96400 0.95646 0.85461 1.86488 1.72541 1.62524 1.16217 1.21567 1.00143 0.95107 0.97892 1.21620 1.01618 0.98063 0.94257 1.22232 0.97417 0.89800 0.98877 1.62222 1.59160 1.02106 1.02249 1.22161 0.98199 0.97364 0.88167 1.19717 0.96839 0.95712 0.92900 1.21079 1.42760 1.02881 0.89143 0.91118 1.24996 0.94978 0.97668 0.95710 1.69915 1.48794 1.37790 0.97801 0.86762 0.79651 0.85190 0.77568 1.20200 1.21473 1.19064 0.91906 0.92635 0.91821 0.93551 0.93737 0.77887 0.92469 0.91728 0.92044 0.91350 0.94844 0.89625 0.91456 0.95059 0.96333 0.96190 0.92740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.56 7.83 37.16 0.29 -2.27 16 2 C 0.09 1.26 2.47 -67.72 -0.17 1.09 16 3 H 0.08 1.11 8.12 -51.93 -0.42 0.69 16 4 C -0.08 -1.00 2.37 -90.54 -0.21 -1.21 16 5 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 6 C 0.08 0.83 5.90 37.16 0.22 1.05 16 7 O -0.57 -5.95 13.25 -35.23 -0.47 -6.42 16 8 C -0.11 -1.39 4.85 -26.61 -0.13 -1.52 16 9 C -0.12 -1.64 6.09 -26.65 -0.16 -1.80 16 10 C 0.04 0.74 4.55 -3.83 -0.02 0.73 16 11 N -0.53 -9.33 4.75 -226.69 -1.08 -10.41 16 12 C 0.07 1.38 5.09 -3.82 -0.02 1.36 16 13 C -0.01 -0.34 3.29 -27.88 -0.09 -0.43 16 14 C -0.52 -14.94 9.66 -34.44 -0.33 -15.27 16 15 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 16 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 17 N -0.90 -28.07 13.96 55.43 0.77 -27.29 16 18 Si 0.88 21.99 27.47 -169.99 -4.67 17.32 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 21 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 22 H 0.06 0.85 4.80 -51.93 -0.25 0.60 16 23 H 0.05 0.61 6.53 -51.93 -0.34 0.27 16 24 H 0.06 0.93 6.35 -51.93 -0.33 0.60 16 25 H 0.05 0.44 6.70 -51.93 -0.35 0.10 16 26 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.37 2.09 9.12 45.56 0.42 2.51 16 28 H 0.06 0.70 6.56 -51.93 -0.34 0.36 16 29 H 0.06 0.81 7.90 -51.93 -0.41 0.40 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.03 0.55 6.19 -51.93 -0.32 0.23 16 33 H 0.09 1.59 5.81 -51.93 -0.30 1.29 16 34 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 35 H 0.03 0.64 6.07 -51.93 -0.32 0.33 16 36 H 0.02 0.45 5.27 -51.93 -0.27 0.17 16 37 H 0.02 0.49 7.57 -51.93 -0.39 0.10 16 38 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 281.74 15.07 4.25 4.25 Total: -1.00 -31.47 281.74 -7.24 -38.71 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -5.33 Total: 0.22 kcal Atomic # 6 Polarization: -15.66 SS G_CDS: -0.72 Total: -16.38 kcal Atomic # 7 Polarization: -37.40 SS G_CDS: -0.30 Total: -37.71 kcal Atomic # 8 Polarization: -5.95 SS G_CDS: -0.47 Total: -6.42 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.67 Total: 17.32 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -31.47 -7.24 -38.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591056121.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.369 kcal (2) G-P(sol) polarization free energy of solvation -31.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds