Wall clock time and date at job start Sun Mar 29 2020 22:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46577 * 2 1 4 4 C 1.53034 * 109.46577 * 240.02243 * 2 1 3 5 5 H 1.09002 * 109.50678 * 179.22292 * 4 2 1 6 6 C 1.52995 * 109.50523 * 59.10333 * 4 2 1 7 7 O 1.42900 * 109.47284 * 175.00319 * 6 4 2 8 8 C 1.53120 * 109.27691 * 299.16320 * 4 2 1 9 9 C 1.53123 * 109.15984 * 302.34566 * 8 4 2 10 10 C 1.53036 * 109.27927 * 57.65420 * 9 8 4 11 11 N 1.46847 * 109.52359 * 300.81865 * 10 9 8 12 12 C 1.46896 * 111.00265 * 185.84000 * 11 10 9 13 13 C 1.53002 * 109.47054 * 45.78732 * 12 11 10 14 14 C 1.50698 * 109.46887 * 179.97438 * 13 12 11 15 15 H 1.07999 * 120.00233 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99645 * 180.02562 * 14 13 12 17 17 N 1.31510 * 119.99771 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 119.99981 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.46829 * 90.00419 * 18 16 14 20 20 H 1.48497 * 109.46973 * 210.00274 * 18 16 14 21 21 H 1.48499 * 109.47229 * 330.00334 * 18 16 14 22 22 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46832 * 59.97975 * 1 2 3 24 24 H 1.09004 * 109.47261 * 299.97956 * 1 2 3 25 25 H 1.09002 * 109.47317 * 295.00284 * 6 4 2 26 26 H 1.09005 * 109.47254 * 55.00277 * 6 4 2 27 27 H 0.96708 * 113.99618 * 179.97438 * 7 6 4 28 28 H 1.08996 * 109.52367 * 62.24699 * 8 4 2 29 29 H 1.08997 * 109.52576 * 182.37874 * 8 4 2 30 30 H 1.09004 * 109.50391 * 177.59763 * 9 8 4 31 31 H 1.08996 * 109.50097 * 297.71119 * 9 8 4 32 32 H 1.09002 * 109.46114 * 60.83641 * 10 9 8 33 33 H 1.09003 * 109.46282 * 180.81755 * 10 9 8 34 34 H 1.08994 * 109.47381 * 165.79554 * 12 11 10 35 35 H 1.09003 * 109.47103 * 285.79436 * 12 11 10 36 36 H 1.08996 * 109.47180 * 300.00636 * 13 12 11 37 37 H 1.09003 * 109.46591 * 60.00390 * 13 12 11 38 38 H 0.97007 * 119.99977 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7209 -1.2498 5 1 3.1299 -0.7093 -1.2575 6 6 1.5120 -0.0130 -2.4991 7 8 2.0811 -0.6143 -3.6638 8 6 1.5443 -2.1697 -1.2354 9 6 2.0270 -2.8531 0.0471 10 6 1.5174 -2.0703 1.2593 11 7 2.0193 -0.6916 1.1995 12 6 1.6651 0.0509 2.4166 13 6 1.9651 -0.8106 3.6450 14 6 1.6023 -0.0486 4.8935 15 1 1.1979 0.9500 4.8184 16 6 1.7868 -0.6264 6.1318 17 7 1.4697 0.0383 7.2213 18 14 2.4857 -2.3539 6.2616 19 1 3.9664 -2.2834 6.3495 20 1 1.9484 -3.0150 7.4779 21 1 2.0978 -3.1364 5.0606 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5142 -0.8898 24 1 -0.3634 0.5135 0.8902 25 1 0.4264 -0.1039 -2.5369 26 1 1.7873 1.0411 -2.4631 27 1 1.7896 -0.2150 -4.4950 28 1 0.4549 -2.1823 -1.2670 29 1 1.9401 -2.6987 -2.1022 30 1 1.6415 -3.8721 0.0836 31 1 3.1166 -2.8750 0.0598 32 1 0.4274 -2.0606 1.2534 33 1 1.8714 -2.5461 2.1739 34 1 2.2501 0.9693 2.4651 35 1 0.6034 0.2970 2.3960 36 1 1.3801 -1.7289 3.5963 37 1 3.0267 -1.0567 3.6655 38 1 1.5992 -0.3683 8.0925 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591056121.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:22 Heat of formation + Delta-G solvation = -82.977832 kcal Electronic energy + Delta-G solvation = -16646.408422 eV Core-core repulsion = 14101.241026 eV Total energy + Delta-G solvation = -2545.167395 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.97216 -37.79311 -35.85309 -34.38023 -33.24999 -31.54662 -28.76834 -26.87631 -26.32273 -23.67942 -23.28082 -21.18992 -19.39959 -19.07180 -18.29163 -16.98282 -16.44600 -16.16530 -15.80747 -15.59651 -15.42992 -14.71616 -14.37905 -14.22470 -14.00424 -13.78254 -13.42430 -13.16477 -12.82183 -12.81045 -12.39330 -12.04260 -11.97565 -11.84105 -11.74107 -11.41210 -11.32919 -11.12790 -10.97219 -10.75665 -10.70616 -9.10267 -8.31298 -6.35332 1.35327 1.35954 1.48181 2.34724 2.91262 3.04259 3.49434 3.78164 3.89699 4.06624 4.20361 4.27644 4.38901 4.43546 4.46398 4.53911 4.55620 4.62511 4.75110 4.78564 4.84224 4.94478 4.98311 5.06030 5.11981 5.19140 5.23715 5.33316 5.40708 5.46733 5.58596 5.62782 6.15170 6.29478 6.35187 6.72336 6.97596 7.29322 8.85455 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.049278 B = 0.006186 C = 0.005742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.071575 B = 4525.183025 C = 4875.265762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.086 3.914 3 H 0.079 0.921 4 C -0.075 4.075 5 H 0.066 0.934 6 C 0.086 3.914 7 O -0.590 6.590 8 C -0.104 4.104 9 C -0.112 4.112 10 C 0.043 3.957 11 N -0.541 5.541 12 C 0.080 3.920 13 C -0.006 4.006 14 C -0.532 4.532 15 H 0.032 0.968 16 C 0.008 3.992 17 N -0.950 5.950 18 Si 0.950 3.050 19 H -0.268 1.268 20 H -0.282 1.282 21 H -0.248 1.248 22 H 0.062 0.938 23 H 0.083 0.917 24 H 0.044 0.956 25 H 0.060 0.940 26 H 0.054 0.946 27 H 0.396 0.604 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.061 0.939 32 H 0.035 0.965 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.027 0.973 36 H 0.024 0.976 37 H 0.017 0.983 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.206 -4.022 -21.394 21.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.023 4.023 3 H 0.097 0.903 4 C -0.094 4.094 5 H 0.085 0.915 6 C 0.008 3.992 7 O -0.398 6.398 8 C -0.141 4.141 9 C -0.150 4.150 10 C -0.085 4.085 11 N -0.265 5.265 12 C -0.048 4.048 13 C -0.043 4.043 14 C -0.571 4.571 15 H 0.051 0.949 16 C -0.189 4.189 17 N -0.591 5.591 18 Si 0.773 3.227 19 H -0.193 1.193 20 H -0.208 1.208 21 H -0.171 1.171 22 H 0.081 0.919 23 H 0.102 0.898 24 H 0.063 0.937 25 H 0.079 0.921 26 H 0.072 0.928 27 H 0.246 0.754 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.097 0.903 31 H 0.080 0.920 32 H 0.053 0.947 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.045 0.955 36 H 0.042 0.958 37 H 0.035 0.965 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.410 -4.417 -20.795 21.263 hybrid contribution -0.894 0.196 0.598 1.093 sum -1.304 -4.221 -20.197 20.675 Atomic orbital electron populations 1.22526 0.96963 1.02573 1.02494 1.21614 0.93377 0.97737 0.89543 0.90331 1.21057 1.00652 0.95582 0.92091 0.91516 1.22177 0.96937 0.95636 0.84496 1.86426 1.72965 1.63135 1.17255 1.21529 1.00614 0.94787 0.97207 1.21590 1.01188 0.98678 0.93560 1.22244 0.97504 0.89364 0.99361 1.62176 1.59773 1.02547 1.02016 1.21848 0.97767 0.96634 0.88529 1.19583 0.96416 0.95818 0.92488 1.21405 1.42386 1.01874 0.91419 0.94928 1.25953 0.95315 1.02454 0.95167 1.70060 1.50325 1.40084 0.98581 0.85662 0.79087 0.79561 0.78361 1.19303 1.20765 1.17136 0.91910 0.89820 0.93736 0.92150 0.92779 0.75397 0.91592 0.91129 0.90289 0.92025 0.94720 0.91802 0.92379 0.95471 0.95780 0.96471 0.92421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.57 7.83 71.98 0.56 -4.01 16 2 C 0.09 2.32 2.47 44.93 0.11 2.43 16 3 H 0.08 2.12 8.12 -2.39 -0.02 2.10 16 4 C -0.07 -1.75 2.37 -10.74 -0.03 -1.77 16 5 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 6 C 0.09 1.51 5.90 71.98 0.42 1.93 16 7 O -0.59 -10.36 13.25 -148.98 -1.97 -12.34 16 8 C -0.10 -2.35 4.85 30.68 0.15 -2.20 16 9 C -0.11 -2.88 6.09 30.65 0.19 -2.69 16 10 C 0.04 1.38 4.55 86.33 0.39 1.77 16 11 N -0.54 -18.50 4.75 -871.11 -4.14 -22.64 16 12 C 0.08 3.28 5.09 86.30 0.44 3.72 16 13 C -0.01 -0.27 3.29 29.85 0.10 -0.17 16 14 C -0.53 -31.39 9.66 25.60 0.25 -31.14 16 15 H 0.03 2.10 7.99 -2.91 -0.02 2.08 16 16 C 0.01 0.48 5.47 84.66 0.46 0.94 16 17 N -0.95 -60.33 13.96 21.45 0.30 -60.03 16 18 Si 0.95 45.21 27.47 68.60 1.88 47.10 16 19 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 20 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 21 H -0.25 -10.97 6.54 99.48 0.65 -10.32 16 22 H 0.06 1.54 4.80 -2.39 -0.01 1.53 16 23 H 0.08 1.56 6.53 -2.39 -0.02 1.55 16 24 H 0.04 1.26 6.35 -2.38 -0.02 1.24 16 25 H 0.06 0.91 6.70 -2.39 -0.02 0.89 16 26 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 27 H 0.40 3.09 9.12 -74.05 -0.68 2.42 16 28 H 0.07 1.39 6.56 -2.39 -0.02 1.38 16 29 H 0.07 1.55 7.90 -2.39 -0.02 1.53 16 30 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.03 1.10 6.19 -2.39 -0.01 1.08 16 33 H 0.06 2.30 5.81 -2.39 -0.01 2.29 16 34 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 35 H 0.03 1.13 6.07 -2.39 -0.01 1.12 16 36 H 0.02 1.14 5.27 -2.39 -0.01 1.13 16 37 H 0.02 0.83 7.57 -2.39 -0.02 0.82 16 38 H 0.27 15.77 8.31 -92.70 -0.77 15.00 16 Total: -1.00 -68.27 281.74 -0.57 -68.84 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: 0.31 Total: 10.26 kcal Atomic # 6 Polarization: -34.24 SS G_CDS: 3.05 Total: -31.19 kcal Atomic # 7 Polarization: -78.84 SS G_CDS: -3.84 Total: -82.68 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: -1.97 Total: -12.34 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 1.88 Total: 47.10 kcal Total: -68.27 -0.57 -68.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591056121.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.142 kcal (2) G-P(sol) polarization free energy of solvation -68.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds