Wall clock time and date at job start Sun Mar 29 2020 22:16:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.46518 * 2 1 4 4 C 1.53043 * 109.46168 * 119.96757 * 2 1 3 5 5 H 1.09002 * 109.49803 * 180.77765 * 4 2 1 6 6 C 1.53005 * 109.50138 * 300.89123 * 4 2 1 7 7 O 1.42893 * 109.47082 * 184.99986 * 6 4 2 8 8 C 1.53113 * 109.27906 * 60.83366 * 4 2 1 9 9 C 1.53120 * 109.16191 * 57.65288 * 8 4 2 10 10 C 1.53033 * 109.28099 * 302.34923 * 9 8 4 11 11 N 1.46844 * 109.52669 * 59.17356 * 10 9 8 12 12 C 1.46898 * 111.00317 * 174.16475 * 11 10 9 13 13 C 1.53006 * 109.47006 * 294.20906 * 12 11 10 14 14 C 1.50698 * 109.47184 * 179.97438 * 13 12 11 15 15 H 1.08005 * 119.99819 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00046 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00192 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99979 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47297 * 180.02562 * 18 16 14 20 20 H 1.48503 * 109.47261 * 60.00310 * 18 16 14 21 21 H 1.48500 * 109.47454 * 300.00304 * 18 16 14 22 22 H 1.09000 * 109.47159 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.46820 * 299.98276 * 1 2 3 24 24 H 1.08997 * 109.46988 * 59.97996 * 1 2 3 25 25 H 1.08994 * 109.46946 * 305.00303 * 6 4 2 26 26 H 1.09000 * 109.46689 * 65.00113 * 6 4 2 27 27 H 0.96693 * 114.00223 * 180.02562 * 7 6 4 28 28 H 1.08994 * 109.52553 * 177.55973 * 8 4 2 29 29 H 1.09005 * 109.52575 * 297.75430 * 8 4 2 30 30 H 1.09005 * 109.50365 * 62.28256 * 9 8 4 31 31 H 1.08994 * 109.50833 * 182.40276 * 9 8 4 32 32 H 1.08998 * 109.46072 * 299.16007 * 10 9 8 33 33 H 1.09003 * 109.46658 * 179.19466 * 10 9 8 34 34 H 1.09001 * 109.47062 * 174.21160 * 12 11 10 35 35 H 1.09001 * 109.47392 * 54.20607 * 12 11 10 36 36 H 1.08998 * 109.46509 * 60.00221 * 13 12 11 37 37 H 1.08993 * 109.46955 * 299.99780 * 13 12 11 38 38 H 0.97001 * 119.99934 * 359.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7208 1.2501 5 1 3.1298 -0.7091 1.2577 6 6 1.5119 -0.0124 2.4992 7 8 2.0809 -0.6135 3.6640 8 6 1.5442 -2.1694 1.2359 9 6 2.0268 -2.8532 -0.0463 10 6 1.5174 -2.0707 -1.2588 11 7 2.0192 -0.6919 -1.1993 12 6 1.6651 0.0503 -2.4165 13 6 2.3961 -0.5576 -3.6153 14 6 2.0323 0.2034 -4.8642 15 1 1.3484 1.0375 -4.8083 16 6 2.5733 -0.1645 -6.0778 17 7 3.4064 -1.1798 -6.1458 18 14 2.1229 0.7793 -7.6257 19 1 2.8323 0.1892 -8.7893 20 1 2.5212 2.2016 -7.4718 21 1 0.6567 0.6970 -7.8467 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5136 0.8902 24 1 -0.3633 0.5141 -0.8898 25 1 1.7872 1.0416 2.4629 26 1 0.4264 -0.1033 2.5369 27 1 1.7896 -0.2140 4.4950 28 1 1.9408 -2.6986 2.1023 29 1 0.4547 -2.1820 1.2675 30 1 3.1165 -2.8751 -0.0592 31 1 1.6413 -3.8721 -0.0827 32 1 0.4274 -2.0609 -1.2529 33 1 1.8711 -2.5468 -2.1733 34 1 1.9578 1.0942 -2.3036 35 1 0.5889 -0.0099 -2.5786 36 1 2.1033 -1.6014 -3.7281 37 1 3.4722 -0.4974 -3.4533 38 1 3.6405 -1.6697 -5.3419 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591056123.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:26 Heat of formation + Delta-G solvation = -69.927208 kcal Electronic energy + Delta-G solvation = -16566.919997 eV Core-core repulsion = 14022.318519 eV Total energy + Delta-G solvation = -2544.601478 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.74538 -36.84384 -34.34943 -32.67341 -32.08200 -29.25280 -27.35111 -25.58837 -24.29704 -22.43792 -22.00289 -20.09490 -18.31272 -17.48914 -16.75032 -15.72112 -15.26400 -14.62429 -14.41489 -14.11957 -13.68447 -13.40644 -13.04345 -12.79180 -12.61450 -12.35025 -11.95453 -11.78594 -11.41008 -11.19286 -10.90445 -10.78557 -10.46575 -10.33671 -10.14968 -10.10231 -9.88880 -9.84568 -9.53327 -8.53083 -8.27302 -7.71012 -6.32441 -4.00922 3.45496 3.47751 3.66481 3.98878 4.48719 4.60603 4.79988 4.95430 5.07242 5.23570 5.29423 5.38129 5.45160 5.47432 5.57603 5.64133 5.74726 5.87040 5.88236 6.00695 6.05204 6.14391 6.23312 6.30411 6.33455 6.45422 6.52142 6.65763 6.86616 7.34635 7.46508 7.50127 7.74353 7.77954 8.28213 8.50352 8.92713 9.71367 11.08675 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.052853 B = 0.005506 C = 0.005256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.644662 B = 5084.058947 C = 5325.964243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.088 3.912 3 H 0.078 0.922 4 C -0.078 4.078 5 H 0.083 0.917 6 C 0.080 3.920 7 O -0.572 6.572 8 C -0.109 4.109 9 C -0.117 4.117 10 C 0.050 3.950 11 N -0.532 5.532 12 C 0.071 3.929 13 C 0.015 3.985 14 C -0.603 4.603 15 H 0.046 0.954 16 C 0.016 3.984 17 N -0.913 5.913 18 Si 1.069 2.931 19 H -0.282 1.282 20 H -0.288 1.288 21 H -0.289 1.289 22 H 0.062 0.938 23 H 0.055 0.945 24 H 0.059 0.941 25 H 0.044 0.956 26 H 0.046 0.954 27 H 0.375 0.625 28 H 0.065 0.935 29 H 0.056 0.944 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.030 0.970 33 H 0.082 0.918 34 H 0.060 0.940 35 H 0.023 0.977 36 H 0.008 0.992 37 H 0.015 0.985 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.742 0.902 16.723 17.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.022 4.022 3 H 0.096 0.904 4 C -0.097 4.097 5 H 0.102 0.898 6 C 0.002 3.998 7 O -0.377 6.377 8 C -0.147 4.147 9 C -0.155 4.155 10 C -0.078 4.078 11 N -0.255 5.255 12 C -0.056 4.056 13 C -0.022 4.022 14 C -0.642 4.642 15 H 0.065 0.935 16 C -0.188 4.188 17 N -0.549 5.549 18 Si 0.897 3.103 19 H -0.208 1.208 20 H -0.215 1.215 21 H -0.216 1.216 22 H 0.081 0.919 23 H 0.074 0.926 24 H 0.078 0.922 25 H 0.062 0.938 26 H 0.064 0.936 27 H 0.221 0.779 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.048 0.952 33 H 0.100 0.900 34 H 0.079 0.921 35 H 0.041 0.959 36 H 0.026 0.974 37 H 0.033 0.967 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.666 0.583 14.639 15.375 hybrid contribution -1.541 0.447 2.016 2.577 sum -6.207 1.029 16.655 17.804 Atomic orbital electron populations 1.22584 0.98189 1.02342 1.01863 1.21560 0.92358 0.97802 0.90450 0.90399 1.21130 1.01715 0.95246 0.91591 0.89813 1.22291 0.96343 0.95655 0.85483 1.86488 1.72541 1.62495 1.16194 1.21563 1.00046 0.95107 0.97936 1.21602 1.01743 0.97997 0.94134 1.22133 0.97008 0.89726 0.98903 1.62168 1.59205 1.02028 1.02127 1.22164 0.97509 0.97020 0.88872 1.19229 0.95728 0.95723 0.91563 1.22009 1.30755 1.17676 0.93747 0.93539 1.25812 0.94232 0.97068 1.01698 1.70765 1.32336 1.19057 1.32713 0.83553 0.75870 0.75321 0.75552 1.20761 1.21471 1.21558 0.91938 0.92647 0.92219 0.93756 0.93595 0.77897 0.91672 0.92530 0.91250 0.92006 0.95154 0.90016 0.92113 0.95873 0.97401 0.96665 0.92006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.57 7.81 37.16 0.29 -2.28 16 2 C 0.09 1.31 2.46 -67.72 -0.17 1.14 16 3 H 0.08 1.17 8.02 -51.93 -0.42 0.75 16 4 C -0.08 -1.05 2.37 -90.54 -0.21 -1.26 16 5 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 6 C 0.08 0.87 5.90 37.16 0.22 1.09 16 7 O -0.57 -6.15 13.25 -35.23 -0.47 -6.61 16 8 C -0.11 -1.43 4.85 -26.61 -0.13 -1.56 16 9 C -0.12 -1.69 6.09 -26.65 -0.16 -1.85 16 10 C 0.05 0.87 5.00 -3.84 -0.02 0.85 16 11 N -0.53 -9.80 4.60 -226.69 -1.04 -10.84 16 12 C 0.07 1.53 4.36 -3.82 -0.02 1.51 16 13 C 0.01 0.39 4.21 -27.88 -0.12 0.27 16 14 C -0.60 -17.50 9.11 -34.44 -0.31 -17.81 16 15 H 0.05 1.32 7.74 -52.48 -0.41 0.91 16 16 C 0.02 0.46 5.46 -17.82 -0.10 0.37 16 17 N -0.91 -28.46 13.65 55.43 0.76 -27.71 16 18 Si 1.07 25.64 29.90 -169.99 -5.08 20.56 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 22 H 0.06 0.85 4.80 -51.93 -0.25 0.60 16 23 H 0.05 0.61 6.53 -51.93 -0.34 0.28 16 24 H 0.06 0.88 6.77 -51.93 -0.35 0.52 16 25 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.45 6.70 -51.93 -0.35 0.10 16 27 H 0.37 2.20 9.12 45.56 0.42 2.61 16 28 H 0.06 0.84 7.90 -51.93 -0.41 0.43 16 29 H 0.06 0.71 6.56 -51.93 -0.34 0.37 16 30 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.03 0.51 6.19 -51.93 -0.32 0.19 16 33 H 0.08 1.59 6.21 -51.93 -0.32 1.27 16 34 H 0.06 1.31 7.99 -51.93 -0.41 0.89 16 35 H 0.02 0.50 6.95 -51.93 -0.36 0.14 16 36 H 0.01 0.21 6.30 -51.93 -0.33 -0.11 16 37 H 0.02 0.43 8.01 -51.93 -0.42 0.01 16 38 H 0.27 8.42 7.22 -40.82 -0.29 8.12 16 LS Contribution 285.91 15.07 4.31 4.31 Total: -1.00 -31.98 285.91 -7.65 -39.63 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -5.39 Total: 0.20 kcal Atomic # 6 Polarization: -18.81 SS G_CDS: -0.73 Total: -19.54 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: -0.29 Total: -38.55 kcal Atomic # 8 Polarization: -6.15 SS G_CDS: -0.47 Total: -6.61 kcal Atomic # 14 Polarization: 25.64 SS G_CDS: -5.08 Total: 20.56 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -31.98 -7.65 -39.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591056123.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.299 kcal (2) G-P(sol) polarization free energy of solvation -31.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds