Wall clock time and date at job start Sun Mar 29 2020 22:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.46518 * 2 1 4 4 C 1.53043 * 109.46168 * 119.96757 * 2 1 3 5 5 H 1.09002 * 109.49803 * 180.77765 * 4 2 1 6 6 C 1.53005 * 109.50138 * 300.89123 * 4 2 1 7 7 O 1.42893 * 109.47082 * 184.99986 * 6 4 2 8 8 C 1.53113 * 109.27906 * 60.83366 * 4 2 1 9 9 C 1.53120 * 109.16191 * 57.65288 * 8 4 2 10 10 C 1.53033 * 109.28099 * 302.34923 * 9 8 4 11 11 N 1.46844 * 109.52669 * 59.17356 * 10 9 8 12 12 C 1.46898 * 111.00317 * 174.16475 * 11 10 9 13 13 C 1.53006 * 109.47006 * 294.20906 * 12 11 10 14 14 C 1.50698 * 109.47184 * 179.97438 * 13 12 11 15 15 H 1.08005 * 119.99819 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00046 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00192 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99979 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47297 * 180.02562 * 18 16 14 20 20 H 1.48503 * 109.47261 * 60.00310 * 18 16 14 21 21 H 1.48500 * 109.47454 * 300.00304 * 18 16 14 22 22 H 1.09000 * 109.47159 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.46820 * 299.98276 * 1 2 3 24 24 H 1.08997 * 109.46988 * 59.97996 * 1 2 3 25 25 H 1.08994 * 109.46946 * 305.00303 * 6 4 2 26 26 H 1.09000 * 109.46689 * 65.00113 * 6 4 2 27 27 H 0.96693 * 114.00223 * 180.02562 * 7 6 4 28 28 H 1.08994 * 109.52553 * 177.55973 * 8 4 2 29 29 H 1.09005 * 109.52575 * 297.75430 * 8 4 2 30 30 H 1.09005 * 109.50365 * 62.28256 * 9 8 4 31 31 H 1.08994 * 109.50833 * 182.40276 * 9 8 4 32 32 H 1.08998 * 109.46072 * 299.16007 * 10 9 8 33 33 H 1.09003 * 109.46658 * 179.19466 * 10 9 8 34 34 H 1.09001 * 109.47062 * 174.21160 * 12 11 10 35 35 H 1.09001 * 109.47392 * 54.20607 * 12 11 10 36 36 H 1.08998 * 109.46509 * 60.00221 * 13 12 11 37 37 H 1.08993 * 109.46955 * 299.99780 * 13 12 11 38 38 H 0.97001 * 119.99934 * 359.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7208 1.2501 5 1 3.1298 -0.7091 1.2577 6 6 1.5119 -0.0124 2.4992 7 8 2.0809 -0.6135 3.6640 8 6 1.5442 -2.1694 1.2359 9 6 2.0268 -2.8532 -0.0463 10 6 1.5174 -2.0707 -1.2588 11 7 2.0192 -0.6919 -1.1993 12 6 1.6651 0.0503 -2.4165 13 6 2.3961 -0.5576 -3.6153 14 6 2.0323 0.2034 -4.8642 15 1 1.3484 1.0375 -4.8083 16 6 2.5733 -0.1645 -6.0778 17 7 3.4064 -1.1798 -6.1458 18 14 2.1229 0.7793 -7.6257 19 1 2.8323 0.1892 -8.7893 20 1 2.5212 2.2016 -7.4718 21 1 0.6567 0.6970 -7.8467 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5136 0.8902 24 1 -0.3633 0.5141 -0.8898 25 1 1.7872 1.0416 2.4629 26 1 0.4264 -0.1033 2.5369 27 1 1.7896 -0.2140 4.4950 28 1 1.9408 -2.6986 2.1023 29 1 0.4547 -2.1820 1.2675 30 1 3.1165 -2.8751 -0.0592 31 1 1.6413 -3.8721 -0.0827 32 1 0.4274 -2.0609 -1.2529 33 1 1.8711 -2.5468 -2.1733 34 1 1.9578 1.0942 -2.3036 35 1 0.5889 -0.0099 -2.5786 36 1 2.1033 -1.6014 -3.7281 37 1 3.4722 -0.4974 -3.4533 38 1 3.6405 -1.6697 -5.3419 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591056123.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:25 Heat of formation + Delta-G solvation = -93.628552 kcal Electronic energy + Delta-G solvation = -16567.947765 eV Core-core repulsion = 14022.318519 eV Total energy + Delta-G solvation = -2545.629245 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.99520 -37.81303 -36.12336 -34.42558 -33.27584 -31.01423 -28.63977 -26.75905 -26.13966 -24.07311 -23.28867 -21.68224 -19.48323 -18.97417 -18.27417 -17.15267 -16.27405 -16.02510 -15.70477 -15.61359 -15.43092 -14.88891 -14.40485 -14.17338 -14.01459 -13.65537 -13.45474 -13.30139 -12.81561 -12.69071 -12.41608 -12.16551 -12.02901 -11.89305 -11.85624 -11.40540 -11.21487 -11.11870 -10.78803 -10.68108 -10.52679 -9.17895 -8.70308 -6.40399 1.52025 1.61126 1.80463 2.55598 2.87250 3.15703 3.44439 3.72725 3.82010 3.99217 4.15277 4.21854 4.29611 4.38298 4.40542 4.47688 4.49406 4.56618 4.69362 4.73330 4.78178 4.91620 4.92836 4.98255 5.06363 5.12264 5.17881 5.27345 5.35679 5.41752 5.52059 5.89982 6.16334 6.22050 6.28639 6.56751 6.95892 7.42621 8.70610 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.052853 B = 0.005506 C = 0.005256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.644662 B = 5084.058947 C = 5325.964243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.085 3.915 3 H 0.077 0.923 4 C -0.076 4.076 5 H 0.061 0.939 6 C 0.087 3.913 7 O -0.590 6.590 8 C -0.102 4.102 9 C -0.112 4.112 10 C 0.052 3.948 11 N -0.547 5.547 12 C 0.089 3.911 13 C 0.020 3.980 14 C -0.620 4.620 15 H 0.051 0.949 16 C -0.038 4.038 17 N -0.937 5.937 18 Si 1.120 2.880 19 H -0.283 1.283 20 H -0.268 1.268 21 H -0.268 1.268 22 H 0.062 0.938 23 H 0.086 0.914 24 H 0.044 0.956 25 H 0.054 0.946 26 H 0.064 0.936 27 H 0.397 0.603 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.055 0.945 31 H 0.080 0.920 32 H 0.038 0.962 33 H 0.048 0.952 34 H 0.060 0.940 35 H 0.024 0.976 36 H -0.010 1.010 37 H -0.015 1.015 38 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.328 1.901 18.068 19.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.023 4.023 3 H 0.096 0.904 4 C -0.095 4.095 5 H 0.080 0.920 6 C 0.009 3.991 7 O -0.398 6.398 8 C -0.139 4.139 9 C -0.150 4.150 10 C -0.076 4.076 11 N -0.271 5.271 12 C -0.038 4.038 13 C -0.017 4.017 14 C -0.659 4.659 15 H 0.070 0.930 16 C -0.236 4.236 17 N -0.574 5.574 18 Si 0.940 3.060 19 H -0.209 1.209 20 H -0.193 1.193 21 H -0.193 1.193 22 H 0.081 0.919 23 H 0.105 0.895 24 H 0.063 0.937 25 H 0.073 0.927 26 H 0.082 0.918 27 H 0.247 0.753 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.074 0.926 31 H 0.098 0.902 32 H 0.056 0.944 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.042 0.958 36 H 0.008 0.992 37 H 0.003 0.997 38 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -6.265 1.588 16.044 17.297 hybrid contribution -1.010 0.106 1.673 1.957 sum -7.275 1.694 17.717 19.228 Atomic orbital electron populations 1.22509 0.96470 1.02577 1.02671 1.21653 0.93734 0.97562 0.89351 0.90438 1.21073 1.00452 0.95691 0.92328 0.92018 1.22160 0.97037 0.95573 0.84320 1.86426 1.73007 1.63123 1.17266 1.21518 1.00769 0.94706 0.96917 1.21573 1.00892 0.98773 0.93721 1.22099 0.97375 0.89263 0.98862 1.62066 1.60228 1.02555 1.02204 1.21775 0.96579 0.96752 0.88718 1.19103 0.94322 0.94917 0.93373 1.22444 1.30618 1.17881 0.94913 0.93034 1.27492 0.93332 0.97048 1.05683 1.70909 1.34102 1.20437 1.31927 0.82915 0.76797 0.74853 0.71396 1.20850 1.19296 1.19291 0.91931 0.89545 0.93689 0.92743 0.91825 0.75324 0.91008 0.91177 0.92637 0.90161 0.94372 0.93350 0.92195 0.95819 0.99159 0.99651 0.93699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.49 7.81 71.98 0.56 -3.93 16 2 C 0.09 2.44 2.46 44.94 0.11 2.55 16 3 H 0.08 2.22 8.02 -2.39 -0.02 2.20 16 4 C -0.08 -1.91 2.37 -10.74 -0.03 -1.94 16 5 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 6 C 0.09 1.60 5.90 71.98 0.42 2.02 16 7 O -0.59 -10.85 13.25 -148.98 -1.97 -12.83 16 8 C -0.10 -2.45 4.85 30.67 0.15 -2.30 16 9 C -0.11 -3.17 6.09 30.65 0.19 -2.98 16 10 C 0.05 1.81 5.00 86.32 0.43 2.24 16 11 N -0.55 -20.35 4.60 -871.10 -4.01 -24.36 16 12 C 0.09 3.92 4.36 86.31 0.38 4.29 16 13 C 0.02 1.11 4.21 29.85 0.13 1.24 16 14 C -0.62 -36.59 9.11 25.60 0.23 -36.36 16 15 H 0.05 2.93 7.74 -2.91 -0.02 2.90 16 16 C -0.04 -2.28 5.46 84.65 0.46 -1.82 16 17 N -0.94 -59.98 13.65 21.45 0.29 -59.68 16 18 Si 1.12 51.10 29.90 68.60 2.05 53.15 16 19 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 20 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 21 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 22 H 0.06 1.53 4.80 -2.39 -0.01 1.52 16 23 H 0.09 1.58 6.53 -2.38 -0.02 1.56 16 24 H 0.04 1.23 6.77 -2.39 -0.02 1.22 16 25 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.06 0.96 6.70 -2.39 -0.02 0.95 16 27 H 0.40 3.31 9.12 -74.06 -0.68 2.63 16 28 H 0.07 1.68 7.90 -2.39 -0.02 1.66 16 29 H 0.07 1.53 6.56 -2.38 -0.02 1.51 16 30 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 31 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.04 1.26 6.19 -2.39 -0.01 1.25 16 33 H 0.05 1.99 6.21 -2.39 -0.01 1.97 16 34 H 0.06 2.61 7.99 -2.39 -0.02 2.59 16 35 H 0.02 1.03 6.95 -2.39 -0.02 1.01 16 36 H -0.01 -0.57 6.30 -2.39 -0.02 -0.58 16 37 H -0.01 -0.89 8.01 -2.39 -0.02 -0.91 16 38 H 0.25 16.61 7.22 -92.71 -0.67 15.94 16 Total: -1.00 -70.12 285.91 -0.14 -70.26 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: 0.46 Total: 10.43 kcal Atomic # 6 Polarization: -40.01 SS G_CDS: 3.04 Total: -36.97 kcal Atomic # 7 Polarization: -80.33 SS G_CDS: -3.72 Total: -84.05 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: -1.97 Total: -12.83 kcal Atomic # 14 Polarization: 51.10 SS G_CDS: 2.05 Total: 53.15 kcal Total: -70.12 -0.14 -70.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591056123.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.366 kcal (2) G-P(sol) polarization free energy of solvation -70.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds