Wall clock time and date at job start Sun Mar 29 2020 21:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47315 * 2 1 4 4 H 1.08997 * 109.47310 * 56.71050 * 3 2 1 5 5 N 1.46899 * 109.46602 * 296.71710 * 3 2 1 6 6 C 1.46906 * 111.00147 * 303.48212 * 5 3 2 7 7 C 1.50700 * 109.47210 * 184.85573 * 6 5 3 8 8 H 1.07998 * 120.00164 * 359.97438 * 7 6 5 9 9 C 1.37882 * 119.99917 * 179.97438 * 7 6 5 10 10 N 1.31512 * 119.99484 * 179.97438 * 9 7 6 11 11 Si 1.86800 * 119.99809 * 0.02562 * 9 7 6 12 12 H 1.48502 * 109.47197 * 89.99786 * 11 9 7 13 13 H 1.48506 * 109.46943 * 209.99694 * 11 9 7 14 14 H 1.48497 * 109.47227 * 329.99498 * 11 9 7 15 15 C 1.52998 * 109.47259 * 176.71834 * 3 2 1 16 16 C 1.53180 * 109.54143 * 299.81555 * 15 3 2 17 17 C 1.53104 * 109.15447 * 183.24326 * 16 15 3 18 18 O 1.42901 * 109.48500 * 57.47912 * 17 16 15 19 19 C 1.42907 * 114.09721 * 298.88215 * 18 17 16 20 20 C 1.53092 * 109.41046 * 61.16421 * 19 18 17 21 21 H 1.09001 * 109.47071 * 185.43815 * 1 2 3 22 22 H 1.09001 * 109.47230 * 305.43271 * 1 2 3 23 23 H 1.08997 * 109.47227 * 65.43021 * 1 2 3 24 24 H 1.09002 * 109.47191 * 239.99763 * 2 1 3 25 25 H 1.08999 * 109.47318 * 119.99588 * 2 1 3 26 26 H 1.00904 * 111.00470 * 67.43723 * 5 3 2 27 27 H 1.08992 * 109.47398 * 64.85462 * 6 5 3 28 28 H 1.09003 * 109.46721 * 304.85092 * 6 5 3 29 29 H 0.97006 * 119.99220 * 179.97438 * 10 9 7 30 30 H 1.08996 * 109.54469 * 60.00000 * 15 3 2 31 31 H 1.08993 * 109.52341 * 303.06336 * 16 15 3 32 32 H 1.09003 * 109.51919 * 63.25204 * 16 15 3 33 33 H 1.09002 * 109.40601 * 297.49328 * 17 16 15 34 34 H 1.09001 * 109.48087 * 177.50915 * 17 16 15 35 35 H 1.08992 * 109.48140 * 301.17886 * 19 18 17 36 36 H 1.08997 * 109.47537 * 181.14283 * 19 18 17 37 37 H 1.09004 * 109.51721 * 182.48355 * 20 19 18 38 38 H 1.08996 * 109.57521 * 62.32488 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6294 1.9731 0.8590 5 7 1.6162 2.1117 -1.2372 6 6 2.0829 1.3761 -2.4201 7 6 1.7338 2.1518 -3.6640 8 1 1.2166 3.0965 -3.5840 9 6 2.0748 1.6554 -4.9044 10 7 1.7697 2.3322 -5.9899 11 14 2.9687 0.0211 -5.0428 12 1 1.9763 -1.0784 -5.1507 13 1 3.8314 0.0296 -6.2516 14 1 3.8091 -0.1872 -3.8364 15 6 3.5678 1.4433 0.0826 16 6 4.0114 0.7498 1.3744 17 6 5.5363 0.8270 1.4877 18 8 5.9482 2.1950 1.4549 19 6 5.6022 2.8796 0.2492 20 6 4.0799 2.8870 0.0871 21 1 -0.3633 -1.0230 0.0974 22 1 -0.3634 0.5958 0.8373 23 1 -0.3633 0.4273 -0.9346 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 0.6146 2.2322 -1.2583 27 1 1.6009 0.3991 -2.4539 28 1 3.1637 1.2464 -2.3641 29 1 2.0099 1.9831 -6.8626 30 1 3.9796 0.9130 -0.7760 31 1 3.5580 1.2496 2.2303 32 1 3.6987 -0.2941 1.3532 33 1 5.9891 0.2908 0.6537 34 1 5.8544 0.3740 2.4268 35 1 6.0558 2.3704 -0.6010 36 1 5.9677 3.9054 0.2961 37 1 3.8161 3.3700 -0.8538 38 1 3.6271 3.4315 0.9156 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591748288.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:49 Heat of formation + Delta-G solvation = -65.216811 kcal Electronic energy + Delta-G solvation = -16863.519317 eV Core-core repulsion = 14319.122097 eV Total energy + Delta-G solvation = -2544.397220 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.50344 -37.21396 -33.26700 -32.43103 -31.37009 -30.60695 -27.68313 -25.75809 -23.56799 -22.77395 -21.98062 -20.24158 -18.79416 -17.00773 -16.08851 -15.80144 -15.13170 -14.68851 -14.34966 -14.21159 -14.13339 -13.56244 -13.21831 -12.72331 -12.44522 -12.12815 -11.97797 -11.92079 -11.28212 -11.23731 -11.06943 -10.82136 -10.64383 -10.53669 -10.16244 -10.04822 -9.90662 -9.76827 -9.33211 -9.14745 -8.59796 -7.41608 -6.06564 -4.03292 3.25401 3.33581 3.34724 4.03597 4.40147 4.80157 4.87027 5.10542 5.21223 5.25505 5.28146 5.38674 5.43566 5.52526 5.57757 5.67894 5.69812 5.81952 5.93778 6.01707 6.03570 6.13564 6.14569 6.23531 6.37289 6.45476 6.46791 6.69741 6.74367 6.86945 7.04936 7.36226 7.64616 7.92039 8.35634 8.66616 9.03131 9.56162 11.06996 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.023487 B = 0.008845 C = 0.007636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.848739 B = 3164.919186 C = 3665.781880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.164 4.164 3 C 0.093 3.907 4 H 0.069 0.931 5 N -0.671 5.671 6 C 0.161 3.839 7 C -0.512 4.512 8 H 0.078 0.922 9 C 0.068 3.932 10 N -0.901 5.901 11 Si 0.875 3.125 12 H -0.278 1.278 13 H -0.286 1.286 14 H -0.268 1.268 15 C -0.081 4.081 16 C -0.151 4.151 17 C 0.062 3.938 18 O -0.390 6.390 19 C 0.057 3.943 20 C -0.138 4.138 21 H 0.048 0.952 22 H 0.050 0.950 23 H 0.059 0.941 24 H 0.066 0.934 25 H 0.058 0.942 26 H 0.335 0.665 27 H -0.018 1.018 28 H 0.027 0.973 29 H 0.263 0.737 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.046 0.954 34 H 0.087 0.913 35 H 0.048 0.952 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.945 -4.399 14.284 15.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.203 4.203 3 C -0.018 4.018 4 H 0.087 0.913 5 N -0.300 5.300 6 C 0.033 3.967 7 C -0.551 4.551 8 H 0.096 0.904 9 C -0.133 4.133 10 N -0.540 5.540 11 Si 0.702 3.298 12 H -0.204 1.204 13 H -0.212 1.212 14 H -0.193 1.193 15 C -0.100 4.100 16 C -0.190 4.190 17 C -0.015 4.015 18 O -0.309 6.309 19 C -0.019 4.019 20 C -0.175 4.175 21 H 0.067 0.933 22 H 0.069 0.931 23 H 0.078 0.922 24 H 0.085 0.915 25 H 0.077 0.923 26 H 0.153 0.847 27 H 0.000 1.000 28 H 0.045 0.955 29 H 0.073 0.927 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.064 0.936 34 H 0.105 0.895 35 H 0.066 0.934 36 H 0.108 0.892 37 H 0.113 0.887 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.586 -3.858 14.213 15.425 hybrid contribution -0.347 -1.899 -0.546 2.006 sum 4.239 -5.757 13.667 15.424 Atomic orbital electron populations 1.21747 0.96062 1.01093 1.01966 1.22347 0.96216 0.99769 1.01998 1.21568 0.94049 0.91726 0.94413 0.91282 1.60609 1.17919 1.50599 1.00907 1.20053 0.95616 0.92143 0.88859 1.21096 1.37770 1.07655 0.88536 0.90375 1.24902 0.95632 0.97017 0.95794 1.69902 1.47623 1.38668 0.97833 0.86874 0.80321 0.84807 0.77791 1.20411 1.21196 1.19272 1.21204 0.95573 0.96413 0.96826 1.22300 0.96453 1.01259 0.98943 1.22520 0.94119 0.83387 1.01433 1.87865 1.79801 1.23682 1.39533 1.22680 0.95687 0.96973 0.86552 1.22067 0.94467 0.96943 1.04068 0.93288 0.93056 0.92177 0.91489 0.92319 0.84731 1.00007 0.95494 0.92719 0.90930 0.91313 0.91104 0.93562 0.89483 0.93405 0.89178 0.88737 0.91842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.52 37.16 0.35 -1.76 16 2 C -0.16 -2.45 4.80 -26.73 -0.13 -2.58 16 3 C 0.09 1.49 2.14 -67.71 -0.14 1.35 16 4 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 5 N -0.67 -13.17 5.60 -107.99 -0.61 -13.77 16 6 C 0.16 3.75 3.65 -4.97 -0.02 3.73 16 7 C -0.51 -14.41 9.91 -34.44 -0.34 -14.75 16 8 H 0.08 2.40 8.06 -52.49 -0.42 1.98 16 9 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 10 N -0.90 -27.62 13.96 55.43 0.77 -26.85 16 11 Si 0.87 21.51 27.47 -169.99 -4.67 16.84 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 14 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 15 C -0.08 -1.26 1.59 -90.44 -0.14 -1.41 16 16 C -0.15 -1.93 4.98 -26.58 -0.13 -2.06 16 17 C 0.06 0.78 6.84 37.21 0.25 1.03 16 18 O -0.39 -5.70 10.77 -35.23 -0.38 -6.08 16 19 C 0.06 0.82 6.84 37.21 0.25 1.08 16 20 C -0.14 -2.14 5.22 -26.59 -0.14 -2.28 16 21 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 22 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.06 0.94 7.19 -51.93 -0.37 0.57 16 24 H 0.07 1.15 6.27 -51.93 -0.33 0.82 16 25 H 0.06 0.76 6.34 -51.93 -0.33 0.43 16 26 H 0.33 6.45 7.57 -39.29 -0.30 6.16 16 27 H -0.02 -0.41 5.89 -51.93 -0.31 -0.72 16 28 H 0.03 0.65 5.22 -51.93 -0.27 0.38 16 29 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 30 H 0.07 1.29 6.39 -51.93 -0.33 0.96 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 0.83 6.55 -51.93 -0.34 0.49 16 33 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 37 H 0.09 1.70 7.72 -51.93 -0.40 1.30 16 38 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 288.31 15.07 4.34 4.34 Total: -1.00 -29.81 288.31 -7.19 -37.00 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -6.37 Total: 4.29 kcal Atomic # 6 Polarization: -15.51 SS G_CDS: -0.28 Total: -15.79 kcal Atomic # 7 Polarization: -40.79 SS G_CDS: 0.17 Total: -40.62 kcal Atomic # 8 Polarization: -5.70 SS G_CDS: -0.38 Total: -6.08 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.84 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -29.81 -7.19 -37.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591748288.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.214 kcal (2) G-P(sol) polarization free energy of solvation -29.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds