Wall clock time and date at job start Sun Mar 29 2020 21:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47315 * 2 1 4 4 H 1.08997 * 109.47310 * 56.71050 * 3 2 1 5 5 N 1.46899 * 109.46602 * 296.71710 * 3 2 1 6 6 C 1.46906 * 111.00147 * 303.48212 * 5 3 2 7 7 C 1.50700 * 109.47210 * 184.85573 * 6 5 3 8 8 H 1.07998 * 120.00164 * 359.97438 * 7 6 5 9 9 C 1.37882 * 119.99917 * 179.97438 * 7 6 5 10 10 N 1.31512 * 119.99484 * 179.97438 * 9 7 6 11 11 Si 1.86800 * 119.99809 * 0.02562 * 9 7 6 12 12 H 1.48502 * 109.47197 * 89.99786 * 11 9 7 13 13 H 1.48506 * 109.46943 * 209.99694 * 11 9 7 14 14 H 1.48497 * 109.47227 * 329.99498 * 11 9 7 15 15 C 1.52998 * 109.47259 * 176.71834 * 3 2 1 16 16 C 1.53180 * 109.54143 * 299.81555 * 15 3 2 17 17 C 1.53104 * 109.15447 * 183.24326 * 16 15 3 18 18 O 1.42901 * 109.48500 * 57.47912 * 17 16 15 19 19 C 1.42907 * 114.09721 * 298.88215 * 18 17 16 20 20 C 1.53092 * 109.41046 * 61.16421 * 19 18 17 21 21 H 1.09001 * 109.47071 * 185.43815 * 1 2 3 22 22 H 1.09001 * 109.47230 * 305.43271 * 1 2 3 23 23 H 1.08997 * 109.47227 * 65.43021 * 1 2 3 24 24 H 1.09002 * 109.47191 * 239.99763 * 2 1 3 25 25 H 1.08999 * 109.47318 * 119.99588 * 2 1 3 26 26 H 1.00904 * 111.00470 * 67.43723 * 5 3 2 27 27 H 1.08992 * 109.47398 * 64.85462 * 6 5 3 28 28 H 1.09003 * 109.46721 * 304.85092 * 6 5 3 29 29 H 0.97006 * 119.99220 * 179.97438 * 10 9 7 30 30 H 1.08996 * 109.54469 * 60.00000 * 15 3 2 31 31 H 1.08993 * 109.52341 * 303.06336 * 16 15 3 32 32 H 1.09003 * 109.51919 * 63.25204 * 16 15 3 33 33 H 1.09002 * 109.40601 * 297.49328 * 17 16 15 34 34 H 1.09001 * 109.48087 * 177.50915 * 17 16 15 35 35 H 1.08992 * 109.48140 * 301.17886 * 19 18 17 36 36 H 1.08997 * 109.47537 * 181.14283 * 19 18 17 37 37 H 1.09004 * 109.51721 * 182.48355 * 20 19 18 38 38 H 1.08996 * 109.57521 * 62.32488 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6294 1.9731 0.8590 5 7 1.6162 2.1117 -1.2372 6 6 2.0829 1.3761 -2.4201 7 6 1.7338 2.1518 -3.6640 8 1 1.2166 3.0965 -3.5840 9 6 2.0748 1.6554 -4.9044 10 7 1.7697 2.3322 -5.9899 11 14 2.9687 0.0211 -5.0428 12 1 1.9763 -1.0784 -5.1507 13 1 3.8314 0.0296 -6.2516 14 1 3.8091 -0.1872 -3.8364 15 6 3.5678 1.4433 0.0826 16 6 4.0114 0.7498 1.3744 17 6 5.5363 0.8270 1.4877 18 8 5.9482 2.1950 1.4549 19 6 5.6022 2.8796 0.2492 20 6 4.0799 2.8870 0.0871 21 1 -0.3633 -1.0230 0.0974 22 1 -0.3634 0.5958 0.8373 23 1 -0.3633 0.4273 -0.9346 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 0.6146 2.2322 -1.2583 27 1 1.6009 0.3991 -2.4539 28 1 3.1637 1.2464 -2.3641 29 1 2.0099 1.9831 -6.8626 30 1 3.9796 0.9130 -0.7760 31 1 3.5580 1.2496 2.2303 32 1 3.6987 -0.2941 1.3532 33 1 5.9891 0.2908 0.6537 34 1 5.8544 0.3740 2.4268 35 1 6.0558 2.3704 -0.6010 36 1 5.9677 3.9054 0.2961 37 1 3.8161 3.3700 -0.8538 38 1 3.6271 3.4315 0.9156 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591748288.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:48 Heat of formation + Delta-G solvation = -85.792454 kcal Electronic energy + Delta-G solvation = -16864.411544 eV Core-core repulsion = 14319.122097 eV Total energy + Delta-G solvation = -2545.289447 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.68751 -38.52727 -35.12125 -33.89378 -32.83498 -31.79952 -29.39659 -27.18647 -24.70356 -24.07648 -23.67498 -21.42929 -20.18243 -19.09270 -17.33826 -16.89749 -16.66168 -16.06508 -15.95374 -15.57282 -15.35358 -15.09074 -14.57949 -14.26881 -13.94311 -13.68595 -13.45809 -13.08879 -12.73955 -12.52599 -12.41251 -12.24607 -12.15623 -11.89776 -11.69869 -11.55717 -11.30496 -11.23058 -11.07412 -10.78952 -10.36637 -9.00669 -8.30292 -6.32512 1.30299 1.32249 1.42802 2.31543 3.00106 3.04139 3.50106 3.67478 3.97563 4.07274 4.15635 4.22248 4.26494 4.40045 4.40496 4.54570 4.61191 4.76445 4.81206 4.85211 4.86019 4.94497 4.99966 5.04032 5.06611 5.11681 5.23387 5.29578 5.38796 5.44502 5.54902 5.60189 6.00664 6.29140 6.63117 6.71415 6.82321 7.31971 8.86842 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.023487 B = 0.008845 C = 0.007636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.848739 B = 3164.919186 C = 3665.781880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.160 4.160 3 C 0.094 3.906 4 H 0.086 0.914 5 N -0.679 5.679 6 C 0.180 3.820 7 C -0.521 4.521 8 H 0.035 0.965 9 C 0.008 3.992 10 N -0.949 5.949 11 Si 0.944 3.056 12 H -0.267 1.267 13 H -0.282 1.282 14 H -0.251 1.251 15 C -0.082 4.082 16 C -0.142 4.142 17 C 0.056 3.944 18 O -0.399 6.399 19 C 0.061 3.939 20 C -0.134 4.134 21 H 0.063 0.937 22 H 0.068 0.932 23 H 0.035 0.965 24 H 0.044 0.956 25 H 0.087 0.913 26 H 0.335 0.665 27 H -0.015 1.015 28 H 0.024 0.976 29 H 0.266 0.734 30 H 0.048 0.952 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.045 0.955 34 H 0.114 0.886 35 H 0.041 0.959 36 H 0.103 0.897 37 H 0.062 0.938 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.736 -6.355 16.559 18.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.199 4.199 3 C -0.017 4.017 4 H 0.105 0.895 5 N -0.309 5.309 6 C 0.052 3.948 7 C -0.560 4.560 8 H 0.054 0.946 9 C -0.189 4.189 10 N -0.590 5.590 11 Si 0.768 3.232 12 H -0.192 1.192 13 H -0.207 1.207 14 H -0.175 1.175 15 C -0.101 4.101 16 C -0.180 4.180 17 C -0.020 4.020 18 O -0.318 6.318 19 C -0.016 4.016 20 C -0.172 4.172 21 H 0.082 0.918 22 H 0.087 0.913 23 H 0.054 0.946 24 H 0.062 0.938 25 H 0.105 0.895 26 H 0.153 0.847 27 H 0.003 0.997 28 H 0.042 0.958 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.097 0.903 32 H 0.105 0.895 33 H 0.063 0.937 34 H 0.132 0.868 35 H 0.060 0.940 36 H 0.121 0.879 37 H 0.081 0.919 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.373 -5.815 16.518 18.318 hybrid contribution -0.647 -1.193 -1.211 1.819 sum 4.726 -7.008 15.307 17.486 Atomic orbital electron populations 1.21735 0.95376 1.02199 1.01387 1.22293 0.96795 0.98555 1.02215 1.21697 0.94572 0.92603 0.92782 0.89548 1.60489 1.17976 1.51091 1.01341 1.19687 0.95220 0.91589 0.88317 1.21415 1.37025 1.06577 0.90967 0.94633 1.25830 0.96595 1.01223 0.95280 1.70060 1.49361 1.40978 0.98580 0.85755 0.79322 0.79717 0.78397 1.19246 1.20745 1.17502 1.21203 0.95004 0.96254 0.97674 1.22245 0.96674 1.01869 0.97240 1.22739 0.93937 0.82461 1.02900 1.87859 1.79925 1.24802 1.39252 1.22636 0.94597 0.97800 0.86561 1.21980 0.95662 0.97008 1.02524 0.91815 0.91334 0.94623 0.93761 0.89467 0.84711 0.99710 0.95846 0.92515 0.93379 0.90323 0.89460 0.93674 0.86761 0.94035 0.87936 0.91941 0.91228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.83 9.52 71.98 0.68 -3.14 16 2 C -0.16 -4.35 4.80 30.59 0.15 -4.20 16 3 C 0.09 2.82 2.14 44.92 0.10 2.91 16 4 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 5 N -0.68 -26.70 5.60 -495.57 -2.78 -29.47 16 6 C 0.18 8.44 3.65 85.56 0.31 8.76 16 7 C -0.52 -30.28 9.91 25.60 0.25 -30.03 16 8 H 0.04 2.30 8.06 -2.91 -0.02 2.28 16 9 C 0.01 0.46 5.47 84.66 0.46 0.92 16 10 N -0.95 -59.86 13.96 21.45 0.30 -59.56 16 11 Si 0.94 44.47 27.47 68.60 1.88 46.35 16 12 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 13 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 14 H -0.25 -11.05 6.54 99.48 0.65 -10.40 16 15 C -0.08 -2.42 1.59 -10.67 -0.02 -2.43 16 16 C -0.14 -3.14 4.98 30.69 0.15 -2.98 16 17 C 0.06 1.22 6.84 72.02 0.49 1.72 16 18 O -0.40 -10.71 10.77 -148.98 -1.60 -12.31 16 19 C 0.06 1.66 6.84 72.01 0.49 2.15 16 20 C -0.13 -4.06 5.22 30.69 0.16 -3.90 16 21 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 22 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 23 H 0.03 1.07 7.19 -2.39 -0.02 1.05 16 24 H 0.04 1.42 6.27 -2.39 -0.01 1.40 16 25 H 0.09 1.89 6.34 -2.39 -0.02 1.88 16 26 H 0.33 13.05 7.57 -89.69 -0.68 12.37 16 27 H -0.01 -0.68 5.89 -2.39 -0.01 -0.69 16 28 H 0.02 1.13 5.22 -2.39 -0.01 1.12 16 29 H 0.27 15.64 8.31 -92.70 -0.77 14.87 16 30 H 0.05 1.65 6.39 -2.39 -0.02 1.64 16 31 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.09 1.66 6.55 -2.39 -0.02 1.64 16 33 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.11 1.89 8.14 -2.39 -0.02 1.88 16 35 H 0.04 1.17 8.14 -2.39 -0.02 1.16 16 36 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 37 H 0.06 2.29 7.72 -2.39 -0.02 2.27 16 38 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -65.52 288.31 1.34 -64.18 By element: Atomic # 1 Polarization: 20.74 SS G_CDS: 0.29 Total: 21.03 kcal Atomic # 6 Polarization: -33.46 SS G_CDS: 3.24 Total: -30.22 kcal Atomic # 7 Polarization: -86.56 SS G_CDS: -2.48 Total: -89.04 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: -1.60 Total: -12.31 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 1.88 Total: 46.35 kcal Total: -65.52 1.34 -64.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591748288.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.608 kcal (2) G-P(sol) polarization free energy of solvation -65.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds