Wall clock time and date at job start Sun Mar 29 2020 22:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.48505 * 2 1 4 4 C 1.53091 * 109.48010 * 239.96482 * 2 1 3 5 5 C 1.53181 * 109.16574 * 182.40588 * 4 2 1 6 6 H 1.08995 * 109.61626 * 297.07496 * 5 4 2 7 7 C 1.52997 * 109.54358 * 176.84703 * 5 4 2 8 8 C 1.53007 * 109.46883 * 175.44430 * 7 5 4 9 9 N 1.46902 * 109.46771 * 179.97438 * 8 7 5 10 10 C 1.46904 * 110.99709 * 180.02562 * 9 8 7 11 11 C 1.50695 * 109.46798 * 180.02562 * 10 9 8 12 12 H 1.08004 * 120.00546 * 0.27742 * 11 10 9 13 13 C 1.37885 * 119.99721 * 179.97438 * 11 10 9 14 14 N 1.31514 * 120.00035 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99853 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46986 * 90.00256 * 15 13 11 17 17 H 1.48496 * 109.47029 * 210.00273 * 15 13 11 18 18 H 1.48499 * 109.47352 * 330.00102 * 15 13 11 19 19 C 1.53181 * 109.03172 * 56.98272 * 5 4 2 20 20 C 1.53088 * 109.16369 * 303.01626 * 19 5 4 21 21 O 1.42906 * 109.48250 * 120.02304 * 2 1 3 22 22 H 1.09008 * 109.46792 * 299.97251 * 1 2 3 23 23 H 1.08994 * 109.47334 * 59.97258 * 1 2 3 24 24 H 1.09000 * 109.47201 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.52235 * 62.50643 * 4 2 1 26 26 H 1.09004 * 109.52494 * 302.31372 * 4 2 1 27 27 H 1.09001 * 109.47320 * 55.44951 * 7 5 4 28 28 H 1.09003 * 109.47371 * 295.44618 * 7 5 4 29 29 H 1.08996 * 109.46694 * 60.00619 * 8 7 5 30 30 H 1.08990 * 109.47393 * 300.00051 * 8 7 5 31 31 H 1.00901 * 110.99720 * 56.05189 * 9 8 7 32 32 H 1.08992 * 109.47223 * 60.00411 * 10 9 8 33 33 H 1.08997 * 109.46992 * 299.99963 * 10 9 8 34 34 H 0.97000 * 119.99706 * 179.97438 * 14 13 11 35 35 H 1.08999 * 109.52286 * 62.93130 * 19 5 4 36 36 H 1.08999 * 109.51888 * 183.11173 * 19 5 4 37 37 H 1.08999 * 109.48113 * 177.59459 * 20 19 5 38 38 H 1.09001 * 109.48378 * 297.62835 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0275 0.0000 4 6 2.0405 -0.7224 -1.2495 5 6 3.5711 -0.7710 -1.2122 6 1 3.9702 0.2428 -1.2416 7 6 4.0876 -1.5597 -2.4171 8 6 5.6168 -1.5112 -2.4409 9 7 6.1127 -2.2690 -3.5975 10 6 7.5806 -2.2448 -3.6525 11 6 8.0513 -3.0300 -4.8494 12 1 7.3320 -3.4963 -5.5064 13 6 9.4003 -3.1480 -5.1094 14 7 10.2760 -2.5757 -4.3125 15 14 9.9839 -4.1220 -6.5927 16 1 10.0895 -3.2194 -7.7672 17 1 11.3140 -4.7153 -6.3032 18 1 9.0121 -5.2056 -6.8870 19 6 4.0176 -1.4601 0.0810 20 6 3.4308 -0.7092 1.2790 21 8 2.0066 -0.6741 1.1665 22 1 -0.3633 0.5135 0.8903 23 1 -0.3634 0.5142 -0.8897 24 1 -0.3633 -1.0277 -0.0005 25 1 1.7148 -0.1845 -2.1398 26 1 1.6443 -1.7376 -1.2708 27 1 3.6959 -1.1199 -3.3343 28 1 3.7581 -2.5960 -2.3415 29 1 6.0085 -1.9510 -1.5238 30 1 5.9463 -0.4750 -2.5165 31 1 5.7126 -1.9213 -4.4561 32 1 7.9856 -2.6896 -2.7436 33 1 7.9240 -1.2138 -3.7368 34 1 11.2250 -2.6590 -4.4953 35 1 3.6614 -2.4902 0.0865 36 1 5.1058 -1.4498 0.1421 37 1 3.7101 -1.2201 2.2005 38 1 3.8193 0.3091 1.2957 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591759432.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:44 Heat of formation + Delta-G solvation = -77.981668 kcal Electronic energy + Delta-G solvation = -15737.349745 eV Core-core repulsion = 13192.399000 eV Total energy + Delta-G solvation = -2544.950746 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.67750 -36.27659 -34.22191 -32.90738 -32.29506 -29.37602 -27.77929 -25.93045 -23.51568 -22.78173 -21.33184 -20.75181 -19.96673 -16.44115 -16.37202 -15.92985 -15.37753 -14.76565 -14.49988 -14.36028 -14.21249 -13.31961 -13.01903 -12.65623 -12.54784 -12.23414 -11.96376 -11.92549 -11.69629 -11.23529 -11.17336 -11.05031 -10.81546 -10.65741 -10.52066 -10.26533 -10.16746 -9.88016 -9.43650 -9.13987 -8.47909 -7.27506 -6.02870 -4.04844 3.31978 3.37869 3.42848 3.67233 4.42225 4.53825 4.69905 4.82438 4.89602 5.04641 5.17819 5.28620 5.32883 5.36048 5.43880 5.49740 5.55642 5.61449 5.75583 5.78889 5.86617 5.93540 6.03313 6.06282 6.12279 6.19203 6.29718 6.55460 6.61081 7.15850 7.26729 7.43123 7.79375 8.13837 8.41279 8.63349 9.04625 9.60069 11.08326 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.068374 B = 0.003979 C = 0.003834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 409.411299 B = 7035.925584 C = 7301.967498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.085 3.915 3 H 0.055 0.945 4 C -0.144 4.144 5 C -0.088 4.088 6 H 0.068 0.932 7 C -0.109 4.109 8 C 0.058 3.942 9 N -0.692 5.692 10 C 0.193 3.807 11 C -0.514 4.514 12 H 0.062 0.938 13 C 0.055 3.945 14 N -0.899 5.899 15 Si 0.900 3.100 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.273 1.273 19 C -0.152 4.152 20 C 0.062 3.938 21 O -0.384 6.384 22 H 0.060 0.940 23 H 0.069 0.931 24 H 0.063 0.937 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.057 0.943 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.014 0.986 31 H 0.327 0.673 32 H 0.027 0.973 33 H -0.015 1.015 34 H 0.261 0.739 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.092 0.908 38 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.459 6.018 8.732 19.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.027 3.973 3 H 0.073 0.927 4 C -0.181 4.181 5 C -0.107 4.107 6 H 0.086 0.914 7 C -0.147 4.147 8 C -0.072 4.072 9 N -0.322 5.322 10 C 0.067 3.933 11 C -0.553 4.553 12 H 0.080 0.920 13 C -0.147 4.147 14 N -0.538 5.538 15 Si 0.727 3.273 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.197 1.197 19 C -0.190 4.190 20 C -0.015 4.015 21 O -0.303 6.303 22 H 0.079 0.921 23 H 0.088 0.912 24 H 0.082 0.918 25 H 0.089 0.911 26 H 0.091 0.909 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.033 0.967 31 H 0.143 0.857 32 H 0.045 0.955 33 H 0.003 0.997 34 H 0.071 0.929 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.110 0.890 38 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -16.399 5.342 9.223 19.558 hybrid contribution 0.949 0.559 -1.268 1.680 sum -15.449 5.901 7.955 18.352 Atomic orbital electron populations 1.21765 0.93361 1.02875 1.02174 1.22088 0.94780 0.94941 0.85449 0.92733 1.22281 0.96000 1.01907 0.97939 1.21192 0.94585 0.99669 0.95256 0.91391 1.21600 0.96078 1.00468 0.96520 1.21926 0.93552 0.95363 0.96314 1.60667 1.11152 1.56322 1.04067 1.19548 0.80990 0.95086 0.97720 1.21206 0.91686 1.32445 1.09957 0.91965 1.25007 0.96753 0.95942 0.96960 1.69966 1.01636 1.44460 1.37756 0.86472 0.78032 0.80200 0.82557 1.20727 1.21219 1.19736 1.22299 1.01676 1.00524 0.94509 1.22584 0.80737 0.99523 0.98636 1.87898 1.21315 1.78093 1.43036 0.92082 0.91186 0.91826 0.91059 0.90942 0.92394 0.91258 0.91773 0.96737 0.85701 0.95479 0.99727 0.92918 0.90878 0.90322 0.89007 0.93439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 9.56 37.16 0.36 -0.86 16 2 C 0.09 0.87 3.26 -26.69 -0.09 0.79 16 3 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 4 C -0.14 -1.52 4.70 -26.59 -0.13 -1.64 16 5 C -0.09 -1.05 2.28 -90.43 -0.21 -1.26 16 6 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 7 C -0.11 -1.55 4.95 -26.73 -0.13 -1.68 16 8 C 0.06 1.05 5.44 -3.82 -0.02 1.03 16 9 N -0.69 -15.27 6.49 -115.06 -0.75 -16.02 16 10 C 0.19 5.21 5.44 -4.98 -0.03 5.18 16 11 C -0.51 -14.89 9.32 -34.44 -0.32 -15.21 16 12 H 0.06 1.77 7.81 -52.48 -0.41 1.36 16 13 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 14 N -0.90 -27.23 13.29 55.43 0.74 -26.49 16 15 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 16 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 17 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 19 C -0.15 -1.80 5.09 -26.59 -0.14 -1.94 16 20 C 0.06 0.67 6.84 37.20 0.25 0.92 16 21 O -0.38 -4.65 10.41 -35.23 -0.37 -5.01 16 22 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 23 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.06 1.17 6.64 -51.93 -0.35 0.83 16 30 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.33 6.86 8.72 -39.29 -0.34 6.52 16 32 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 33 H -0.02 -0.43 8.14 -51.93 -0.42 -0.85 16 34 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.08 0.96 6.74 -51.93 -0.35 0.61 16 37 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 LS Contribution 303.76 15.07 4.58 4.58 Total: -1.00 -30.76 303.76 -8.29 -39.05 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -6.92 Total: 0.19 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: -0.54 Total: -13.18 kcal Atomic # 7 Polarization: -42.50 SS G_CDS: -0.01 Total: -42.51 kcal Atomic # 8 Polarization: -4.65 SS G_CDS: -0.37 Total: -5.01 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.76 -8.29 -39.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591759432.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.931 kcal (2) G-P(sol) polarization free energy of solvation -30.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds